Oleu026373.1
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- -
- Assembly
- GCA_958449745.1
- Location
- OY288230.1:3328660-3343038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.7 2.1e+02 3.4 0.3 3 13 284 294 283 296 0.86 2 11 0.7 56 5.2 0.6 5 21 309 325 307 326 0.93 3 11 0.55 44 5.5 0.2 1 23 337 360 337 360 0.89 4 11 0.0032 0.26 12.5 4.2 2 21 398 417 397 418 0.94 5 11 0.95 76 4.8 1.4 1 19 678 695 678 698 0.82 6 11 9.5 7.6e+02 1.6 1.8 1 23 709 731 709 731 0.87 7 11 0.13 10 7.5 0.1 3 23 738 758 737 758 0.98 8 11 2.6 2.1e+02 3.4 1.2 1 21 781 800 781 802 0.75 9 11 0.00088 0.07 14.3 0.2 2 23 879 900 878 900 0.97 10 11 1.4e-07 1.1e-05 26.3 2.4 1 23 906 928 906 928 0.99 11 11 0.011 0.92 10.8 2.3 3 21 935 953 933 959 0.92
Sequence Information
- Coding Sequence
- ATGGCAGATACATCCCGAAAAAGATCGCGAAAAACGAAGCTAGTGCCTCGAGAGTGTGCTGTGTACGAGGATCTTGAATTGCAGCTTCCAGTGGCAAAAATACCTAAAAAGACTAACCCACCTacaattaaaacgaaaataacaaaaaaggtgGTTAAACAACCAGAACCCATCATACGTAAAAAATCTACCAATACACAACCAGAAGAAGCAGCTACTCCAGAACCACAAGAAGTTGACACAAGTGTTCTGAAAAAAATCAACGCATCGTCAGCTAAAGAAGATATCGAACCAAAATTAAAAGTCTCCCCAAGAAAATTCGAGATTAATATCGAGGTAGAATCATGTGATGATGACGATGACCAATTCGCTGGTCTCATACTCGAAAATAAATTGACACGATTTAAAGATTTACTCCGCGCAAGAATACGTACAGAACCTATAACTCTCTCAAGAGATGTCATACTTCATGAGGCAGATAACATTCTAGAAACTTCAACAGCACTTGCTGATAAAGtcttaaatatatatgtaaGGAATACAATAGGCTACGAACAGAAACAAAAGCTTAAAACGAAcggctttgaaaataaaatccagAAAGCACTAGATGACTGGAAAACCTGGCAATTCCGAAGTTTCCATCGAGAAGATCCTCTGTTCTACAAATGCTACGTTTGTACCAGATCTTGGTGGCTTCTCTCCGATTTTCGCAACCATCTATCTTCAGAACACCCAGATGATGACATGATCAAGATTGTATTAGAGAAATATGAAACGCATGAGGCGAATTTGATAGCCTACCATGACAGACTTGTTGTCATCAACGATATATTCACCGAAGGTTTTTGCCACCGTTGTGGTAAAAACTATGCTAATCATGAATTAGGAGAGAGATTCCAGCAAAAGTTTTACAAGAACGATGGTTGTACTAAGCAGTTTTTTACTTGCATGGGTCTTCGAGACCATATGAAATCGTGCCCTATTTGCAAACCAGATGAAAAAGCATTCCAATGTGATATTTGCAAGTCAAGATATGACACAGAAGATATATTGAACAATCATTTAGTGTTGTCACATTCTGTTCGCTCTGATATACCTATTATGACACACTATAATACCTGCATGAAGTGTTCGGAAAGATATTCTTGTAGATATTTGCACAAATGTTGGCGGAAAGATCCTCATTGTGAATGCCCACACTGCTTTAGAAATTTCTCGAATAACATGTCTTTAGAACTGCATATGAAGCATTCTGGACCTTACGAATGTGCAATTTGCGATTTGAAGATGTCGTTTAGTTGCATGAAGTATGACCATATGCTGTCTCATACAGATAAATATATGACAGTAAGAAAATGTGATAAATGTAAGGGTTTAAACGTCTTTCTGGATAATGAAGACGCGGCCGCACATTTTAAATTGATGCATGAAGCAGAGGATAAGCAACAGCAAATAGTTTATCCCAAACTTATAGTTCCATCGTCCTGCGTATATCAAAGCTTAGAACAACCCGAATTGACAGACCAAGAATCGTTTGAAGAACGAGAATTAACGTCAAAGGAACAAGAATGGCCAACAAAATACGATCATGAATTAAATGGCTACAACAAATCATCTTCAGAGTTTTTAATGGATGGTGTGATGGTCAAAGAAGAACCAGACGACTTTGAAAATGGAGAATTTGGAGAAGGGAGCAATCTACTTATCAAAGAAGAACCTCTAGAAGAAACAGAAAGCGAAGAAAATGAAACAGACAACTTTGACCACCAAATATCTGTTAAAGAAGAATTAATTGAAGAAGAATACGATGGAGACATAATCAAACTCAACTTTAACATCGAAGACTTGTTAGTGAAGCAAGAATCTTTTACAAATGATGACGGAGAAGAATATTCTCAAGACACAATACAATCCCAAACAGAAGACGATGACTCACAAGGACTCCCTCTACCAATAAAAGAAGAAATGGATACTGTGTTAGAACCAGTTTGTAGTATCCAAGGAGACAAGACCAAAAAGGAGAATCTGTACCGTTGCACTAAATGTGGGTTCACAGCGACCCATAAACAATATAAAGCTCATGTTGAGTATGATTGTAAAAACCAAATTAATCATAGAGATTACTATTGTTCCAAATGTGCCAACACATTTAATTCTATGAAGAAGTATTTGGGACATTTTGAATTGCATGGGTACAAGAACAAAGCTTGTCCGGAATGTTTGgttcaatttcaaaattatacGCTCCTTGGGACACACATACAGACACATATTAAACAGAATTTTGTTCGTGTCAAGATGATCACGCATGCAGGGAAAGCAATGACTAAACCAGATTTCCAATGCAAGAAATGTTCAGAAACAACATCTATTAAGGACTTCTTTGAACATTGGGAACTGCATATCAACGCTAACCCCACTCATCCTATCAAAGTGACTTCCAGGCCTCCACAGAAGAGGGTAGAACGACACGAAATTATAATGAAGGAGTGCATTGCACGTCTACACAAAATGCCAAAAGAATGCAACCATTGTCATCGATGGTTTAAACGCGTCAACGAATGCAAGAGGCACATCATAGAACATCTACTGGCAGACGCGTACAACCACAAACACATATACAACGAATTAAAATGTCAAATCTGTGAAACAGGATTCGCTGTACCCGAGAAATATAAGCAACACATGCGCGATCACGCGTCTCTACCCGTCTATAAGTGTGAAATATGTGATAGGACATTCAGTGATTCAAGTAATTTTACTAAGCATAAAAAAGTGCATAATTTGAGAGTGATTATTTGTGATTTGTGTGGGAAGAAGTTCCAGTCGAAAGTATCTTTAGGGAAACATATTGAGGTACGTTGTTCCCATTGTATATTTGAAACTTTAAGGTTTGTGAAGAATAGTTTTGTGGCTGAAGCTGATTTTGAAGCTGATGATGGACCCACTTGGATGTTTAAATCTTTTAGAGTCGATGCACCTAATGTTGGAGGGCAATTCGGTCAGTTGTGA
- Protein Sequence
- MADTSRKRSRKTKLVPRECAVYEDLELQLPVAKIPKKTNPPTIKTKITKKVVKQPEPIIRKKSTNTQPEEAATPEPQEVDTSVLKKINASSAKEDIEPKLKVSPRKFEINIEVESCDDDDDQFAGLILENKLTRFKDLLRARIRTEPITLSRDVILHEADNILETSTALADKVLNIYVRNTIGYEQKQKLKTNGFENKIQKALDDWKTWQFRSFHREDPLFYKCYVCTRSWWLLSDFRNHLSSEHPDDDMIKIVLEKYETHEANLIAYHDRLVVINDIFTEGFCHRCGKNYANHELGERFQQKFYKNDGCTKQFFTCMGLRDHMKSCPICKPDEKAFQCDICKSRYDTEDILNNHLVLSHSVRSDIPIMTHYNTCMKCSERYSCRYLHKCWRKDPHCECPHCFRNFSNNMSLELHMKHSGPYECAICDLKMSFSCMKYDHMLSHTDKYMTVRKCDKCKGLNVFLDNEDAAAHFKLMHEAEDKQQQIVYPKLIVPSSCVYQSLEQPELTDQESFEERELTSKEQEWPTKYDHELNGYNKSSSEFLMDGVMVKEEPDDFENGEFGEGSNLLIKEEPLEETESEENETDNFDHQISVKEELIEEEYDGDIIKLNFNIEDLLVKQESFTNDDGEEYSQDTIQSQTEDDDSQGLPLPIKEEMDTVLEPVCSIQGDKTKKENLYRCTKCGFTATHKQYKAHVEYDCKNQINHRDYYCSKCANTFNSMKKYLGHFELHGYKNKACPECLVQFQNYTLLGTHIQTHIKQNFVRVKMITHAGKAMTKPDFQCKKCSETTSIKDFFEHWELHINANPTHPIKVTSRPPQKRVERHEIIMKECIARLHKMPKECNHCHRWFKRVNECKRHIIEHLLADAYNHKHIYNELKCQICETGFAVPEKYKQHMRDHASLPVYKCEICDRTFSDSSNFTKHKKVHNLRVIICDLCGKKFQSKVSLGKHIEVRCSHCIFETLRFVKNSFVAEADFEADDGPTWMFKSFRVDAPNVGGQFGQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085878;
- 90% Identity
- iTF_01085878;
- 80% Identity
- -