Basic Information

Insect: Ochropacha duplaris
Gene Symbol: -
Assembly: GCA_951361185.1
Location: OX592716.1:2122797-2125811[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0016 0.12 13.5 4.8 1 23 150 173 150 173 0.97

2 16 0.00019 0.014 16.4 1.1 1 23 182 205 182 205 0.96

3 16 0.02 1.5 10.0 2.4 2 23 218 240 217 240 0.97

4 16 0.00062 0.045 14.8 1.1 1 23 249 272 249 272 0.97

5 16 0.00022 0.016 16.2 1.5 1 23 284 307 284 307 0.96

6 16 0.00015 0.011 16.8 0.7 2 23 339 361 338 361 0.97

7 16 0.0014 0.1 13.6 1.2 2 23 371 393 370 393 0.96

8 16 0.082 6 8.1 1.2 3 19 399 415 397 418 0.92

9 16 4.8e-05 0.0035 18.3 0.1 2 23 423 445 422 445 0.96

10 16 0.015 1.1 10.4 1.2 3 23 455 476 454 476 0.96

11 16 3.4e-05 0.0025 18.8 3.8 1 23 481 504 481 504 0.93

12 16 2.1e-05 0.0015 19.4 1.5 2 23 516 538 515 538 0.97

13 16 0.021 1.5 10.0 1.3 1 23 562 585 562 585 0.94

14 16 0.0005 0.036 15.1 1.9 2 23 619 640 618 640 0.97

15 16 0.014 1 10.6 0.2 1 23 706 728 706 728 0.97

16 16 0.09 6.6 8.0 2.0 1 23 734 757 734 757 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0016	0.12	13.5	4.8	1	23	150	173	150	173	0.97
2	16	0.00019	0.014	16.4	1.1	1	23	182	205	182	205	0.96
3	16	0.02	1.5	10.0	2.4	2	23	218	240	217	240	0.97
4	16	0.00062	0.045	14.8	1.1	1	23	249	272	249	272	0.97
5	16	0.00022	0.016	16.2	1.5	1	23	284	307	284	307	0.96
6	16	0.00015	0.011	16.8	0.7	2	23	339	361	338	361	0.97
7	16	0.0014	0.1	13.6	1.2	2	23	371	393	370	393	0.96
8	16	0.082	6	8.1	1.2	3	19	399	415	397	418	0.92
9	16	4.8e-05	0.0035	18.3	0.1	2	23	423	445	422	445	0.96
10	16	0.015	1.1	10.4	1.2	3	23	455	476	454	476	0.96
11	16	3.4e-05	0.0025	18.8	3.8	1	23	481	504	481	504	0.93
12	16	2.1e-05	0.0015	19.4	1.5	2	23	516	538	515	538	0.97
13	16	0.021	1.5	10.0	1.3	1	23	562	585	562	585	0.94
14	16	0.0005	0.036	15.1	1.9	2	23	619	640	618	640	0.97
15	16	0.014	1	10.6	0.2	1	23	706	728	706	728	0.97
16	16	0.09	6.6	8.0	2.0	1	23	734	757	734	757	0.97

