Basic Information

Insect: Odontocerum albicorne
Gene Symbol: PRDM16
Assembly: GCA_949825065.1
Location: OX463867.1:9108705-9116669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.8e-06 0.00022 22.5 0.2 1 23 405 427 405 427 0.98

2 12 3.4e-06 0.00026 22.2 1.8 1 23 458 480 458 480 0.98

3 12 1.6e-06 0.00012 23.3 0.4 1 23 517 539 517 539 0.98

4 12 2.8e-06 0.00022 22.5 0.2 1 23 576 598 576 598 0.98

5 12 1.6e-06 0.00012 23.3 0.4 1 23 651 673 651 673 0.98

6 12 2.8e-06 0.00022 22.5 0.2 1 23 710 732 710 732 0.98

7 12 2.8e-06 0.00022 22.5 0.2 1 23 763 785 763 785 0.98

8 12 2.8e-06 0.00022 22.5 0.2 1 23 803 825 803 825 0.98

9 12 2.8e-06 0.00022 22.5 0.2 1 23 856 878 856 878 0.98

10 12 2.8e-06 0.00022 22.5 0.2 1 23 915 937 915 937 0.98

11 12 2.8e-06 0.00022 22.5 0.2 1 23 968 990 968 990 0.98

12 12 5e-06 0.00039 21.7 0.2 1 23 1027 1049 1027 1049 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.8e-06	0.00022	22.5	0.2	1	23	405	427	405	427	0.98
2	12	3.4e-06	0.00026	22.2	1.8	1	23	458	480	458	480	0.98
3	12	1.6e-06	0.00012	23.3	0.4	1	23	517	539	517	539	0.98
4	12	2.8e-06	0.00022	22.5	0.2	1	23	576	598	576	598	0.98
5	12	1.6e-06	0.00012	23.3	0.4	1	23	651	673	651	673	0.98
6	12	2.8e-06	0.00022	22.5	0.2	1	23	710	732	710	732	0.98
7	12	2.8e-06	0.00022	22.5	0.2	1	23	763	785	763	785	0.98
8	12	2.8e-06	0.00022	22.5	0.2	1	23	803	825	803	825	0.98
9	12	2.8e-06	0.00022	22.5	0.2	1	23	856	878	856	878	0.98
10	12	2.8e-06	0.00022	22.5	0.2	1	23	915	937	915	937	0.98
11	12	2.8e-06	0.00022	22.5	0.2	1	23	968	990	968	990	0.98
12	12	5e-06	0.00039	21.7	0.2	1	23	1027	1049	1027	1049	0.98

