Odup013363.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592703.1:9899507-9908405[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.32 24 6.2 0.0 3 23 112 132 110 132 0.96 2 19 0.019 1.4 10.1 0.3 2 23 136 158 135 158 0.95 3 19 5.8 4.3e+02 2.3 3.5 3 23 163 184 161 184 0.91 4 19 1.1 80 4.6 2.8 2 23 392 414 391 414 0.95 5 19 0.83 61 4.9 0.4 1 20 422 441 422 443 0.93 6 19 0.024 1.8 9.8 0.9 3 23 454 474 453 474 0.96 7 19 4.7 3.5e+02 2.6 1.0 1 23 490 513 490 513 0.88 8 19 0.023 1.7 9.9 2.4 1 23 522 545 522 546 0.94 9 19 0.044 3.2 9.0 0.4 2 23 623 645 622 645 0.90 10 19 2.4 1.8e+02 3.5 2.6 1 23 650 673 650 673 0.95 11 19 5.3e-05 0.0039 18.2 1.9 1 23 679 701 679 701 0.96 12 19 4.9e-05 0.0036 18.3 2.9 1 23 708 730 708 730 0.98 13 19 9.6e-05 0.007 17.3 3.1 1 23 735 757 735 757 0.97 14 19 0.0011 0.082 14.0 2.2 1 23 763 785 763 785 0.97 15 19 3.5e-05 0.0026 18.7 1.1 1 23 791 813 791 813 0.94 16 19 0.00024 0.018 16.1 3.5 2 23 820 841 820 841 0.98 17 19 0.0001 0.0073 17.3 0.6 2 23 849 871 848 871 0.97 18 19 0.0023 0.17 13.0 0.7 1 23 876 898 876 898 0.95 19 19 0.00011 0.0079 17.2 1.3 1 23 904 927 904 927 0.98
Sequence Information
- Coding Sequence
- ATGTCTTCTGATGATTCCGATGATGAACCATTATCCGTTATAGCGGCTTCCAAAAAGATCCAGCCAGGGGCAATTATAGAAAATGAAAccgaaaatgaaaatgttaaaataattaagaaaagaaagaaaaaggtTCCTCCGGTTATAATGAAGTTGCCCAGGAGGGTTAGAAAGGTTCTAAGTCCACCAATAATCGAGAGACCTGCCGATGTATGGCTCTATCTAAAAGATCTGAAGCAAACTGGCCCATATAACTGCTTACTATGCCCGGAATGGTTTATAAATAAAGCTAAAATTATCATTCACTATGTTTTGAATCACAAGAAAGATTTTTGTGGGATTTGCAGATACTTTGTCCCTGACAGAGAAGCCTGGTGGGCCCACATGAAGTTCCACACGCCATGGCCATGCTCACAGTGTGTAGAAAACTTTGATACAGAAACGGCCTTGCGTCATCATCTCAGTTCCATCCATAATTTAGTGCACTGCCGTCTCTGTCACTTCCGTGTTCCAGACAATGACCAATACAACACGCACCTCTTCCAAAAACACAATGTTACAAATGTTTCAAGTAAAGATGAAGAAATATTATGGGAACAAGATTACGATGGCAGTCCTAAATTCCTCTGTTTACTCTGTTCCAAATCTAACAATTTGTCTCGTACATTCTTCAATCACTACATGGGATACCACCATTTCACACTCAAATGTTTTTCCAGAATTATCTGTGGGAGAGATCCTCCATTTACAGTTATTGGTGCCGATGTAAGCACAGAGTTTGTTGATGGTTTAAAAGAACGACCACGGTTTGGATATGTGGGCTCAGATCAAAAGCAGGCTGATGGTGATCAAGAGTCGGATCACAGTATAAATCATGAAACAAACACATTCATTGATGTTCTTGTACCTGAGGTAAAGCAGGAAAGTGGTAGTGATCCAGAAGAACCAAAACAAGATGACACAAGTAAAGTTGATGAAACCGATGAAACGGATGTTACAAAAACTTATATAGGTGATGAAGATTTTGACGTAACACTAATGGAACTGATCCTAATGGAGTTGTGCTATTTCGATTACATAAGTCAGACTCTAACATATATCAACTCAAAAGAAGTTCCTCAAATCTCTGATATTAATTATGAGAGTGTTAATTCTGATTTGAATGTTGATTTGCATTGTTCTTTGTGTCAAACAAAGTACGAGACAATGCAAACGTTTTCTGTGCACATGACTAAATTGCACTGTGTGAAGTCAATGCCAATGTTCTCGTGTAGGGTTTGTACTACTTTATTTGACAGTCAACAAGAACTTGATACACACAAGCTTCAAGAGTTAAAAGAATTTGACGACTTATGGCTATGCCAGTTTTGTGACAAAGAGTTTGATAATAGAGAAGCAACGAGAAAGCATTTAACGGAACACATTGATGAAATGGAGTTTGACAATTGCTTCAGTCCCCATTTAGGGTTCAAATGTAAATTTTGCCCGACTTTATTCTGGAATGAAACGGACAGGCAGACTCATCAAGTTAGGGTCCACTTTAGCAAACACAAGGAccagtattataaatgcgagagCTGTGATGAAATTTACAGTGATAAGGTTTGGTACATTCATCATTACCTAGAGAAACATCATGATGAAAATGACAAGATTCCTCTATATCTTCTCAAGTGCTGTCTATGCTGCTTGGTGATGGAAACAGTAGATGAAATGAGGGATCACTTCAATAGTAAGCACCCTGAAGCCCGGAAGGTTTTCTGTTCTCTGGATAGTTGCAAATACAAACCGCTAAGCCATCGGAAATCATTCAAGATGCATTTGAGATTGATCCACAATCCATCAACACGCTCGGAACGTTCGGTATCGTGCACAGTTTGCGGGCGCGAATTCACAAGTTTACGGGCGTGTAGTGCGCACATGGCCCAAGTGCATGTACCGGGCAAGTTTAAGTGCAAGCTGTGTAGGGAGACATTGCATACATTAGATGAGAGAAAACTCCACTATTTAATCCAACACCCAGGCCGTCATCCGTTCGAGTGCACCGAATGTGGAAAATCATTCCAATATAAGTCATCATTGTACATGCACAAACAAGACCATGCGCCTAATAAACAGAACTACACATGCAGCTTTTGTTCGAAGGTGTTTAAGAAAAAGGACTCGTTCCGCGAGCACCTGCAAATCCACGAAGGGCCCCGACACTCGTGCTCGTACTGCCCGATGCGGTTCGTTCAGCGCTCGAACATGTTGCGTCACGAGCGACGTCACACCGGCGAGCGCCCCTACGCCTGCCCGCATTGCCCCCGGACATTCGCCGATAAGGGGGCGTGCACGTCGCATTCTAGGACTCACTCAAAGGAAACTTCTTACGCTTGCATATACTGCGGTCAGACATTCGTACAGAAATCGAAGTTGACTTATCACATTCGAAAACATACTGGAGAGAatttagaAACATGTACGATATGTTCAAAGTTGTTCACCAGCGCTTGTTCTCTACGTGAACATATGAAGACTCACAATGATAAGAAACAAATTGTCAAATGTCCTGTGTGCGACAAGAAGTACAGCGATGACCGCTACATGCTGCGGCACCTGCGCACGTCGCACACGGCTCGCCACCACGCGTGCCCGCTGTGCCGCAAGTCGCTGTCCAGTGCAGCCGGCCTGCGACACCACGTGGTCACACACTCCCTCAGAGACACCTTCCGATGCAAAATATGTCCTAAAACATATGCTGACAAAAGGACAATTGTTAAGCATGTGAGGCGTCGTCACGATCTCAACGGCACAGATGTTACTATAAAGGATTTCTACACTCGATTAGACCCTCGGGAATGTGATCTTGGGCTTACTGAAGATGTCATGACAACCATTTTTGGTCCACCAAAGAAAACCGCCAATGATGTCCTGGTAGGCGACTTCGTTACGTTTACTAAAGAGATTAAAGTCcctgaaaacaaaaaagaaccgaaaaagaaacaaacaactGAAGAGGTTTCCAAAGAGAGTGAAGAGAGTGGCACACATGAGGTCTTGACAATATGCATAAAACAGGAACGTAAATATGatgaaaataatgaagaaattgAGCCTACGGATTTTGTCAGCGTTAAAATTGAGCCTGCAGACGATGATGAAATGGATTGA
- Protein Sequence
- MSSDDSDDEPLSVIAASKKIQPGAIIENETENENVKIIKKRKKKVPPVIMKLPRRVRKVLSPPIIERPADVWLYLKDLKQTGPYNCLLCPEWFINKAKIIIHYVLNHKKDFCGICRYFVPDREAWWAHMKFHTPWPCSQCVENFDTETALRHHLSSIHNLVHCRLCHFRVPDNDQYNTHLFQKHNVTNVSSKDEEILWEQDYDGSPKFLCLLCSKSNNLSRTFFNHYMGYHHFTLKCFSRIICGRDPPFTVIGADVSTEFVDGLKERPRFGYVGSDQKQADGDQESDHSINHETNTFIDVLVPEVKQESGSDPEEPKQDDTSKVDETDETDVTKTYIGDEDFDVTLMELILMELCYFDYISQTLTYINSKEVPQISDINYESVNSDLNVDLHCSLCQTKYETMQTFSVHMTKLHCVKSMPMFSCRVCTTLFDSQQELDTHKLQELKEFDDLWLCQFCDKEFDNREATRKHLTEHIDEMEFDNCFSPHLGFKCKFCPTLFWNETDRQTHQVRVHFSKHKDQYYKCESCDEIYSDKVWYIHHYLEKHHDENDKIPLYLLKCCLCCLVMETVDEMRDHFNSKHPEARKVFCSLDSCKYKPLSHRKSFKMHLRLIHNPSTRSERSVSCTVCGREFTSLRACSAHMAQVHVPGKFKCKLCRETLHTLDERKLHYLIQHPGRHPFECTECGKSFQYKSSLYMHKQDHAPNKQNYTCSFCSKVFKKKDSFREHLQIHEGPRHSCSYCPMRFVQRSNMLRHERRHTGERPYACPHCPRTFADKGACTSHSRTHSKETSYACIYCGQTFVQKSKLTYHIRKHTGENLETCTICSKLFTSACSLREHMKTHNDKKQIVKCPVCDKKYSDDRYMLRHLRTSHTARHHACPLCRKSLSSAAGLRHHVVTHSLRDTFRCKICPKTYADKRTIVKHVRRRHDLNGTDVTIKDFYTRLDPRECDLGLTEDVMTTIFGPPKKTANDVLVGDFVTFTKEIKVPENKKEPKKKQTTEEVSKESEESGTHEVLTICIKQERKYDENNEEIEPTDFVSVKIEPADDDEMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761987;
- 90% Identity
- -
- 80% Identity
- -