Dqua003899.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dinoponera quadriceps
Gene Symbol
Snai1
Assembly
GCA_001313825.1
Location
NW:1427537-1432361[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 4.4e-05 0.0026 17.4 4.8 2 23 374 395 373 395 0.97
2 15 0.00018 0.01 15.5 1.0 2 23 402 424 401 424 0.94
3 15 2.7e-06 0.00016 21.2 1.5 2 23 511 532 510 532 0.97
4 15 1.2e-05 0.00071 19.1 3.6 1 23 538 560 538 561 0.96
5 15 0.00014 0.0082 15.8 2.1 1 23 566 588 566 588 0.98
6 15 0.00019 0.011 15.4 3.4 1 23 602 624 602 624 0.97
7 15 1.3e-06 7.5e-05 22.2 1.3 1 23 630 652 630 652 0.97
8 15 7.3e-06 0.00043 19.8 2.4 1 23 658 680 658 680 0.98
9 15 0.001 0.06 13.1 0.2 1 23 686 708 686 708 0.99
10 15 3.2e-05 0.0019 17.8 1.1 1 23 714 737 714 737 0.92
11 15 1.4e-05 0.00085 18.9 1.3 1 23 743 765 743 765 0.98
12 15 0.00032 0.019 14.7 4.7 1 23 771 793 771 793 0.98
13 15 4e-06 0.00024 20.6 0.4 1 23 799 822 799 822 0.97
14 15 7e-06 0.00041 19.9 0.5 1 23 828 850 828 850 0.95
15 15 6.9e-07 4.1e-05 23.0 4.8 1 23 856 878 856 878 0.99

Sequence Information

Coding Sequence
ATGACAAAAATAAGAATGAATAAAGAAATGCCGTTGAGCTTGGAGTGGATGCCGCAGAGCACGTACATGCACAATTCCTTGGACCATCTATTGCCAGGAGATCGAAATCAGCGCAATTTTGTGTTCATAAAGCAGGAATCAGAATTTCTTGAAAATACTTTGAACGTCACACCATCTGTACAAAATATTGTACGTCTACATGAAGTTTCATCTAAGGAGAACAAGGAAGCCAAGCAACAAAATGACTGTTCAGATATGCCAATAACACCTGCTCAAACAGACTGTCAAAATGAATCTCCCAAAATACTGACCGAGGTCCCCGGCAGATTGTGTAGCAGAGGCTGCGTTGACGTGGTGGAGATGCCGACGGACCCAACGTCCGGCTACAAGTACTTCTTCATTTACGAAGATCAGCAATCCAAGTTCGTCGTACTGAAAGCTCTGCGCAGCGACACGGCGAAAgaggtcgccgcgaaattgtTAGACGTATTGGCGATCGTAGGGGCACCGCGGGTGCTACAGAGCGGCAATGGACGTAAGTTTGCTGAACAAGTTGTACATGAGCTACGCACTCTGTGGAACGATTACCTCATATTGCACGGGGACACGCCTAAGTGTGAAGTTAGGCGCAGGGACTTTAAGAGCTCGCTCGAATCCTGGGTGAGAGAACACCCGAGCAGGACGTGGCGCGAAGGACTGAACTTCGTGCAGATCCTTCACAACACGACTTACTGCTGTAAGAACGGCAAAATTCCGTGCGACTTGTTGTTCAGACGAAATATGCTCGACAGTTTTCACGACGTCGCCACAAAGACAGGTACGGAGAGTCTGTGGGCGGAGGAAGAGTGGATCGAACGTTCGTCGAGCAGGGAAGACGAAGGTGCGATCGCAACGACAGGAGACGCGCAGGACACGTCGGACGATATTAATGTACGTGCAACgCAGgacgaggagaacgagaaCACGCAGAGCAGGCAGGATCGAGACAAGGCTACGGGAAGCAACGACTTCAGCTTCGTCGGTGTCAAGAACGAGGCTCTCGCGAACAAcacgcgagcgacgcgcgctgACGAGACAGACGCGAAGGACGAGTCGAGAGCCGTGGACGCTCAGTCTCTGAAATGCAAGTATTGCCAGAAGCAATACATGAAACTGGGTCATCTGAAGAACCACATGAGGACTCACAAAGCGGGGCGAGTGTTGCGATGCAAGCAGTGCGGTAAAACGTTCAGCGTGCCGAGGCTGTACGACAAGCACGTGAAGCAGTCGCACGGGCAGGATAAGTTAAACGAGGAAGACTGTGTCGTTCGTCGGAGCACCAGGAGCTACGTCAACGCGTCAACGCACCTGAGGAACGTGCgggacgaggagaagaaggagatcCGAGCGTCGCGCGAGGCGGCCGACGCGGCTTCCGGCGAAGATCGCGACGCGTCGGACGCCGTCGGGGACGGCAAGACCGTGAAGAACTCGGGCGGTCGGCGGAAGCTGCCCGCGGACAGCCGCGTCTCCAAGATGCCGTGCACCCTGCAGTGCACCTACTGCAAGCAGAAGTTCAGCTTCCCGAGCGTGCTGGAGAGGCACATGCGGTCGCACACGAACGAGCGGCCGTACGTGTGCGAGGTGTGCAACAAGAGCTTCAAGCAGCTCGGCCACCTGAGCCAGCACTCGCTCACGCACCACGACTACCGCTCCTTCCAATGCACCGTCTGCGGCGTCAAGTTCGACTCCCTGGAGACGCTGAAGCAGCACACGCACTCGCACCGCGGCGACGCGCCGAAGATGCGCGACGTCTACCGGCTGTTCGAGTGCGACTGCTGCAAGAAGGTCTtcacgacgaagagcgtgctGGAGCGGCACATATTCACGCACACCCAGGAGCGGCAGTTCGACTGCAAGGTCTGCGGCAAGCGCTTCAAGCAGGCCGGCCACGTGAAGTCGCACATGCTGGTGCACACCGGCGAGCGCCGCTTCCAATGCACCGTCTGCTCCAAGCGCTTCAGCCTGTCGAACTCGCTGAAGAAGCACATGTACGTGCACAACGGCGAGAAGCCCTACCAGTGCGACGTGTGCGGCGCCCGGTTCCTCGAGAAGCGCAACCTCAACGGGCACCTGCTCACGCACACCAACGAGCGGCCGTATTGCTGCAAGATCTGCGGCAAGCGTTACACCTTGGCGGACACGCTGCGCCGGCACGTGAGCGCCGCCCACGAGGACGGGCGCACCTACCAGTGCGAGATCTGCGCCAAGATGTTCAAACAGCTGGCCCACTTGTCGGTGCACAAGAAGGTGCACAACGACGAGCGGCCGTTCCAATGCCACCTCTGCGAGAAGAACTTCAAGCACAAGAACGTACTGAAGTCGCACCTGGCGATACACGCGAACGTACGGCCCTTCGAGTGCGACGTCTGCAAGGCCACCTTCGTGCGCAAGACCAATCTGCAGACGCACATCTCGTCCGCGCACATGAACGAGCGACCCTACGCCTGCACCATATGCGGCAAGCGTTTCAAGCAGATCAGCCACCTCAACGGCCACGTGGTCGTGCACAGCAACCTGATGCCGTACAAATGCGACTACTGCGACCGGCGCTGCAACCGGCTGGACAACCTGAAGAAGCACATGCGCCTGCACACGAAGAACAAGGAGTGA
Protein Sequence
MTKIRMNKEMPLSLEWMPQSTYMHNSLDHLLPGDRNQRNFVFIKQESEFLENTLNVTPSVQNIVRLHEVSSKENKEAKQQNDCSDMPITPAQTDCQNESPKILTEVPGRLCSRGCVDVVEMPTDPTSGYKYFFIYEDQQSKFVVLKALRSDTAKEVAAKLLDVLAIVGAPRVLQSGNGRKFAEQVVHELRTLWNDYLILHGDTPKCEVRRRDFKSSLESWVREHPSRTWREGLNFVQILHNTTYCCKNGKIPCDLLFRRNMLDSFHDVATKTGTESLWAEEEWIERSSSREDEGAIATTGDAQDTSDDINVRATQDEENENTQSRQDRDKATGSNDFSFVGVKNEALANNTRATRADETDAKDESRAVDAQSLKCKYCQKQYMKLGHLKNHMRTHKAGRVLRCKQCGKTFSVPRLYDKHVKQSHGQDKLNEEDCVVRRSTRSYVNASTHLRNVRDEEKKEIRASREAADAASGEDRDASDAVGDGKTVKNSGGRRKLPADSRVSKMPCTLQCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLETLKQHTHSHRGDAPKMRDVYRLFECDCCKKVFTTKSVLERHIFTHTQERQFDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYACTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01087367;
90% Identity
-
80% Identity
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