Ople039151.1
Basic Information
- Insect
- Ochropleura plecta
- Gene Symbol
- -
- Assembly
- GCA_905475445.1
- Location
- FR997751.1:8271591-8283414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.39 47 6.0 0.4 5 22 283 300 281 300 0.94 2 13 0.0029 0.35 12.7 0.3 1 23 311 334 311 334 0.92 3 13 0.0013 0.15 13.8 2.1 2 21 372 391 371 391 0.95 4 13 1.2 1.5e+02 4.4 1.4 1 19 653 670 653 673 0.84 5 13 3.2 3.8e+02 3.1 3.4 1 23 684 706 684 706 0.94 6 13 0.091 11 8.0 0.1 3 23 713 733 712 733 0.98 7 13 6.1 7.3e+02 2.2 0.7 1 19 756 773 756 777 0.70 8 13 0.00093 0.11 14.2 0.2 2 23 854 875 853 875 0.97 9 13 1.5e-07 1.8e-05 26.2 2.4 1 23 881 903 881 903 0.99 10 13 0.00023 0.028 16.1 0.3 3 23 910 930 908 930 0.96 11 13 0.0014 0.17 13.6 2.0 3 23 938 959 936 959 0.95 12 13 0.4 48 5.9 0.2 1 20 966 985 966 989 0.90 13 13 0.00046 0.055 15.2 0.9 3 23 998 1019 997 1019 0.97
Sequence Information
- Coding Sequence
- ATGTGTcttccagtcgcaaaaatacctaaaaaaacTAACCCACCTACCATTAAactgaaaacaacaaaaaaggtGGTTAATCAACCAGAACCCATCATACGTAAAAAATCTACCACTGCACAACTAGAAGAAGCATCTATTCCAGAACCACAAGAAGTTGACACAAGtgttcttaaaaaaatcaacgCATCGTCCGCCAAAGAAGATGTCGAACCAAAATTAAAAGTCTCCCCAAGAAAATTCGAGATTAATATCGAGGTAGAATCATGTGATAACGACGATGACGAATTCGCTAGTATCAGAGTCGAAAATCAATTGACACGACTTAAAGATTTACTCCGTACAAAAATTCGTACAGAACCTATAACTCTCTCTAGAGATGTCATACTTCATGAAGCAGATAACATTCTAGAAACTTCAACAGCAGTCGCTGATAAAGTCTTAAACATTTATCTACGGAATACAATAGGGTACGAACAGAAACAAAAGCTAAAAACGAACgggtttgaaaataaaatccaGAAAGCATTAGATGATTGGAAAACATGGCAATTCCGAAGTTTCCATCGAGAAGATCCTCTGTTCTACAAATGCTACGTTTGTACCAGATCTTGGTGGCTTCTCTCCGATTTTCGCAACCATCTATCTTCAGAACACCCAGATGATGACATGATCAAGATTGTATTGGAGAAATATGAAACGCATGAGGCGAATTTGATAGCCTACCATGACAGACTCGTTGTCATCAATGATATATTCACCGAAGGTTTTTGCCACCGTTGCGGTAAAAATTATGCTGCTCATGAATTAGGAGAGAGATTTCAGGAAAAGTTTTACAAGAACGATGGTTGTACTAAGCAGTTTTTTACTTGCATGGGTCTCCGAGATCATATGAAAACGTGCCCTGTTTGCAAACCAGATGAAAAAACATTCCAATGTGACATTTGCAAGTCAAGATTTGACACAGAAGATGGATTGAACAATCATTTAGTGTTGTCACATTCTGTTCGCTCTGATATACCTATTATGACACACTATAATACCTGCATGAAGTGTTCTGAAAGATATACTTGTAGATATTTGCACAAATGTTGGCAGAAAGATCCTCATTGTGAATGCCCACACTGTTTCAGAATATTCTCGAATAACATGTCTTTAGAACTGCATATGAAGCCTTCAAATAAACCTTATGAATGTGCAGTTTGCGATTTGAAGATGTCGTTTAGTTGCATGAAGTATGAACATATGTTATGTCATACGGATAAATATATGACAGTAAGAAAATGTGATAAATGTAAGGGTTTAAACGTCTTTCTGGATAATGATGACGCTGCCGCCCATTTTAAATTGATGCATGAGGCAGAGGATAAGCAACAGCAAATAGTTTTTCCAAAACTTGTAGTTCCATCGTTCTGCGTATATCAAAGCTTAGAAACACCTAAATTGACAGAACAAGAATCGTTAGAAGAACGAGAATCAATGTCAAAGGAACAAGAATCACCAACAAAATACAATCACGAATTACATGACTACAACGAGTCATCTTCAGAGTTTTTAATGGATAATGTGGTAGTCAAAGAAGAACCAGAGGACTTTGAAAATGAAGAATTTGGAGAAGTGAGCAGTCTTCTTATCAAAGAAGAACCTCTAGAAGGAACAGAAAGTGAAGAAAATGAAACAGAAAACTTTAACCACCAAATATCTGTTAAAGAAGAATTAATTGAAGAAGAATTCGATGGAGACATAATCAAACTTAACTTTAACATCGAAGATTTGTTAGTGAAGCAAGAATCTTTTACAAATGATGATGGAGAAGAGTATTCTCAAGACACAATACAATCCCAAACAGAAGATGATGACTCACAAGAACTTCCTCTACCAATAAAAGAAGAAACGGATAGTGTGCTAGAACCAGTTTGTAGCATCCAAGGAGACAAGACTAAAAAGGAGAATGTATACCGTTGCACAAAATGTGGATTCACTGCAAACCATAAACAGTATAAAGCTCATGTCGAGTACGATTGTAAAAACCAAATTAACCAAAGAGATTACTACTGTTCGAAATGTGCCTGCACATTTAACTCTATGAAGAAGTATTTGGGTCATCTTGAATTGCATGGGTACAAGAACAATGCTTGTCCGGACTGTTTGGTTCAGTTTCAAAATTATACGCTTCTTGGAACACACATTCAAacacatattaaacaaaatttcGTTCGCGTTAAGATGATCACGCATGCAGGGAAAGTAATGACTAAACCAGATTTCCAATGCAAGAAATGTTCAGAAACAATATCTATTAAGGACTTCTTTGAACATTGGGAACTGCATATTAACGCCAATCCTACTCATCCTATCAAAGTGACTTCCAGGCCTCCACAGAAGAGGACAGAACGACATGAAATTATTATGAAGGAGAGCATTGCACGTCTACACAAAATGCCAAAGGAATGCAACCACTGTCATCGATGGTTTAAGCGTGTCAACGAATGCAAGAGGCACATCATAGAACATCTACTAGCAGACGCGTACAATCACAAACACATATACAACGAACTAAAATGTCAAATCTGTGAAACAGGATTCGCTGTACCCGAGAAATATAAGCAACACATGCGCGATCACGCGTCGTTACCCGTCTATAAGTGTGAAATATGTGATAGGACATTCAGTGATTCAAGTAATTTTACTAAGcacaaaaaagtacataatttgAGAGTGATTATCTGTGATTTGTGTGGGAAGAAGTTCCAGTCTAAAGTTTCTTTAGGAAAACATATTGAGAAGCATAAAACAACAGAACCAATCAATTGCGAGTTATGCGGAAAAATCTTCCATTTCGAGTCTTCGTACCGTCGCCATGTCCGATACTTCCACGAAAAAACCACACATGGATTCCGCTGCGCTAACTGTGGACTACGATTTGACAGTTTAAAGGGCAAATGGGACCATATGTGGAACATCCACAAGGAAAGGAAGCAAAAGGCAGACTGCCCTATATGCCATGAATCATTTAGAAAGTTCTCCGATGTCCGAGCCCATGCAAGGAGCAGCCATTTGATGGAAGTGTCCGTTCTGAGTGTGAAAAAAGCGACCAATTCAACGATTAATGTTGATAAGTTTTTAAAAGATGCTATGACGATAAAAGCAGGTAGATCGGAGACTTTAGTGGTCTATGATTCTGACTGA
- Protein Sequence
- MCLPVAKIPKKTNPPTIKLKTTKKVVNQPEPIIRKKSTTAQLEEASIPEPQEVDTSVLKKINASSAKEDVEPKLKVSPRKFEINIEVESCDNDDDEFASIRVENQLTRLKDLLRTKIRTEPITLSRDVILHEADNILETSTAVADKVLNIYLRNTIGYEQKQKLKTNGFENKIQKALDDWKTWQFRSFHREDPLFYKCYVCTRSWWLLSDFRNHLSSEHPDDDMIKIVLEKYETHEANLIAYHDRLVVINDIFTEGFCHRCGKNYAAHELGERFQEKFYKNDGCTKQFFTCMGLRDHMKTCPVCKPDEKTFQCDICKSRFDTEDGLNNHLVLSHSVRSDIPIMTHYNTCMKCSERYTCRYLHKCWQKDPHCECPHCFRIFSNNMSLELHMKPSNKPYECAVCDLKMSFSCMKYEHMLCHTDKYMTVRKCDKCKGLNVFLDNDDAAAHFKLMHEAEDKQQQIVFPKLVVPSFCVYQSLETPKLTEQESLEERESMSKEQESPTKYNHELHDYNESSSEFLMDNVVVKEEPEDFENEEFGEVSSLLIKEEPLEGTESEENETENFNHQISVKEELIEEEFDGDIIKLNFNIEDLLVKQESFTNDDGEEYSQDTIQSQTEDDDSQELPLPIKEETDSVLEPVCSIQGDKTKKENVYRCTKCGFTANHKQYKAHVEYDCKNQINQRDYYCSKCACTFNSMKKYLGHLELHGYKNNACPDCLVQFQNYTLLGTHIQTHIKQNFVRVKMITHAGKVMTKPDFQCKKCSETISIKDFFEHWELHINANPTHPIKVTSRPPQKRTERHEIIMKESIARLHKMPKECNHCHRWFKRVNECKRHIIEHLLADAYNHKHIYNELKCQICETGFAVPEKYKQHMRDHASLPVYKCEICDRTFSDSSNFTKHKKVHNLRVIICDLCGKKFQSKVSLGKHIEKHKTTEPINCELCGKIFHFESSYRRHVRYFHEKTTHGFRCANCGLRFDSLKGKWDHMWNIHKERKQKADCPICHESFRKFSDVRAHARSSHLMEVSVLSVKKATNSTINVDKFLKDAMTIKAGRSETLVVYDSD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084768;
- 90% Identity
- iTF_01084768;
- 80% Identity
- -