Oleu025520.1
Basic Information
- Insect
- Ochropleura leucogaster
- Gene Symbol
- -
- Assembly
- GCA_958449745.1
- Location
- OY288228.1:6166913-6173488[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.18 15 7.0 0.6 1 23 25 47 25 47 0.95 2 22 0.019 1.6 10.1 0.2 2 23 119 141 118 141 0.93 3 22 0.012 0.99 10.7 4.0 1 23 146 169 146 169 0.95 4 22 0.0084 0.67 11.2 1.1 1 23 174 197 174 197 0.96 5 22 0.12 9.9 7.6 0.2 2 23 200 222 199 222 0.93 6 22 0.21 17 6.8 1.2 2 22 229 249 228 249 0.93 7 22 0.035 2.8 9.3 0.5 1 23 310 333 310 333 0.89 8 22 0.0038 0.3 12.3 2.4 1 23 378 400 378 400 0.96 9 22 0.068 5.4 8.4 0.1 3 23 429 450 429 450 0.96 10 22 0.0053 0.42 11.9 1.8 1 23 470 493 470 493 0.96 11 22 3.2e-05 0.0025 18.9 0.5 1 23 498 521 498 521 0.96 12 22 0.0012 0.094 13.9 0.8 1 23 526 549 526 549 0.96 13 22 0.00075 0.06 14.5 1.2 3 23 553 574 552 574 0.96 14 22 0.0096 0.77 11.1 1.3 2 21 582 601 581 602 0.94 15 22 0.0032 0.26 12.5 1.7 1 23 656 679 656 679 0.94 16 22 0.73 59 5.1 0.0 2 23 752 775 751 775 0.94 17 22 1.5e-05 0.0012 19.9 0.1 3 23 782 803 781 803 0.94 18 22 0.0027 0.21 12.8 2.8 2 23 808 830 807 830 0.94 19 22 0.0084 0.67 11.2 5.1 1 23 835 858 835 858 0.96 20 22 1.8e-05 0.0015 19.6 5.0 1 23 862 885 862 885 0.97 21 22 0.00021 0.017 16.2 0.3 2 23 892 913 891 913 0.96 22 22 7.6e-06 0.00061 20.8 0.6 1 23 919 941 919 941 0.98
Sequence Information
- Coding Sequence
- ATGAGAAGACGACGGAATCTCCAAATTATATTCAACAACACTTCAATTATTCCTTTTAAATGGCGCGGGAAGTATCTCTGTTTCTATTGCAGCAAAGACGTAGCCGAGTATACAGAGTTAAGGAATCATACCAAAGCGCATGGCAACTGTTCAATTAAAGACCATTccttaaaagttttaaaaggaGGAAAGAATATGGAAATCAAAGTAGACATATCTTGTATTTCTTGCGAAGTTTGTGAAGAAATTTTACCGTCATTCGATGAAATCATTGCTCATTTGTTTGATAAACATGCTCTCGAATACGATAAAGGAGTAGAAATGGCTATAGAAGAATATAAGCTTGCTAGCCTCAGTTGTACCGCATGTGATGAAAGTTTTACATACTTCGGCTATCTAGTGTCTCATGTCAATAATAACCACCCGAAAAACTGTCACATATGCGAGAACTGCAATCAAAAATTCAACAAAAGAAGAGATTTGTTCTCTCATGTGAAAAACTACCATCGAGAAGGAGGCTACAAATGCGAAATGTGCCCACAAGTCTTCAACTCAATGAATATTTTGAGAAAACACAGAAATAACAGACATTTGACTCGATGTAATATATGCAATTTAAAACTACCGTCAGCTTCTATGAGACAAAAACATATCGATTTAGAACACCCGGATGATGGGTCTCTGCAGTGCGATGCCTGCTTCAAAGATTTCCATACGAAAAGAGGCCTCAAGATGCATGCTAGAAAATGTAAAGGAGAAGAGATTTTCGGAATCGCGATCAAAGAAGAAAACTCGGCCATGGATTTAGATTTAGACCAAAATTACGATGATCCGGTCAAAAGACCTTGCGTCAGACAACTTCGGGAAAATATAGTCACAATCATAAATATGTCCACTGCAATACCTTTTAACTTTTATAAGAATAAGTTCAACTGCTTTTACTGCTCCAAAGATTTTGGCGATTCAGATTTGATGAGGGAACATACAGTTTTAGAACACCCCGTTTGTGATGTCAACGAGAAATatGGTCTACCAGGGCCGTACGAAGGCTGTACCTCTGAGAGACGACGGAAAAACTTGAAAATACTGTTCAACCACTCGACCATCATGCCTTTTAAATGGCGAGGAAAATACCTTTGCTTCTACTGCGGAAAAAACTATACAGAATACATAGAATTCAGAAAGCATACAAAATCCCACGGGCTATGCACCACTAAAGATTATTCCCTCAAATTAATCAAAGGAAACAACGTCGAAATTAAAATCGATGTCTCAGAAATTGGTTGTGACATCTGCAATGAACCGTTCAACAGATTCGAAGAAATAATCGATCATTTGATCTCGAAACACAATTtagaatacaataaaaacatcGATATACCCTTCCAAGAATATCGACTTGTCGACTATCGATGTTTACACTGCGAAGAACAGTTTTCTTATTTCGGTTATTTGGTCAAACATGTTAACAATGTACACCCGCAGAATTGTTTCATTTGCGATGATTGTGGAGTTACTTTCAACAAGAAGAGAGATTTGTCTATACATTTAAGGAATTATCACAGACAGGGAGGTTACCCTTGTGATTTATGTCTAAAGAACTTTGAAACACGTCTTATGTTACGGAGGCATCAAAACAATATGCATTTTAGACACTGCAAGAGTTGTGGTTTGCGATTTGCGTCCCTTTCTATGCTACAAAAACATGTTCAAGTAGATCATCCACAAAATGAGAGCAATATGAAGTGCAGTTACTGCTCCAAAGAGTTCCATACTTCTTTAGGCTTAAGACAGCATATAAGCAAATGCAAAGTGAAAATAATTTCTCAGATTGAACCACAAACTTCTTTCTTAAACGACAGTAACATAGAACCGAAGAAAAAGCAGAATATCTTACAAATAAGACAGAACATACAGTGCGTACTAAATATGTCAACTGCAGTGCCTTTCAAATTCTTCTCCAAATATTCCTGTTTTTATTGCTCAAAGAAGTTCGTAGAATTTGATGAATTACGCCAACATACCAGTCTTGAACATCCTGTATGCGATTTGAAGTCGAAATGCATGAAGAAATGTAAAGGAGAAAGGATTGCCGTCAAAATCGATATATCTACATTAGCTTGTAAATTATGTTGCTTACCTATGCCTAACTTGGAAGATTTGATCAACCATTTAATAGCTGAACATAAAGCGAATTACGATACGTCTATTTCTGGATGTTTAGAACCTTTTAGGGTTATTAAGGACAATATGCCGTGTCCTATATGCCCCGATACTGTATTCAGATACTTCGGGATTTTGCTCCGTCATATGAATTCCGAACACAGCAACAATAATCGAATATGCGATTTCTGCGGTCGAAGTTTCAGAAATGCAGCAAATTTAAATGTGCACATAACCTACGCACATACTGGTTCATGCGAATGTGATATCTGTGGAGTTAAATATAAGAACCAATGGTGTCTGGCACGTCACAGAGCGAGAACTCACGATGCGAAAGACCATAAATGTCCAAAATGCCCCGAGCAGTTCCAATCACAGtatcataaacaaaaacatttaatcaaAATGCACAATGTAGGACATAAATGTAGTTATTGCGGCAAAATGTTTACTAGAAACTCTTTCATGAAAGACCATGTTAGGAGAACACATTTGAAAGAGAAAAACATTCCCTGCTCAATATGTAATGAGAAATTTTTCGATAACTATCTTCTGAGGATGCATATGGTTAAACATGAGGGGGATAGGAAATTCAGTTGTACAGTTTGTGGGAAGGCCTTTTTGAGGCGAAGCAATTTGAGCTCGCATATGGAGATGCATAAGAAGTATGGGCATGTGCAGTTGTAG
- Protein Sequence
- MRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDVAEYTELRNHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCEEILPSFDEIIAHLFDKHALEYDKGVEMAIEEYKLASLSCTACDESFTYFGYLVSHVNNNHPKNCHICENCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKDFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDLDLDQNYDDPVKRPCVRQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDLMREHTVLEHPVCDVNEKYGLPGPYEGCTSERRRKNLKILFNHSTIMPFKWRGKYLCFYCGKNYTEYIEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDYRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSIHLRNYHRQGGYPCDLCLKNFETRLMLRRHQNNMHFRHCKSCGLRFASLSMLQKHVQVDHPQNESNMKCSYCSKEFHTSLGLRQHISKCKVKIISQIEPQTSFLNDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRQHTSLEHPVCDLKSKCMKKCKGERIAVKIDISTLACKLCCLPMPNLEDLINHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042858;
- 90% Identity
- iTF_00042858;
- 80% Identity
- -