Basic Information

Insect: Ochropacha duplaris
Gene Symbol: -
Assembly: GCA_951361185.1
Location: OX592705.1:9399720-9403649[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0016 0.11 13.5 2.1 1 23 134 156 134 156 0.98

2 13 0.00019 0.014 16.4 5.7 2 23 162 183 161 184 0.94

3 13 0.0033 0.24 12.5 0.4 2 23 186 207 185 207 0.95

4 13 4.7e-05 0.0034 18.3 2.0 1 23 222 244 222 244 0.99

5 13 8.3e-08 6.1e-06 27.0 0.7 1 23 253 275 253 275 0.97

6 13 1.4e-06 9.9e-05 23.2 1.9 1 23 280 302 280 302 0.98

7 13 8.4e-07 6.1e-05 23.8 0.1 3 23 310 330 309 330 0.98

8 13 1.9e-08 1.4e-06 29.0 0.9 1 23 336 358 336 358 0.96

9 13 6.1e-05 0.0045 18.0 1.5 1 23 364 386 364 386 0.96

10 13 1.8e-05 0.0013 19.6 0.8 1 23 392 414 392 414 0.97

11 13 0.0028 0.2 12.8 6.3 1 23 420 442 420 442 0.97

12 13 2.4e-05 0.0017 19.3 2.1 1 23 448 470 448 470 0.99

13 13 3.1e-05 0.0023 18.9 0.4 1 20 476 495 476 498 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0016	0.11	13.5	2.1	1	23	134	156	134	156	0.98
2	13	0.00019	0.014	16.4	5.7	2	23	162	183	161	184	0.94
3	13	0.0033	0.24	12.5	0.4	2	23	186	207	185	207	0.95
4	13	4.7e-05	0.0034	18.3	2.0	1	23	222	244	222	244	0.99
5	13	8.3e-08	6.1e-06	27.0	0.7	1	23	253	275	253	275	0.97
6	13	1.4e-06	9.9e-05	23.2	1.9	1	23	280	302	280	302	0.98
7	13	8.4e-07	6.1e-05	23.8	0.1	3	23	310	330	309	330	0.98
8	13	1.9e-08	1.4e-06	29.0	0.9	1	23	336	358	336	358	0.96
9	13	6.1e-05	0.0045	18.0	1.5	1	23	364	386	364	386	0.96
10	13	1.8e-05	0.0013	19.6	0.8	1	23	392	414	392	414	0.97
11	13	0.0028	0.2	12.8	6.3	1	23	420	442	420	442	0.97
12	13	2.4e-05	0.0017	19.3	2.1	1	23	448	470	448	470	0.99
13	13	3.1e-05	0.0023	18.9	0.4	1	20	476	495	476	498	0.94

