Obru000369.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontomachus brunneus
Gene Symbol
pita
Assembly
GCA_010583005.1
Location
NW:2607676-2614365[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0011 0.072 13.0 1.0 2 23 317 338 316 338 0.97
2 11 6.3e-06 0.00041 20.0 1.7 1 23 346 369 346 369 0.97
3 11 0.00037 0.024 14.5 2.4 1 23 416 438 416 438 0.98
4 11 4.8e-07 3.1e-05 23.6 1.5 2 23 495 516 494 516 0.97
5 11 5.4e-05 0.0035 17.1 1.2 1 23 521 544 521 544 0.95
6 11 1.1e-05 0.00073 19.2 0.3 1 23 582 604 582 604 0.98
7 11 6.6e-07 4.2e-05 23.1 0.9 1 23 614 636 614 636 0.96
8 11 1.9e-06 0.00012 21.7 1.2 1 23 642 664 642 664 0.99
9 11 9.4e-06 0.0006 19.5 0.2 1 23 670 692 670 692 0.98
10 11 4.9e-06 0.00031 20.4 2.6 1 23 698 720 698 720 0.98
11 11 0.0011 0.069 13.0 0.5 1 21 726 746 726 747 0.94

Sequence Information

Coding Sequence
ATGAGGAACATGGAAGTCGTGAACGATGACGAGATGGTGAATAATTTGTTACACGAGGAGCGACTTGTGGGCAACGAGTGCCGCATCTGTCTGAAATCCTGCACGGAGGCGTGCCAACTCTTCCGGAATAACGCCGGAATACCAGAGAAGTTGATGGCCATCGCTGCTGTACAGGTAGAGGAAGGAGATGGTCTACCAACTACTATTTGTTTATCCTGCAACCGCCTGCTCGACGTGTCCTACGACTTCAAACGCCAAATTCAAGACTCTGATGTGAGACTTCGTCAAATCTTGAAGCCGCAAATTCATTCCGTGCCGCACGACAAACATACAAAGGATGGTGCAACAGTCAAAGATATCATCACTGATATTATATCTGTTACCTCCTGTACAAAAGACGATCACATGGAGCAGGAAATCTACACGACCCACGATATCGTTACGTTCGACAGCACTACCATGCCGCCTGACGTGGGTTTGAACGACGATGAATCTCGCATAAGTCACGAATTCATGCCGAAAACGGACGAGATTGTGGAACAAACTGAGAAAGACACGTCGTATAGCGCGCTcaaagagaatataaatatacataacacTGAAATTATAGAAGCAACCTTCGAAGAGACGCATGTGAAGGAGATGCACACAAATACACTCGCAGATGACACGAGTCACTTAACCGGTCTGTCGACGGACGACAAATGCATGAAGCAGGAGGAAATGATGTTATCCCAGGAGGACGAGACGTCGAAAAATTTGGTGGACGCGAGCAGGGTAGAGAATCTGCTGAAGATAGAAGTCAAGAACGATATATCGTTGGAGGATCTCAATGACCATGATATAAAAGCACACGCGATACTAGGGACGGATAGTCTGGACACGAAGGGCGAGACGAACGGCAGCGACGACGAGGAAAAGCCGCTGATAAACAGGACAGGCAGACAGAGGTGCTTGCATTGCATCAAGTCGTTCGCGACAAAACTGGCGCTGCAGAGACACATAATCGTGCACAAACATAAGACGAAATTGCGTTACGTCTGTCACATATGCGACAAGCAATTCTCCAATATCGCCAAGCTGAAGAGCCACGTGCGTAACAGTCACGAGGCGCACAAGCTGGACATCGAAGTACCGCAAGAGAATAATCAAGATAAGAGGGCCGGCAAGACGTCGATAAAGGTCACCAGGAGCTGCGCCAACCCGGCGATGGACAACgcgagggaggaaaagagaaactTCAAGTTCACGTGCAAGGTTTGCTCAAAGCAATTTATTTATCAGAAGTCCTTCATATCTCACGCCAAGAGTCACCCCGAGTACAGCGAGGAGACGACGTCGGATGACGCGCTCGATCAGCTCGCGAACAAAGTGAACGAACAGCGAGACAAAGCGCCCGCATTCAGGGAAAACGAAtctgaggaggaagaggacgatgatgacgacgacgacaacgacaacgaacTGCCGATCGAAAGTTTGCAATGCACGCAGTGCGGCAAGCTATTCGCCACTAAGAGGAATCTGAAGAGACACATTTCGACGCATAGTGGCTTGAAGTTTAACTGCACGACTTGCGGCAAGGGATTTTCAAGGATTGACAAGCTAAAGGATCATGAACAGTCGAAACACAAGGACGAAATATTCGGCAACACggacgacgaggatgacgacgaAGAGGACAATGAGAATAAAGTGAACGAGAATTCTGAAAGTCGGAAAAAGGACCGACATAATAGACCGCACAAATGTGCTCTCTGCCCGAAGGCGTTCGCGCAGGCTCAATCGTTGGCGAACCACATGGAGAGGCACAAGAGAGTGAAGGACACGCAAAAGCGCTTTCTTTGCGAAGTCTGCAGCAAGTGCTTCGCCCAGAGTGGCTCGTTGGTCGCGCACATGCGCACCCACACCGGCGTCAAGCCATACGTGTGCAACGTGTGCAGTCGTGCTTTCACCAAGAGCACGTATCTGCAGCTACATTTGAGGACCCACAGCGGCGAGAAACCGTACATCTGTCAGTATTGTAGCAGGGCATTCGCCCGGGCCAACACGCTGGCGCGACACATCACCATGCACACTGGTGAAGCCAAGTACCAATGTCAGATCTGCACTAAATCTTTCCGCAGGCTGACCTCACTGAACGAGCACACGTATACGCATACCGGCCAACGGCCGTACGCGTGCAAGCTCTGCACTAAGCGCTACAACAATGCTGGATCATTGTACGCACACACAAAAAAGTGCAAGGCGCAGCAGCTATCCGGGACGACTACCACGTACGCGGTATCCACGGATAACACTCAGCAGCAGAATGATGGCCCGATGTCGCAGCTGCTCATCTATTCGCAGAGAAAGCTCGTGGAGGAAACGACGGTTGGCCAAGTCGTGTCCACGCCACAATATATGGTAGCGAATGTACACAATCAGAAGGGAGTGTCCGCCAATGTGATTCAACCGTTCACCGTAGAAGACCCGAATGTGTACAATACGAAACAGTTCAAGAACCCTTTTTACATTTATCCGAATATGTAA
Protein Sequence
MRNMEVVNDDEMVNNLLHEERLVGNECRICLKSCTEACQLFRNNAGIPEKLMAIAAVQVEEGDGLPTTICLSCNRLLDVSYDFKRQIQDSDVRLRQILKPQIHSVPHDKHTKDGATVKDIITDIISVTSCTKDDHMEQEIYTTHDIVTFDSTTMPPDVGLNDDESRISHEFMPKTDEIVEQTEKDTSYSALKENINIHNTEIIEATFEETHVKEMHTNTLADDTSHLTGLSTDDKCMKQEEMMLSQEDETSKNLVDASRVENLLKIEVKNDISLEDLNDHDIKAHAILGTDSLDTKGETNGSDDEEKPLINRTGRQRCLHCIKSFATKLALQRHIIVHKHKTKLRYVCHICDKQFSNIAKLKSHVRNSHEAHKLDIEVPQENNQDKRAGKTSIKVTRSCANPAMDNAREEKRNFKFTCKVCSKQFIYQKSFISHAKSHPEYSEETTSDDALDQLANKVNEQRDKAPAFRENESEEEEDDDDDDDNDNELPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCTTCGKGFSRIDKLKDHEQSKHKDEIFGNTDDEDDDEEDNENKVNENSESRKKDRHNRPHKCALCPKAFAQAQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYQCQICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKAQQLSGTTTTYAVSTDNTQQQNDGPMSQLLIYSQRKLVEETTVGQVVSTPQYMVANVHNQKGVSANVIQPFTVEDPNVYNTKQFKNPFYIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00452723;
90% Identity
-
80% Identity
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