Dqua000548.1
Basic Information
- Insect
- Dinoponera quadriceps
- Gene Symbol
- -
- Assembly
- GCA_001313825.1
- Location
- NW:1099438-1104605[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.17 10 6.0 0.2 2 22 120 139 119 139 0.92 2 14 0.00037 0.022 14.5 1.4 2 20 146 164 145 167 0.94 3 14 0.00038 0.022 14.4 2.1 1 23 173 196 173 196 0.94 4 14 1.8e-05 0.0011 18.6 1.4 1 23 202 224 202 224 0.98 5 14 5.9e-06 0.00035 20.1 0.4 1 23 381 403 381 403 0.98 6 14 0.0027 0.16 11.7 0.3 2 21 413 432 412 433 0.93 7 14 0.00025 0.015 15.0 2.6 1 20 455 474 455 477 0.92 8 14 0.0046 0.27 11.0 0.2 1 23 482 505 482 505 0.95 9 14 2.9e-06 0.00017 21.1 0.8 1 23 511 533 511 533 0.98 10 14 0.00035 0.02 14.5 2.2 1 23 540 562 540 562 0.99 11 14 2.9e-05 0.0017 17.9 0.6 3 23 570 590 568 590 0.97 12 14 0.00033 0.02 14.6 0.2 1 23 596 619 596 619 0.96 13 14 0.41 24 4.9 0.3 1 23 633 655 633 655 0.94 14 14 5.3e-06 0.00031 20.3 0.1 1 23 925 947 925 947 0.98
Sequence Information
- Coding Sequence
- ATGGAGACCCACGAGGGTGAACAGTTCGTGACGTTTCCCCTTGCTGATGTGCACGATGCCATACAGGAGAACATGATATCCCACGAGGAGATATGCGAGCCTAGCGTCGACGAATGCGTCCTTCAGGAAGATCTCACGGATGTGCCGGTGAACGATGTCAACGCCGAGATCGCGGAACCGCAGAATGAGATACTTGCGGAACAGTCCGACGAAGAGGATGACAATCAAGTGGTGTATCCGATGTACATCAAGCAAGAAGAACAGCAGCAGTACACATCGGGCGATGACGAGTCGATGGCGGTGGAGGCCCTGCGGCAGTTGGGTGGCATGTATCCTTGCTTTGAGGACAAGAAGGTCAGCTGTCCCACCTGCAAAAATCTCTTCAACCAGGACGAGTTGGCCAAGCACCAGTCTACGTGCACTGTATCCAAGTTATCTTGTACAACCTGCGGTGAGAGATTCGAGAGGAAGATAGACCTCAATAACCACATGGTTTGCCACCAGGTGGACCGTCCTCACGCATGCAGGACATGCGGCAACTTGTTCCGTTCTAAGAGCAGCTTGCAGTCGCACATGCAGCAGGTGCACCAGGTCGAACGGCCGCACAAGTGCACGGTCTGCGGCTCAGACTTCCAGAGGCCCTCCAGCTTGTCCAATCACATGAAAATACACACGTACATCGCGGGACGCGCCATCCAGCAAAGCGGCAATTTACCGGTTCAAGAGACGTTCAGGAAGTGGCCGGAGGACGCGTCGGATTCGCAGAATACCTCCCAGGTGTCGTCGGTGCATTCCATACAGAATTATGACGTGTGTCAGGTACAATGGCCGGTGTCGTCGTACAATTTCCAGGGCGAGCAGTCGACGGTCACGACGATGTCGAATCAGCAGGAGAAGATGGACGCGCTGCAGGAGTTCACGGTGATGTCCAACGGCGAGGTGACGCAGTTCGAGTACACGGAGCAGAACAGCATCGGCAATGCGGTCGGTGGTCAGCAGTACAACCTGTCATTGAACTCGTTTGATGGCCAGGACGGGGTGGTGAAGGTTGAGGCGCTCTCGTACAACAACGAGAACCGGAGGAACTTCGTGGAGATCGAGGAGAACGGCGGCaagcagcaacaacaacagccGCAGCATTACACGTGCAAGCACTGCGGGGTCGCGTTCTCACGAGCGACCGCGTTAGCCTCCCACGAGAAGATCCACACCGCCAAGAACTGGAACATGCCGATCGAGTGCGAATATTGCGACAAGCAGTTCCAAGACGGCAATCACCTGGCGACCCACCAGACCACTTGCGCCAAGAAGATCATGCGGAACAACATGGAGCAGGGCGTGAGCAACAACAAGTGGAGCAAGCACGCGTGCTCCGAGTGCGGGAAGAAATTCACGACGAAACAGAAGATGTTTCGCCACCAGTGGATCCACAGGAAGAAGACGCACTCGTGCGAGGTGTGCGGCGTGCTGTTCGAGAAGCAGTCCGAATTGGACGAACATCGGCTGTCGGCTCATCTCCGCGACGCGCCGCACACTTGCTCGGAGTGCGGCAAGAGCTTCGTGTCGCGTCAGGGTCTCTGGGAGCATGGCAGGACTCACGTCGGCAGCCCGGCGCACTTCCAATGCGACAAGTGCTTGAAAACCTTTTCTTCCCGTCAGGGATACCTGATTCACAACCGCACGCACACGGGCGAGCGTCCGTACGGCTGCAAGTACTGCTGGAAGTCTTTCCGGGATGGCGGCACTCTGAGGAAACACGAGCGCATCCACACCGGCGAGAGGCCGCACGTGTGCCCGTTGTGCTCGCGGGCGTTCAACCAGAAGGTGGTATTGCGCGAGCACGTGCGCTGGGTGCACGCCGCGGGCAAGAACGAGACCGAGGCGAGCGATCCGCCGTATCAGTGTTCCCTGTGCGGCGCCTTGAACCAAGACCGCGACGAGCTCTGCGCGCACATCGTCAAGCATTCCGATCAGTTGATAGCCGAGGCTAAAGCGAAGAACAACGACGGCTACCCGAAGTCGAAGTCGTTGGCCAAGAAGAAGGCGAAGTCCaagtcctcctcctcgtcctcgtcgaccTCCTCGTGCGGCATCAACGCCCCCAGCGGTAAGCACGATGCGCTCGAGCACTTCATCTCGAAGACTGAACAGAACGAGGCGCTGCTGTCGATCACGGAGAACGTGGACAAGCCGGACGATCTGCACGTGATCAATGACAAGCCGAACAACGCCTTCGTCGTGGTGACCGCGGAGAAACGTACCGACGGCTTCATCGCGATATCCGAGTTCAAGCACAGCAACATACGCTTCATCGTGGACGGCAAGGAGGACGAGAATATCCACGTGCTGCACGTCGATCAGAATCACCGGGACCCCCTCGACGTGATCGCCGCGTCGGAGGAGTGCAGCGACGCGACGCAGTCGGTCGTGGCCGCCGACGAGACGATCAGGCGCGGCGAGATGACGACGATGCATCTGATCCAGGCTTCTCCCGGCAAGCAAAACACCCTCAACATAATATCGAAGCAAAACGAGTCGCTGCCGGTGCTGGCGATACCGAACCCGCAGAGCCACACCGATTACTCCAGTCAAATCGTACAGGTGAGCGACGCCGATCTAACAATGGTGGGCCACCAGACGCAGCATCTCAAGGACGGGAAGAGCCGCGTCGATCAGGACGAGCAGGATCGCTTGATGCAGGAGGAAGCGTCTCAGACGGCGGTTATTCAGGTCGTGCAGTACCAGCAGCAGGAGAGTGACGAGGATGAGGAGTTCACCTGCGGAATCTGCGGGGAGGAATTCGACGAGAAGAGCGCGTTGAAAGAACACATTAAGATTCATATATAA
- Protein Sequence
- METHEGEQFVTFPLADVHDAIQENMISHEEICEPSVDECVLQEDLTDVPVNDVNAEIAEPQNEILAEQSDEEDDNQVVYPMYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCPTCKNLFNQDELAKHQSTCTVSKLSCTTCGERFERKIDLNNHMVCHQVDRPHACRTCGNLFRSKSSLQSHMQQVHQVERPHKCTVCGSDFQRPSSLSNHMKIHTYIAGRAIQQSGNLPVQETFRKWPEDASDSQNTSQVSSVHSIQNYDVCQVQWPVSSYNFQGEQSTVTTMSNQQEKMDALQEFTVMSNGEVTQFEYTEQNSIGNAVGGQQYNLSLNSFDGQDGVVKVEALSYNNENRRNFVEIEENGGKQQQQQPQHYTCKHCGVAFSRATALASHEKIHTAKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKIMRNNMEQGVSNNKWSKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGVLFEKQSELDEHRLSAHLRDAPHTCSECGKSFVSRQGLWEHGRTHVGSPAHFQCDKCLKTFSSRQGYLIHNRTHTGERPYGCKYCWKSFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEASDPPYQCSLCGALNQDRDELCAHIVKHSDQLIAEAKAKNNDGYPKSKSLAKKKAKSKSSSSSSSTSSCGINAPSGKHDALEHFISKTEQNEALLSITENVDKPDDLHVINDKPNNAFVVVTAEKRTDGFIAISEFKHSNIRFIVDGKEDENIHVLHVDQNHRDPLDVIAASEECSDATQSVVAADETIRRGEMTTMHLIQASPGKQNTLNIISKQNESLPVLAIPNPQSHTDYSSQIVQVSDADLTMVGHQTQHLKDGKSRVDQDEQDRLMQEEASQTAVIQVVQYQQQESDEDEEFTCGICGEEFDEKSALKEHIKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01087383;
- 90% Identity
- -
- 80% Identity
- -