Aput015236.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020000744.1:169473-176201[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.1 2.1e+02 3.0 0.6 1 23 25 47 25 47 0.93 2 22 0.005 0.33 11.8 0.3 2 23 119 141 118 141 0.95 3 22 0.023 1.6 9.6 3.9 1 23 146 169 146 169 0.95 4 22 0.0033 0.22 12.3 1.0 1 23 174 197 174 197 0.96 5 22 0.11 7.4 7.5 0.2 2 23 200 222 199 222 0.93 6 22 0.067 4.5 8.2 1.2 2 22 229 249 228 249 0.94 7 22 0.21 14 6.6 0.4 1 22 310 331 310 333 0.87 8 22 0.0083 0.55 11.1 2.8 1 23 398 420 398 420 0.96 9 22 0.06 4 8.3 0.1 3 23 449 470 449 470 0.96 10 22 0.0067 0.44 11.4 1.9 1 23 490 513 490 513 0.96 11 22 2.4e-05 0.0016 19.0 0.5 1 23 518 541 518 541 0.96 12 22 0.001 0.068 13.9 0.8 1 23 546 569 546 569 0.96 13 22 0.00065 0.043 14.5 1.6 3 23 573 594 570 594 0.91 14 22 0.03 2 9.3 1.5 2 21 602 621 601 622 0.94 15 22 0.0049 0.33 11.8 2.5 1 23 676 699 676 699 0.93 16 22 0.65 44 5.1 0.0 2 23 772 795 771 795 0.94 17 22 1.3e-05 0.00089 19.8 0.1 3 23 802 823 801 823 0.94 18 22 0.0024 0.16 12.8 2.8 2 23 828 850 827 850 0.94 19 22 0.0075 0.5 11.2 5.1 1 23 855 878 855 878 0.96 20 22 1.6e-05 0.0011 19.6 5.0 1 23 882 905 882 905 0.97 21 22 0.00019 0.013 16.2 0.3 2 23 912 933 911 933 0.96 22 22 6.8e-06 0.00045 20.8 0.6 1 23 939 961 939 961 0.98
Sequence Information
- Coding Sequence
- ATGAAAAGACGACGGAACCTCCAAATAATATTCAACCACACGTCCATAATACCTTTTAAGTGGCGCGGGAAGTACCTGTGTTTCTATTGCAGCAAAGATATGGCAGAATATACAGAGTTAAGAGACCACACTAAAGCGCATGGGAACTGTTCCATAAAAGACCATTCGCTGAAAGTCTTAAAAGGAGGGAAAAACATGGAAATCAAAGTAGATATATCTTCCATTTCTTGTGAAGTTTGTGCAGAAACTTTGCCATCTTTCGATGGAATTATCGCACATTTATTTGAGAAACATTCTCTTGTATACGATAAAGGAGTAGAAATGGCTATTGAGGAGTATAAACTGGCTAGTCTTAGCTGTACAGCGTGCGATGAAACATTCACGTACTTCGGTTACTTAGTTTCACACGTAAATACAAATCACCCCAAAAATTGCCACGTTTGCGAGAGTTGCAATCAAAAATTCAATAAACGCCGTGATTTATTTTCTCATGTCAAAAACTATCATCGTGAGGGGGGGTACAAATGCGAAATGTGTCCTCAAGTCTTCAGCTCAATGAATATTTTGAGAAAACACCGAAATAATAGGCATTTGACTCGATGTAATATTTGCAATTTAAAACTACCCTCAGCTTCTATGAGACAGAAGCATATAGATTTAGAACATCCGGACGATGGGTCCTTACAATGCGATGCTTGCTTCAAAGAGTTCCACACGAAACGAGGCCTCAAAATGCATGTGAGGAAATGCAAAGGCGAAGAGATTTTCGGAATCGCGATCAAAGAAGAAAACTCAGTCATGGATTTGGACTTAGATCAGAACTATGAAGAACCGGTTAAAAAACCGTGCGTTAAACAACTCCGGGAAAATATTGTCACAATAATTAACATGTCTACTGCAATACCTTTTAATTTTTATAAGAATAAGTTCAACTGCTTCTACTGCTCCAAAGATTTCGGCGATTCAGACGTCATGAGGGAACACACGGTCTTAGAACACCCGGTATGCGATGTTAACGAAAAATGCATCAGGAAGTGTCGGGAATCGATATCCTGCGTCAAAATCGACATTTCCTCACTCGCATATGGTCTACCAGGGCCGTATGAAGGCTGTACCTCTGAGAGACGGCGGAAAAACTTGAAAATACTGTTCAACCACACCACAATCATGCCTTTTAAATGGCGAGGCAAATATCTTTGTTTCTACTGCGGACAAAACTATACAGAATACACAGAATTTAGAAAACATACTAAATCCCACGGACTATGCACTACTAAAGATTACTCCCTTAAATTGATCAAAGGGAACAACGTCGAGATAAAAATCGATGTGTCCGAGATCGGTTGTGACATCTGCAATGAACCTTTCAATAGATTCGAAGAAATAATCGATCATTTGATCTCAAAACATAACTTGGAGTACAACAAAAACATCGATATACCTTTCCAAGAATATCGTTTAGTCGATTTTCGTTGTTTGCATTGTGAAGAACAGTTTTCTTACTTTGGTTACTTAGTTAAGCATGTGAATAATGTGCATCCGCAGAATTGTTTTATCTGCGACGATTGTGGAGTAACCTTTAACAAGAAGAGGGATTTATCTGTACATTTGAGGAATTACCACAAACAGGGAGGATATCCTTGCGAGTTGTGCCTAAAAAACTTTGAAACTCGCCTAATGTTGAGGAGACATCAGAACAACATGCATTTCAGATGCTGCAAGAGCTGTGGTTTGCGTTTCGCCTCCCTTTCTCTCTTACAAAAGCACGTACAAGTTGATCATCTACAAAATGAAAGCAATATGAAGTGTAATTTCTGCTCTAAGGAGTTCCATACGTCTTTAGGCTTACGGCAGCATATAAGCAAATGCAAAGTGAAAATAATTTCACAGGTCGAACCACAAACATCGTTCCTTGACGACAGTAACATAGAACCTAAGAAAAAACAGAATATCTTACAAATAAGACAAAACATACAATGTGTATTAAATATGTCAACAGCGGTGCCTTTCAAATTCTTCTCCAAATACTCCTGCTTTTATTGTTCAAAGAAATTCGTAGAATTTGATGAGTTACGCCACCATACCGCTCTTGAACACCCTGTGTGCGATTTGAAGTCCAAAAGCATGAAGAAATGTAAAGGAGAAAGGATAACCGTTAAAATCGACATTTCTGCATTAGCTTGTAAACTATGTTGCCTTGCTATGCCTAGCTTAGAAGATTTGATCAACCATTTGATAGCAGAACATAAAGCAAATTACGATACGTCAATTTCTGGATGTTTAGAACCATTCCGGGTAATAAAAGACAACATGCCTTGTCCCATATGCCCTGATACAGTCTTCCGATACTTCGGTATTCTTCTTCGTCATATGAACTCGGAACATAGCAACAACAACCGAATTTGTGACTTTTGTGGTCGAAGCTTCCGTAACGCGGCAAATCTAAACGTGCATATAACTTATGCACATACAGGTTCATGCGAATGTGACATTTGTGGAGTTAAATATAAGAACCAATGGTGTTTGGCACGGCACAGAGCGAGGACCCACGATGCGAAAGACCATAAATGTCCGAAATGCCCCGAGCAGTTCCAGTCACAGTACCACAAGCAAAAACATCTAATAAAAATGCATAATGTAGGACATAAGTGTAGTTACTGTGGTAAAATGTTCACCAGAAACTCGTTTATGAAAGACCATGTTAGAAGAACGCATTTGAAAGAGAAGAACATACCTTGCTCGATTTGTAATGAGAAGTTTTTTGATAATTATCTTTTAAGGATGCATATGGTGAAACATGAGGGAGATAGAAAATTCAGTTGCACAGTTTGTGGAAAAGCGTTTTTAAGACGAAGTAACTTGAGCTCGCATATGGAGATGCATAAGAAATATGGCCATGTGCAGTTGTAG
- Protein Sequence
- MKRRRNLQIIFNHTSIIPFKWRGKYLCFYCSKDMAEYTELRDHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISSISCEVCAETLPSFDGIIAHLFEKHSLVYDKGVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNTNHPKNCHVCESCNQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFSSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHVRKCKGEEIFGIAIKEENSVMDLDLDQNYEEPVKKPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDVMREHTVLEHPVCDVNEKCIRKCRESISCVKIDISSLAYGLPGPYEGCTSERRRKNLKILFNHTTIMPFKWRGKYLCFYCGQNYTEYTEFRKHTKSHGLCTTKDYSLKLIKGNNVEIKIDVSEIGCDICNEPFNRFEEIIDHLISKHNLEYNKNIDIPFQEYRLVDFRCLHCEEQFSYFGYLVKHVNNVHPQNCFICDDCGVTFNKKRDLSVHLRNYHKQGGYPCELCLKNFETRLMLRRHQNNMHFRCCKSCGLRFASLSLLQKHVQVDHLQNESNMKCNFCSKEFHTSLGLRQHISKCKVKIISQVEPQTSFLDDSNIEPKKKQNILQIRQNIQCVLNMSTAVPFKFFSKYSCFYCSKKFVEFDELRHHTALEHPVCDLKSKSMKKCKGERITVKIDISALACKLCCLAMPSLEDLINHLIAEHKANYDTSISGCLEPFRVIKDNMPCPICPDTVFRYFGILLRHMNSEHSNNNRICDFCGRSFRNAANLNVHITYAHTGSCECDICGVKYKNQWCLARHRARTHDAKDHKCPKCPEQFQSQYHKQKHLIKMHNVGHKCSYCGKMFTRNSFMKDHVRRTHLKEKNIPCSICNEKFFDNYLLRMHMVKHEGDRKFSCTVCGKAFLRRSNLSSHMEMHKKYGHVQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01084474;
- 90% Identity
- iTF_01084474;
- 80% Identity
- -