Obru001175.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- -
- Assembly
- GCA_010583005.1
- Location
- NW:477426-482862[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.33 21 5.2 0.2 2 22 118 137 117 137 0.90 2 14 0.0011 0.071 13.0 0.9 3 20 145 162 143 165 0.94 3 14 0.0023 0.14 12.0 1.7 1 23 171 194 171 194 0.93 4 14 2e-06 0.00013 21.6 1.3 1 23 200 222 200 222 0.98 5 14 5.2e-06 0.00033 20.3 1.4 1 23 390 412 390 413 0.96 6 14 0.0015 0.093 12.6 0.2 2 21 423 442 422 443 0.93 7 14 0.00026 0.016 15.0 2.6 1 20 465 484 465 487 0.92 8 14 0.00023 0.015 15.1 0.5 1 23 492 515 492 515 0.95 9 14 7.3e-06 0.00046 19.9 0.5 1 23 521 543 521 543 0.98 10 14 8.2e-05 0.0052 16.5 2.5 1 23 550 572 550 572 0.99 11 14 0.00015 0.0095 15.7 0.7 3 23 580 600 578 600 0.97 12 14 0.00033 0.021 14.6 0.3 1 23 606 629 606 629 0.96 13 14 0.6 38 4.4 0.4 1 23 643 665 643 665 0.93 14 14 0.0017 0.11 12.4 0.4 2 23 941 962 940 962 0.97
Sequence Information
- Coding Sequence
- ATGGAGAACCACGAAAGCGAGCAGTTCGTGACGTTCCCGCTCGGCGACGTGCACGATGCCATACAGGAGAATATGATCTCCCATGAGGAGATCTGCGAGCCCGGCGTCGAGGAGTGCGTGCTGCAGGAGGAGCTCGCGGAAGTCCCCGTCAGCAATGCCGAGATCACGGAGTCGCAGGGTGAAATGCTCGCAGAGCAGTCGGACGAAGAGGACGATAATCACGTGGTGTACCCGATGTACATCAAACAGGAGGAGCAGCAGCAGTACACGTCGGGTGATGACGAGTCCATGGCAGTGGAGGCGTTGCGCCAATTGGGTGGTATGTACCCCTGCTTCGAGGACAAGAAGGTCAGTTGTCCCAGCTGCAAGAATTCCTTCAGTAGGGACGAGATGGCCAAGCATCAGTCCACCTGCGGCGCATCCAAGCTGGCCTGCACCACCTGTGGTGAGAGATTTGAGAGGAAGATTGACTTGAGCAATCATATGGTGTGCCATCAGGTAGACCGTCCTCATGCATGCAGAACGTGTGGTAATCTCTTCCGTTCCAAGAGCAGTCTACAGTCGCACGTGCAGCAGGTGCACCAGGTGGAACGGCCGCACAAGTGCACTATCTGCGGTTCTGTTTTCCAGAGGCCCTCCAGCTTGTCTAATCATATGAAAATACATACCTATATCGCCGGCCGCGCAATCATGCAGTCCCAGGGTAGCGGTGGCGCGTCTCACTCAGCTCAGGAGACCTTCAGGAAATGGCCCGAGGACGCGGCCGACTCGTCCAACACCTCGCAGGTTTCATCGGTACATCACTCGATGCAGAGCTACGACGTATGCCAGGTGCAGTGGCCCGTGTCGTCGTACAACTTCCAGGGCGAGCAGTCGACGGTGGCGACGATGTCGAGTCAGCCAGAGAAGATGGACACGCTGCAGGAGTTTACGGTTATGTCCAATGGCGAGGTGGCGCAGTTCGAGTACGCCGAGCAGAACAATATAGGCAATCCGGCCGGCGGTCAGCAATTCAATCTGTCGTTGAACTCGTTCGAGGCTCACGACGGAGTGGTGAAGGTCGAGGCACTTTCCTACAACAACGAGAACAGGAAGGGCTACGTGCAGATCGAACAGGCGAACGGTGCCAAGCAACCACAACAGGAGCAAtcgcaacagcagcagcattaTACCTGCAAGCACTGTGGGATCGCATTCTCACGCGCAACCGCCTTGGCGTCCCACGAAAAAATTCACCACGTCGCAAAGAACTGGAACATGCCGATCGAATGTGAGTACTGCGACAAGCAGTTCCAGGACGGCGACCACTTGGTCACCCACCAGACCACCTGTGCAAAGAAAATTATGCGAAACAATATTGAACAAGGCGTGAGCAATAACAAATGGGGCAAGCACGCGTGCTCTGAGTGCGGCAAAAAGTTCACGACAAAACAGAAGATGTTCCGCCACCAGTGGATCCACAGGAAGAAAACACACTCGTGCGAGGTGTGTGGCGCGCAGTTCGAGAGGCAGTCGCAACTGGACGAGCACCGACTGTCGGACCATCCCGGCGACTCGCCGCACACTTGCGCCGAGTGTGGCAAGAGCTTCGTGTCGCGCCAAGGTCTCTGGGAGCACGGCAGGACGCATGTGGGTAGTCCGGCGCACTTCCAATGCGACAAGTGCTCTAAAACCTTCTCGTCGCGTCAGGGCTATCTGATCCACAACCGTACGCACACGGGAGAGCGACCGTACGGCTGCAAGTTCTGCTGGAAATCCTTCCGAGATGGTGGCACTCTGAGGAAGCACGAGAGGATCCACACCGGCGAGAGGCCGCATGTGTGTCCGTTGTGCACGCGGGCGTTCAACCAGAAAGTAGTGTTGCGCGAACACGTACGTTGGGTGCACGCTGCGGGTAAAAACGAAACTGAGGGTAGCGATCCGCCCTATCGTTGCTCGCTCTGCGGCGCTCTAAACCAGGATCGCGACGAGCTCTGCGCGCATATTGTCAAGCATTCCGACCAGATGATAGCCGAGGCCAAAGCGAAGAGCAACGACGGCTACCCCAAGTCCAAGTTGGCCAAAAAGAAGGCCAAGCCCAAGTCGTCGTCTTCATCTTCGTCGACATCGTCGTGCGGCGTTAACGCGTCCGCAAACAAGCAGAATATGATGGATCACTTCATCTCGAAAACGGAACAGAACGAGGCCCTGCTGTCGATCACGGACAACGTCGAAAAACCAAACGACCTGCACGTCATCAATGACAAATCAGCCAACGCCTACGTCGTCGTAACCACGGAGAAGCGTGGCGACGGCTTCATCGCGATatccgagttcaagcacagcAATATACGCTTCATAGTCGAGGGCAAGGAGGACGAGAACATCCATGTACTCCAGGTGGAGCAGAATCACCAGGACTCCCTCGATGTAATCGCTGCATCGGAGGAGTGCAACGACACACAGTCGGCCACGACAGAGTCCACGGGTGGCGCACTCGACGGCACGATCAGACGCGGTGACATGACGACGATGCATCTGATCCAAACCTCATCCGCCAAACAGAACACTCTCAACATCATATCCAAGCAGAACGAGTCGTTGCCGGTCTTGGCGATACCGAATCCGCAGAGTCACCATGACTACTCCAGCCAAATCGTACAGGTCAGCGAGGTGGACATAGGGTCGATGGTGACTCATCAGGCACAGCTGAAAAGTGAGAAGAGTCGCGTCGTCAGTCAGGAGAACAGAGATCCCTTGATGCAGGACGACGCGCCTCAGACGGCGGTCATCCAGGTGGTGCAGTACCAACAGCACGAGAGCGACGAGAGCGAGGACCTCACCTGCGGAATCTGCGCGGAGGAATTCGACGACAAGCATAGGCTTAAGGAGCACatcaaaattcatatataa
- Protein Sequence
- MENHESEQFVTFPLGDVHDAIQENMISHEEICEPGVEECVLQEELAEVPVSNAEITESQGEMLAEQSDEEDDNHVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCPSCKNSFSRDEMAKHQSTCGASKLACTTCGERFERKIDLSNHMVCHQVDRPHACRTCGNLFRSKSSLQSHVQQVHQVERPHKCTICGSVFQRPSSLSNHMKIHTYIAGRAIMQSQGSGGASHSAQETFRKWPEDAADSSNTSQVSSVHHSMQSYDVCQVQWPVSSYNFQGEQSTVATMSSQPEKMDTLQEFTVMSNGEVAQFEYAEQNNIGNPAGGQQFNLSLNSFEAHDGVVKVEALSYNNENRKGYVQIEQANGAKQPQQEQSQQQQHYTCKHCGIAFSRATALASHEKIHHVAKNWNMPIECEYCDKQFQDGDHLVTHQTTCAKKIMRNNIEQGVSNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGAQFERQSQLDEHRLSDHPGDSPHTCAECGKSFVSRQGLWEHGRTHVGSPAHFQCDKCSKTFSSRQGYLIHNRTHTGERPYGCKFCWKSFRDGGTLRKHERIHTGERPHVCPLCTRAFNQKVVLREHVRWVHAAGKNETEGSDPPYRCSLCGALNQDRDELCAHIVKHSDQMIAEAKAKSNDGYPKSKLAKKKAKPKSSSSSSSTSSCGVNASANKQNMMDHFISKTEQNEALLSITDNVEKPNDLHVINDKSANAYVVVTTEKRGDGFIAISEFKHSNIRFIVEGKEDENIHVLQVEQNHQDSLDVIAASEECNDTQSATTESTGGALDGTIRRGDMTTMHLIQTSSAKQNTLNIISKQNESLPVLAIPNPQSHHDYSSQIVQVSEVDIGSMVTHQAQLKSEKSRVVSQENRDPLMQDDAPQTAVIQVVQYQQHESDESEDLTCGICAEEFDDKHRLKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00452722;
- 90% Identity
- -
- 80% Identity
- -