Sequence Information

Coding Sequence: ATGAATGTTATTGACATTAATAACTCTTGTCGAACATGTATGAAGACCAATGTGAGCCTGTTGCACTTATTCGAGACAGTTAAAATTGAGGAGGATAATAGCCTTCAATTAGTAAATATGCTCATGGAATGTACCACAGCTCAGGTATCAAAAGATGATGGTCTACCTCAGAATCTCTGTAATGAATGTGTCAATTTACTACAAATTGTTTACACATTCCGCAATCAAACAGCAAAAGCACAGAATGAATTCAAGAGATTGCTGCAGTTGCAAACtgaattaaaagttaaaaaggAATTTGATGTTGAATTAAAAATTGAACATCAGTTTGATTATTTTGAACCCTATGAAGGTTTTAGTTTGAATGATGACTTGAAATCAGAGTCAGAAGAAAAAGTTTATGAATGTAGTAAATGTCAAAAACAGTACAGCCAAGAGAAAAAGTTTTTGAGCCATTTGGCTTCACACAATGTGCCTTCCCTGAATTGCTCCTATTGTAATAAGGCATTTCACAAACAATCATCTCTAGAGAAACACTTGACTAAACATCATAATAAGTGCATGGTATGTAATGAAAATTTTGACACGAAAAAACTTTTGAATGAACATGTTTCCGCACATAAAGAAGATGGGGTAAAGACTGAGTACAATGAAATGATCAAATACCAATGTTTGGAATGTGATATGTCTTTCCCAAAGCACAGATCACTAGCTATGCACATGAAAAAGCATAAAAATAAAGAGAACAATAAATCTTTTATATGTGATATCTGTGGGAAAGAGTTTTCTATGAAGAGTTTATTGAAACGGCATATGAAGCTTCACAGCGAGCATGCATatgtttgtatgaaatgtaACAAGCGTTACTCTAGACAGGACCAACTTATGGAGCATATGAACAAACATAATGGCCATAAACCTAATATTTGTCCTTATTGTAATAAAGGATTCTCACAACTAGGCAGCCTTAAGGATCACATCCGCGTCCACACTGGGGAAACCCCATATTTGTGCTCGGAGTGTGGCAAGGGCTTTAGTAACAGCTCCAACTTGCGGCAACACATGATGCGTCACTCCGGTGTCAAGCCTTATGCTTGCAACTTATGCCCTAAGACATTCTGTACTAAAGGTCAGATGACGTCACACGCGGTCACGCACACCGGCGCGCACCCGTACAAGTGCGAGCAGTGCGGCGCCGCCTTCACCAAACCTAACTCGCTCAAGAAACACAAGTTCATACATCTCGGCGTCAGGCCCTTCGCCTGCGACACTTGTTCTATGCGGTTCACGTGTAAGGACCACCTGAAGCGGCACCAGCGCATCCATACCGGCGAGAAACCGTACCGCTGTCGACTGTGCACGCGCGCCTTCACACAGAGCAACGACATGCTCAAACATCTACGCACGCATCTCGGACAGAACCTCTACCAGTGTTCAATATGTGGCACAAGTTTCCGACTACTAAGTGAACTAAAACAGCACTATCCTGTACACTTCACGAATGGCAACGAAAATGATCAAGCTGTGAAGACGTTTGAAGCAACCAAACCACCTGAAAACATCAAACTAGACGAGCCCAAGCAAGAAAAAGAAAACACCGAAGGAAGAATAACTATAACAATCAATAAATGTGATCAAAACGGCTTGGCTGGTGATATTACTATTAATATAGATCAAGGAGCTAGCTAG
Protein Sequence: MNVIDINNSCRTCMKTNVSLLHLFETVKIEEDNSLQLVNMLMECTTAQVSKDDGLPQNLCNECVNLLQIVYTFRNQTAKAQNEFKRLLQLQTELKVKKEFDVELKIEHQFDYFEPYEGFSLNDDLKSESEEKVYECSKCQKQYSQEKKFLSHLASHNVPSLNCSYCNKAFHKQSSLEKHLTKHHNKCMVCNENFDTKKLLNEHVSAHKEDGVKTEYNEMIKYQCLECDMSFPKHRSLAMHMKKHKNKENNKSFICDICGKEFSMKSLLKRHMKLHSEHAYVCMKCNKRYSRQDQLMEHMNKHNGHKPNICPYCNKGFSQLGSLKDHIRVHTGETPYLCSECGKGFSNSSNLRQHMMRHSGVKPYACNLCPKTFCTKGQMTSHAVTHTGAHPYKCEQCGAAFTKPNSLKKHKFIHLGVRPFACDTCSMRFTCKDHLKRHQRIHTGEKPYRCRLCTRAFTQSNDMLKHLRTHLGQNLYQCSICGTSFRLLSELKQHYPVHFTNGNENDQAVKTFEATKPPENIKLDEPKQEKENTEGRITITINKCDQNGLAGDITINIDQGAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417041;
90% Identity: -
80% Identity: -