Obru006890.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Odontomachus brunneus
Gene Symbol
-
Assembly
GCA_010583005.1
Location
NW:3300555-3305828[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00018 0.011 15.5 4.7 2 23 374 395 373 395 0.97
2 15 0.00031 0.02 14.7 1.6 2 23 402 424 401 424 0.95
3 15 2.8e-06 0.00018 21.2 1.5 2 23 518 539 517 539 0.97
4 15 4.9e-06 0.00032 20.4 1.8 1 23 545 567 545 567 0.98
5 15 0.00019 0.012 15.4 1.6 1 23 573 595 573 595 0.98
6 15 2.9e-06 0.00019 21.1 1.3 1 23 611 633 611 633 0.98
7 15 1.3e-06 8.4e-05 22.2 1.3 1 23 639 661 639 661 0.97
8 15 7.5e-06 0.00048 19.8 2.4 1 23 667 689 667 689 0.98
9 15 0.0011 0.068 13.1 0.2 1 23 695 717 695 717 0.99
10 15 3.3e-05 0.0021 17.8 1.1 1 23 723 746 723 746 0.92
11 15 1.5e-05 0.00095 18.9 1.3 1 23 752 774 752 774 0.98
12 15 0.00033 0.021 14.7 4.7 1 23 780 802 780 802 0.98
13 15 4.2e-06 0.00027 20.6 0.4 1 23 808 831 808 831 0.97
14 15 3.3e-06 0.00021 21.0 0.6 1 23 837 859 837 859 0.96
15 15 7.1e-07 4.6e-05 23.0 4.8 1 23 865 887 865 887 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGAATAAAGAAATTCCACTGACTTTGGAATGGATGCCACAGAATACGTACATACACAATTCCTTGGATCATCTGTTGCCAGAAGATCAAAATCAGCGCAATTTTGTATTCATAAAACAGGAAACAGAGTTCCTTGATAATACTTTGAATACTGTACAGAATGTTTGCACAGTGCGTCTGCATGAAATTTCATCTAAAGAGGACAAGGAAATCAAGCAACTAAATAACCATTCAAATGCGACACTTTCTCTAACAGACTGTCCAAGTGAATCTCCAAAAAAACTGACTGAAGTTCCTGACAGATTATTTAACAGAGGCCGTGTTGACGTGATAGAGATGTCGATGGATCCGTCTGGCTATAAATACATCTTTATTTATGAAGATCAGCAATCCAAGTTTACTACACTAAAAGCTCTACGCAGTGATACAGCCAAAGAGGTTGCAACAAAATTGTTAGATGTATTGGCGATTTTAGGGGCACCGCAGGTGCTGCAGAGTGGCAATGGATCTAAGTTTGCTAAACAAGTTGTGTATGAGTTACGTACACTGTGGAACGATTTCCTCATATTGTACGAGGACGCGCCTAAATGTGAAGTTAGCTGCAAGAATTTTAAAAGCTCGCTTGAATCCTGGATGAAAAAGAATCCGACCAGGACATGGCGTGAAGGGCTGAATTTCGTGCAAATTCTTCATAACACGACATATCGTTGTAAGAACGGCAAAGTCCCGTGCGACGTGTTGTTCGGACGAAACATGCGCGACAGATTTCCTGAAGTCGGTACAGAGACAGGTACGAAGGAAGAATGGGTCGAATGTTCGTCGAGTAGAAAAAACGAAGATACGATCGCAACAACAAGAGACACGCAGAACACATCGGATGATGTCAATGTACGGATAACGaaTGACGAAGAGACCAACAACACGCAAAGCGCACAGAGTCAAAATAAACCTACGAAGAGTAACGATTTAAACTATTTGAACGACTCCAGTCTCGTTAACATGAATGACAAAACTCTTGCAAACAATACGCGAACGATTCATCCGACACGCAGCGATGAAACAAATGTGAAAGACGAATTGAAAGTCGAGGACGCACAATCTCTGAAATGCAAATACTGTCAGAAGCAATACATGAAACTGGGCCATTTGAAAAATCATATGAGGAATCATAAGACGGAACGGATCCTCAGATGCAAACTATGCAGTAAAAAATTCAGCGTACCGAGGTTGTACGTCAAGCATATGAAGCAATCGCATGATAAGCAGGATAAGTTGCCCGAGATAGGGAGAGATTGTGCCGTCCGAAGAAGCACCAGAAGCAATGTCAACGCTGTCGCGAGAACCGATGAAGTAAAGGAAGAAGTTCAAGAGTCGCACGAGATATCAGATCTCAACGCAATGAAGGAGGATCGGGACACGTCATCGTTGGACGTTGTCGTCGGGGACTCGTGCGGCAAGACCGTGAAGAATTCGAATTCCAGCGGCCGACGGAAATTGTCCGCGGACAGCCGAGTGTCCAAGATACAATGCACTCTGCAGTGCACATACTGCAAGCAGAAGTTCAGCTTCCCGAGCGTGCTGGAGAGGCACATGCGATCGCACACGAACGAGCGGCCGTACGTGTGCGAGGTGTGTAACAAGAGCTTCAAGCAGCTCGGCCACCTAAGCCAGCACTCGCTCACGCACAATGATTATCGCTCGTTCCAGTGCACAGTGTGCGGCGTCAAGTTCGACTCCCTGGAGACGCTGAAGGAACACACGCACTCGCACCGCAGTGACGCGATCACGCCAAAGATGCGTGACGTGTACCGTTTGTTCGAGTGCGACAGCTGCAAGAAGGTCTTCACCACGAAGAGCGTGCTGGAGCGGCACATATTCACACATACACAGGAGCGCCAGTTCGACTGCAAAGTGTGCGGCAAGCGTTTCAAGCAGGCCGGTCACGTGAAGTCGCACATGTTGGTGCACACGGGCGAACGTCGCTTTCAATGCACTGTCTGCTCCAAACGCTTCAGCCTGTCAAACTCGTTGAAAAAGCACATGTACGTGCACAACGGCGAGAAACCGTACCAGTGCGACGTGTGCGGCGCGCGTTTCCTGGAGAAACGCAACCTCAACGGCCATCTGTTGACACATACCAACGAGCGGCCgtattgctgcaagatctgcGGCAAGCGCTATACTCTGGCGGACACGCTGCGCCGACACGTGAGTGCCGCGCACGAGGATGGGCGCACCTATCAATGCGAAATCTGCGCCAAGATGTTCAAGCAGCTGGCGCACTTATCGGTGCATAAGAAGGTGCACAACGACGAGCGGCCGTTCCAGTGTCACCTCTGTGAGAAGAATTTTAAGCATAAGAATGTGCTCAAGTCGCATTTGGCGATCCATGCGAACGTCCGACCGTTTGAATGCGACGTTTGCAAGGCCACGTTCGTCCGAAAGACGAATCTGCAGACGCATATCTCGTCCGCGCACATGAACGAGCGTCCGTACGTCTGCACTATTTGCGGCAAGCGCTTCAAACAGATCAGCCACTTGAACGGCCACGTGGTAGTGCACAGCAACCTAATGCCATACAAATGCGACTACTGCGACCGCCGCTGCAATCGCCTGGACAATCTGAAGAAACATATGCGTCTGCACACGAAGAACAAGGAGTAG
Protein Sequence
MTKIRMNKEIPLTLEWMPQNTYIHNSLDHLLPEDQNQRNFVFIKQETEFLDNTLNTVQNVCTVRLHEISSKEDKEIKQLNNHSNATLSLTDCPSESPKKLTEVPDRLFNRGRVDVIEMSMDPSGYKYIFIYEDQQSKFTTLKALRSDTAKEVATKLLDVLAILGAPQVLQSGNGSKFAKQVVYELRTLWNDFLILYEDAPKCEVSCKNFKSSLESWMKKNPTRTWREGLNFVQILHNTTYRCKNGKVPCDVLFGRNMRDRFPEVGTETGTKEEWVECSSSRKNEDTIATTRDTQNTSDDVNVRITNDEETNNTQSAQSQNKPTKSNDLNYLNDSSLVNMNDKTLANNTRTIHPTRSDETNVKDELKVEDAQSLKCKYCQKQYMKLGHLKNHMRNHKTERILRCKLCSKKFSVPRLYVKHMKQSHDKQDKLPEIGRDCAVRRSTRSNVNAVARTDEVKEEVQESHEISDLNAMKEDRDTSSLDVVVGDSCGKTVKNSNSSGRRKLSADSRVSKIQCTLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHNDYRSFQCTVCGVKFDSLETLKEHTHSHRSDAITPKMRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQFDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYVCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00452714;
90% Identity
-
80% Identity
-