Dqua009447.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dinoponera quadriceps
Gene Symbol
-
Assembly
GCA_001313825.1
Location
NW:1238788-1246626[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00056 0.033 13.9 1.3 2 23 311 332 310 332 0.97
2 11 3.5e-06 0.00021 20.8 1.6 1 23 340 363 340 363 0.98
3 11 0.00036 0.021 14.5 2.4 1 23 412 434 412 434 0.98
4 11 4.7e-07 2.7e-05 23.6 1.5 2 23 492 513 491 513 0.97
5 11 5.4e-05 0.0032 17.1 1.1 1 23 518 541 518 541 0.95
6 11 5.6e-06 0.00033 20.2 0.4 1 23 579 601 579 601 0.98
7 11 6.5e-07 3.8e-05 23.1 0.9 1 23 611 633 611 633 0.96
8 11 1.8e-06 0.00011 21.7 1.2 1 23 639 661 639 661 0.99
9 11 9.2e-06 0.00054 19.5 0.2 1 23 667 689 667 689 0.98
10 11 7e-05 0.0041 16.7 4.6 1 23 695 717 695 717 0.98
11 11 0.0011 0.062 13.0 0.5 1 21 723 743 723 744 0.94

Sequence Information

Coding Sequence
ATGGAAGTCGTGAACGATGACGAGATGGTGAATAATTTGGCACACGTGGAGCGACTCGCGGGCAATGAGTGTCGCACCTGCCTGCAATCCTGTACAGAAGCGTGCCAGCTCTTCCAGAATAACGACGGAATACCGGAGAAGCTGATGGACATCGCCGCTGTACAGGTTGAGGAAGGAGATGGTCTACCGGCCTGTATTTGTTTATCTTGCTACCGCCTGCTGAACTTGTCCTACAACTTCAAACGCCAAATTCAAGACGCTGACGTGAGATTACGTGGAATCTTGAAGCTGCAAGCTCATCCTGTGCCACACGATAAGCCGCACACGAATGGCGCAACAGTCAAATATATCGTCACCGATATTATATCCAACGTTACCTCTTGTACAAAGGACGATCTGGTAAAGCAGGAAATCTACGTTGCCCACGATATCGTGACGTTCCACGATACCACCGTTCCGTCCAATGCGAGGGTGAACGACGAGGAATCTCGCATTAGTCAGGAATTCCTGCGGAAGACGGACGAGATCGAACTGGAGCAAAATGAGGAAGACTCGCCGTACGACGCGCTCAAAGAAAATGTACGTAACACCGAACTGGAAGTAACTTTCGGACAGACGCACGCGAAGGAGATGCTCGCAGGTGCACTTGACGATCACTCGAGTCACTTGTCCGCTCCGTCGACGAACGATAAATGTGTAAAACAGGAAGACATGATGTTAACCCAAGGGAACGATGCGTCGGGGAATTTGGCGGAAGACAGCAGGATGGAAGATCTGCTGAAGATCGGTGATAAGAGCGACGTGTCTTTGGAGGATCTCACCGACCATGATGTCTCGAAAGCGCTGGGGACGGACGGTCAGGATATAAAAGGTGGGGCAAACtgcagcgacgacgaggagaagcCGCTGATATGCAGGACAGCCAGGCAGAGGTGCTTGCACTGCATCAAGTCGTTCGCGACCAAGCTGGCGTTGCAGAGACACATGATCGTGCACAAGCACAAGACGAAGCTGCGCTACGTCTGTCACATATGCGACAAGCAGTTCTCCAACATCGCCAAACTGAAGAGCCACGTGCGTAGCAGTCACGAGGCGCGCAAGGCGGACGTTGAAGTGCCGCAAGAGAACAACGCTCAGGAGAAGAGGGCTAACAGCAAGACGTCGGTGAAGCTCACTAGGAACTGCAGCAACGCACTGGTGGACAGCAcgagggaggagaagaggaactTCAAGTTCACGTGCAAGGTCTGCTCGAAGCAGTTCATCTATCAGAAGTCCTTCATCTCCCACGCCAAGAGCCATCCCGAGTACAACGaggagacgacgacgtcggacGACGTCCTCGAGCAGTCCGCGAACAAGGCGAACGAACAGCGAGATAAGGCGCCCGTCTTCCGGGAAAACGAatccgaggaggaggaggaagaggacgacgaggacgacaacGACAACGAGCTCCCGATCGAGAGTCTGCAATGCACGCAGTGCGGCAAACTGTTCGCCACCAAGAGGAACCTGAAGAGACACATCTCCACGCACAGCGGTTTGAAGTTCAATTGTTCGACCTGCGGTAAGGGTTTCTCCAGGGTCGATAAGCTCAAGGACCATGAACAGTCGAAGcataaagaagaaatattcggCAACAcggacgacgaggatgacgacgaggaggacaaTGAAAACAAAGTCAACGAGAACTCCGAGAGTCGGAAGAAGGACCGACACAACAGACCGCACACGTGTACGCTCTGCCCGAAGGCGTTCGCGCAGGCTCAATCGCTGGCGAACCACATGGAGAGGCACAAGCGGGTGAAGGACACTCAGAAGCGCTTCCTCTGCGAAGTCTGCAGCAAGTGCTTCGCCCAGAGTGGCTCGTTGGTCGCACACATGCGCACCCACACTGGCGTCAAGCCGTACGTCTGCAACGTGTGCAGCCGCGCCTTCACCAAGAGCACGTACCTGCAGCTGCACCTGAGGACCCACAGCGGTGAGAAACCGTACATCTGTCAGTATTGCAGCAGGGCGTTCGCCCGGGCCAACACCTTAGCGCGACACATCACCATGCACACGGGCGAGGCCAAGTACCACTGCCAGATCTGCACCAAGTCCTTCCGCAGACTGACATCGCTGAACGagcacacgtacacgcacaccGGTCAACGGCCGTACGCGTGCAAGCTCTGCACCAAACGCTACAACAACGCTGGCTCGTTGTACGCGCACACGAAGAAGTGCAAGACGCAGCAGCTGACCGGCACCACCACTACGTACGCGGTCTCCGCGGACAGCGCTCCGCCGCAGAACGACGGCCCGATGTCGCAGCTGCTCATCTACTCGCAGAGGAAGCTGGTGGAGGAGGCGACGGTCGGCGGGCAGGTCGTGCCAACGCCGCAGTACATGGTGGCGAACGTGCACAATCAGAAGACGGTGTCCGCCAACGTGATGCAACCGTTCACCGTCGAGGACACGAGTGTGTACAACGCGAAACAGTTCAAGAACCCTTACTACGCGATCTACCCGAATATGTAA
Protein Sequence
MEVVNDDEMVNNLAHVERLAGNECRTCLQSCTEACQLFQNNDGIPEKLMDIAAVQVEEGDGLPACICLSCYRLLNLSYNFKRQIQDADVRLRGILKLQAHPVPHDKPHTNGATVKYIVTDIISNVTSCTKDDLVKQEIYVAHDIVTFHDTTVPSNARVNDEESRISQEFLRKTDEIELEQNEEDSPYDALKENVRNTELEVTFGQTHAKEMLAGALDDHSSHLSAPSTNDKCVKQEDMMLTQGNDASGNLAEDSRMEDLLKIGDKSDVSLEDLTDHDVSKALGTDGQDIKGGANCSDDEEKPLICRTARQRCLHCIKSFATKLALQRHMIVHKHKTKLRYVCHICDKQFSNIAKLKSHVRSSHEARKADVEVPQENNAQEKRANSKTSVKLTRNCSNALVDSTREEKRNFKFTCKVCSKQFIYQKSFISHAKSHPEYNEETTTSDDVLEQSANKANEQRDKAPVFRENESEEEEEEDDEDDNDNELPIESLQCTQCGKLFATKRNLKRHISTHSGLKFNCSTCGKGFSRVDKLKDHEQSKHKEEIFGNTDDEDDDEEDNENKVNENSESRKKDRHNRPHTCTLCPKAFAQAQSLANHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCNVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICTKSFRRLTSLNEHTYTHTGQRPYACKLCTKRYNNAGSLYAHTKKCKTQQLTGTTTTYAVSADSAPPQNDGPMSQLLIYSQRKLVEEATVGGQVVPTPQYMVANVHNQKTVSANVMQPFTVEDTSVYNAKQFKNPYYAIYPNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01087377;
90% Identity
-
80% Identity
-