Obru007397.1
Basic Information
- Insect
- Odontomachus brunneus
- Gene Symbol
- bab2
- Assembly
- GCA_010583005.1
- Location
- NW:1624532-1676784[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.5e-13 2.2e-10 39.5 0.0 1 39 392 431 392 435 0.90 2 4 1.8e-12 2.5e-09 36.0 0.1 2 39 447 484 446 487 0.94 3 4 6.5e-19 9.3e-16 56.6 0.0 2 45 502 546 501 546 0.97 4 4 5.1e-19 7.3e-16 57.0 0.1 1 42 553 595 553 597 0.96
Sequence Information
- Coding Sequence
- ATGGAGACAGATCGTTATTGGGGCGTGCACTACAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGCTGGAACAACTACCAGTCGAATATGACATCGATGTTCCACCAGCTTCTACAGACCGAGGCTTTCGTCGACGTCACCCTAGTATGCAACGAGGCTTCATTAAAGGCGCACAAGGTGGTGCTGTCGGCCTGCAGTTCCTACTTCCAGAAGCTGCTGCTGTCGAATCCCTGTAAACATCCGACGATCATCATGCCGCAGGACGTGTGCTTCACAGATCTCAAGTTCATCATCGAGTTCGTTTATCGCGGGGAGATCGACGTCTCGCAAGCGGAGCTTCAGTCACTTTTGAAGACGGCCAACCAGTTGAAGATCAAGGCCCTCTGCGAGGAGAACCGAGACGACCCGCCGTCCGTGAGCCTGAGCTCGTCACCGAGGGAGTCCGGCACCCCGAGATTGAACTACACGAAGTTGAAAAAGCACCATCCGCGGTACAAGCGACCAAGAACCACGTTCGAGCCACGCGCCACCGACCCGAGACATTTCGAGCGCTATAAAGAAGAGGAGGTCAACGAAGATTACAGACGCGATAATAAAGAGAACCACCAGGACTGGCAAGTCGAAGATGAAGAGTGCACGGAGACACCAACAGCAGCAGTAGTACTAGATACCTGCCAgcgcaacaacaacaataacaataacaacaacaacggtAACGGCGcgaataacaacaacaacaacaacgGTGACATGTTCTGTCACACAGGGCTAGGTCACTATGGCCATCATCCGGATCCCGGAGAGGTCGATCTACCCCCTGAGACGCAGCCCACTCCGCCCAGCGCTACCTTAGTCGGCACCACCATCACCCACCTAAGAGATCCGGATCATCATTCTACAGAGATTCAGAATTGCGACAACGTCAAGATAAAATTCGAGACGTTACACACGATGGACTCATCGGACACGATTGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAGAATGCAGCCGACAGCGACAACATGATGATGATAACGCCGGAGCTGCTCGGGCTGATGCCGTCGGGCAGTTCCGTGCACTCGGACTCGGGCGAGAATAATTCGAGGGGCCACTCCGGACAGTCCAGCTCGCACCATCACGGCTCGAAATCGTGGACGCAGGAGGACATGGACGCGGCTCTGGAAGCCTTGAGGAACCATGACATGAGCCTCACGAAAGCCTCTTCAACATTCGGTATTCCGTCGACGACACTTTGGCAACGGGCGCATCGACTGGGCATCGACACGCCGAAAAAAGACGGCCCTACAAAATCCTGGAGCGACGAGAGCCTGAACAACGCGCTAGAAGCGTTGCGTACCGGCACCATCTCGGCCAATAAAGCGTCCAAGGCGTTTGGCATACCCTCCAGCACGTTATACAAGATCGCCAGGAGAGAAGGTATCAGGCTGGCTGCGCCGTTCAACGCGAGTCCCACGACGTGGTCGCCCGCCGACCTGGATCGCGCACTAGAAGCGATACGATCCGGTCAGACGTCCGTGCAGAGAGCGTCCACCGAATTCGGCATCCCGACTGGCACGCTGTACGGACGATGTAAGCGGGAGGGGATCGAGCTCAGCAGAAGTAACCCCACACCGTGGAGCGAAGACGCGATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATCAATCAAGCGGCGATCCACTACAACCTGCCGTATTCCTCGCTATACGGACGCTTTAAAAGGGGGAAGTACGAGGAGTCGGTGGTCGGTGAGATCTCGCAAGACGGCAGCAGTCCGCACTTCCATCAGAGTCCCAACCAGAATCATTCGTCTGCCCTTCCGGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSMFHQLLQTEAFVDVTLVCNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFTDLKFIIEFVYRGEIDVSQAELQSLLKTANQLKIKALCEENRDDPPSVSLSSSPRESGTPRLNYTKLKKHHPRYKRPRTTFEPRATDPRHFERYKEEEVNEDYRRDNKENHQDWQVEDEECTETPTAAVVLDTCQRNNNNNNNNNNGNGANNNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDNVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASSTFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEESVVGEISQDGSSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_01520386;
- 80% Identity
- iTF_01087317;