Sequence Information

Coding Sequence: ATGAACTCCCGGGAAGTTTTCCCCAAATGGGAACATGAAGAAGCCTCGGTCGTATCTGTGGAAGAGGAGACAGCGGATGCTGAACAGCTCGGGACGTTGTCGGTGCCGGAGTACGGTATAGACATAGAAGAGACTGATGTCAAGGCGGAGTGCGCTCGACTCAACAGTGCAGGGGCTGGACACACACGCACAGAGTACAAACTACCTGACACGGGCTTTGAAAGTAATGCTGCTGGAGAGGACAGAGAGGATGCTGAACAGCTCGGGACGTTGTCGGTGCCGGAGTACGGTATAGACATAGAAGAGACTGATGTCAAGGCGGAGTGCGCTCGACTCAACAGTGCAGGGGCTGGACACACACGCACAGAGTACAAACTACCTGACACGGGCTTTGAAAGTAATGCTGCTGGAGAGGACAGAGAGGATGCTGAACAGCTCGGGACGTTGTCGGTGCCGGAGTACGGTATAGACATAGAAGAGACTGATGTCAAGGCGGAGTGCGCTCGACTCAACAGTGCAGGGGCTGGACACACACGCACAGAGTACAAACTACCTGACACGGGCTTTGAAAGTAATGCTGCTGGAGAGGACAGAGAGGATGCTGAACAGCTCGGGACGTTGTCGGTGCCGGAGTACGGTATAGACATAGAAGAGACTGATGTCAAGGCGGAGTGCGCTCGACTCAACAGTGCAGGGGCTGGACACACACGCACAGAGTACAAACTACCTGACACGGGCTTTGAAAGTAATGCTGCTGGAGCGCACAGAGAGGATGCTGAACAGCTCGGGACGTTGTCGGTGCCGGAGTACGGTATAGACATAGAAGAGACTGATGTCAAGGCGGAGTGCGCTCGACTCAACAGTGCAGGGGCTGGACACACACGCACAGAGTACAGCAGAGTGTCGAGTTTCATGAGAATTATTTGGCCTCCAGAACTACCTGACACGGGCTTTGAAAGTAATGCTGCTGGAGAGGACAGAGAGGATGCTGAACAGCTCGGGACGTTGTCGGTGCCGGAGTACGGTATAGACATAGAAGAGACTGATGTCAAGGCGGAGTGCGCTCGACTCAACAGTGCAGGGGCTGGACACACACGCACAGAGTACAattGTGACATCACATCAGGCAGAGTGTCGAGTTTCATGAGAATTATTTGGCCTCCAGAACTACATGACGCTGGCTCTGGAAGTGATGCTGCTACTGGGACACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTAAGTGTGACCACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGATGTTGACATCTCATCAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTAAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGATGTTGACATCTCATCAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGAAGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGtagacagaaaGGGCGGAATGCTTAACTTCAAACAACCTTATATTTTAGATGTTGACATCTCATCAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTAAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGATGTTGACATCTCATCAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGAAGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAATGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGAACTACATGACGCGGGCTCTGGAAATGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAATGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAgATGTTGACATCTCATCAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAATGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAGTCAGTTTAATAAACCACATCAGGAACCACAAAGATGTTGACATCTCATCAGGCAGAGTCTCGAGTGTCATGAGTATTAATTGGCCTCCAGAACTACATGACGCGGGCTCTGGAAGTGATGCTGCTACTGGGAAACCCTTTGAGTGTGATGACTGTGGGGAGATGTACAAAAGCAAAATCAGTTTAATAAACCACATCAGGAACCACAAAGGCAAATTTTAA
Protein Sequence: MNSREVFPKWEHEEASVVSVEEETADAEQLGTLSVPEYGIDIEETDVKAECARLNSAGAGHTRTEYKLPDTGFESNAAGEDREDAEQLGTLSVPEYGIDIEETDVKAECARLNSAGAGHTRTEYKLPDTGFESNAAGEDREDAEQLGTLSVPEYGIDIEETDVKAECARLNSAGAGHTRTEYKLPDTGFESNAAGEDREDAEQLGTLSVPEYGIDIEETDVKAECARLNSAGAGHTRTEYKLPDTGFESNAAGAHREDAEQLGTLSVPEYGIDIEETDVKAECARLNSAGAGHTRTEYSRVSSFMRIIWPPELPDTGFESNAAGEDREDAEQLGTLSVPEYGIDIEETDVKAECARLNSAGAGHTRTEYNCDITSGRVSSFMRIIWPPELHDAGSGSDAATGTPFECDDCGEMYKSKVSLINHIRNHKGRVSSVMSINWPPELHDAGSGSDAATGKPFKCDHCGEMYKSKVSLINHIRNHKDVDISSGRVSSVMSINWPPELHDAGSGSDAATGKPFKCDDCGEMYKSKVSLINHIRNHKDVDISSGRVSSVMSINWPPELHEAGSGSDAATGKPFECDDCGEMYKSKVSLINHIRNHKVDRKGGMLNFKQPYILDVDISSGRVSSVMSINWPPELHDAGSGSDAATGKPFKCDDCGEMYKSKVSLINHIRNHKDVDISSGRVSSVMSINWPPELHEAGSGSDAATGKPFECDDCGEMYKSKVSLINHIRNHKGRVSSVMSINWPPELHDAGSGNDAATGKPFECDDCGEMYKSKVSLINHIRNHKELHDAGSGNDAATGKPFECDDCGEMYKSKVSLINHIRNHKGRVSSVMSINWPPELHDAGSGNDAATGKPFECDDCGEMYKSKVSLINHIRNHKDVDISSGRVSSVMSINWPPELHDAGSGNDAATGKPFECDDCGEMYKSKVSLINHIRNHKGRVSSVMSINWPPELHDAGSGSDAATGKPFECDDCGEMYKSKVSLINHIRNHKDVDISSGRVSSVMSINWPPELHDAGSGSDAATGKPFECDDCGEMYKSKISLINHIRNHKGKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01086897;
90% Identity: iTF_01086897;
80% Identity: iTF_01086897;