Sequence Information

Coding Sequence: ATGTCTATAAATCAAGAGCAGAATTTACTTATTGAAAAGAGTGAAGATAAAAATGATAAGAAATCACGAAAGGATCCAACATCTTTCCTCCCAGATGAGCCAATGtcctatgaaataaaaaagaagaaaaagaaaaaaaagaaaaagcaaGTAGATCCATTCAAAGATGTAGAAGAGAAACAATTAGTCACTATTATTGAAAAGGCAGAATTTGATCCAGAAGTTAATATTAAAGTAGAAAATATAGAAGTTGAATTGGATTTTAATGATtttgcCGACAACACAGGTCTGATGGTAGAAGGACCTCATAGTGAAGACAGTCAAGAACCAGAAGTTAAAATAGAACAACAGAATCATGAAGCTATTTTGTTGACATTCGAGAGTGTTATCAACGAAAGATCTGTCCTAACTTACGGCCAAGCGGTGCCTGCCGAGGCCGCGCCCTCTCACGTTTGCAAAGTATGTCATCTAGTCTTTCAGTCACCGAAAACATTGCGGATGCACCAGAAAAGAAAACACAAGTCATTCAGACGGTATTTTACACACATATGCAATTACTGTGGAATgtcatatgaaatgaaaaatagtttAGCTGCTCATATTAAAAGGAAACATGGCCCAGATTCATTGCCTGATGATGGTGAGGAAAAAACTTGTGAAATCTGCGCTCTAGTTTTTAAAGGACATAATAGGTTACGTATGCATATGAGGAGAAAGCATGGCGCATATGAAGATTCCTTTACACATGTCTGTCAGGATTGTGGCCTCACCTACGACAAATATAGAAGTCTTATTGTACATATACAAAGAAAGCATACGGACCAAAAGAAACCAGAGTTGAGTCAATGGTTTAATTGTCCATTCTGCCCGAAGATTTTCACAAAAAGAGAGACTTATGTCAGACATGTTCAAAGGAAACATAGAATTACAGATGAGGAAAGTTTAATGAATGAAGAAGGAAAAGCTGCTCAAAAGCTCCTTGATAGTTACACTAATGAGCAAACCGGCGAGATAACCTGCAAAGAGTGTCCATTGGTGTTTTCATCTATTAATTTCTTAAAATTGCATATGAGAAGAAAACATAACGCATTGAAAGAAGATTTCAGATTGAAGTGTAGGATATGTAACTTATCATATGATAAAATTGAGAGTTTAAAACGACATGTGCGTAGAAAACACGATCAAGGCTCCCATTGCGAGGTCTGTAATAAACAATTTGATACAAGAGAAATGTATTTAAACCATTCTCATGTGCGAGTGATAAAAGAGTGCTCAATTTGTGGCTTGATCTTCGCCTCCCAAGGGGGCTTAGCAAAGCATATAAGGTATACGCACAAAATCGATACAGTCAAAACAGTTTTCTGCAGCATATGCAATGAAGGATTCCATGATAAGCGACAATTGAAACCGCACATTATGAAAGTGcatttaaaagtatcctataattgtagatattgcaataaagtatttaaaagaaaggaGACTTATAGAAGGCATATAATATTCAAACATCCAACAAATGGTCTCGTTACTGAAAACATGCAGAAATGCGAGCAGTGTCCAGAAACATTTAAAGATGAATTTGAACTGTGCCGTCATATAAATACAGTTCATGGTAAAAAAGGGGATTTATCGAAGCCCttaattgaaataaagaaagaagaagTTGATATAAAGGATACATTCCAGTGCTCAAAATGTACtgataatttcatgacatgggaGCAATTGAAGTTGCATTACGAACAAAACCACCAAACAATCGGAGAAACACAATGTCAAATATGCGGTGAACTTATCCCGGGCAACGAATTACAGAAGCACATTAAGAATTTACATACAGATACAACAATGCAGTGTAAATATTGTGAATTTAAGTCTACGACTAGAGCGAGTTTAACTCAGCATATGTTAAGGCACAAAAATGCAGCAACGTTGCATTGTGACTATGCAAATTGTAGATATAAGTCGTTTTACGAAGGGGCAATGGAAAAACATAAGCGGAAACATGCTGACCAGGGTGTTAAATTGCAGTGTACGCAATGTCCTTTCCAGtctatgaataaatatatattaaagtaTCATGAGGAAGCCCATGAGACGGGCAAGAAGCGTTATATGTGCAATCAATGTGATTATGCAACTATTTTGCCAGCGAACCTAGTTCAACATAAGTATAAGCATTCGACGGAAAAGCGGTTTAAATGTGATGTTTGTCCGTTTGCAACCAAGTACAATACGTCGTTGCGGTTTCATGTGAGGAAGAAACACTGTGATCTCCCTTCGTTCAGTTGa
Protein Sequence: MSINQEQNLLIEKSEDKNDKKSRKDPTSFLPDEPMSYEIKKKKKKKKKKQVDPFKDVEEKQLVTIIEKAEFDPEVNIKVENIEVELDFNDFADNTGLMVEGPHSEDSQEPEVKIEQQNHEAILLTFESVINERSVLTYGQAVPAEAAPSHVCKVCHLVFQSPKTLRMHQKRKHKSFRRYFTHICNYCGMSYEMKNSLAAHIKRKHGPDSLPDDGEEKTCEICALVFKGHNRLRMHMRRKHGAYEDSFTHVCQDCGLTYDKYRSLIVHIQRKHTDQKKPELSQWFNCPFCPKIFTKRETYVRHVQRKHRITDEESLMNEEGKAAQKLLDSYTNEQTGEITCKECPLVFSSINFLKLHMRRKHNALKEDFRLKCRICNLSYDKIESLKRHVRRKHDQGSHCEVCNKQFDTREMYLNHSHVRVIKECSICGLIFASQGGLAKHIRYTHKIDTVKTVFCSICNEGFHDKRQLKPHIMKVHLKVSYNCRYCNKVFKRKETYRRHIIFKHPTNGLVTENMQKCEQCPETFKDEFELCRHINTVHGKKGDLSKPLIEIKKEEVDIKDTFQCSKCTDNFMTWEQLKLHYEQNHQTIGETQCQICGELIPGNELQKHIKNLHTDTTMQCKYCEFKSTTRASLTQHMLRHKNAATLHCDYANCRYKSFYEGAMEKHKRKHADQGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCNQCDYATILPANLVQHKYKHSTEKRFKCDVCPFATKYNTSLRFHVRKKHCDLPSFS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01416141;
90% Identity: iTF_01416141;
80% Identity: -