Odup008700.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ochropacha duplaris
Gene Symbol
-
Assembly
GCA_951361185.1
Location
OX592698.1:4355198-4374155[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.1e-05 0.0066 17.4 2.2 1 23 432 454 432 454 0.97
2 20 0.0047 0.35 12.0 0.6 1 20 460 479 460 482 0.94
3 20 7.4e-06 0.00054 20.8 5.6 1 23 501 523 501 523 0.98
4 20 0.00011 0.0081 17.2 4.1 1 23 529 551 529 551 0.99
5 20 4.2e-05 0.0031 18.5 5.3 1 23 557 579 557 579 0.97
6 20 1.3e-05 0.00094 20.1 7.3 1 23 585 607 585 607 0.97
7 20 8.4e-07 6.2e-05 23.8 2.9 1 23 613 635 613 635 0.97
8 20 0.00012 0.0084 17.1 6.7 1 23 641 663 641 663 0.97
9 20 0.00011 0.0083 17.1 6.5 1 23 669 691 669 691 0.97
10 20 5.5e-07 4e-05 24.4 1.9 1 23 697 719 697 719 0.98
11 20 5.6e-05 0.0041 18.1 7.9 1 23 725 747 725 747 0.98
12 20 9.4e-06 0.00069 20.5 6.4 1 23 753 775 753 775 0.98
13 20 5.1e-06 0.00037 21.4 5.2 1 23 781 803 781 803 0.98
14 20 1.1e-05 0.00079 20.3 5.3 1 23 809 831 809 831 0.96
15 20 1.1e-05 0.00083 20.3 6.8 1 23 837 859 837 859 0.98
16 20 3.5e-06 0.00025 21.9 6.0 1 23 865 887 865 887 0.98
17 20 1.2e-05 0.00091 20.1 7.6 1 23 893 915 893 915 0.97
18 20 4.1e-06 0.0003 21.7 5.4 1 23 921 943 921 943 0.98
19 20 0.00062 0.045 14.8 0.3 1 23 950 972 950 972 0.96
20 20 0.72 53 5.1 5.2 1 23 981 1003 981 1003 0.98

Sequence Information

Coding Sequence
ATGAATCCGGAGCACCACAATATCAATACGGGTGGTGGCCAGCCTCCTGGAAGTTCTGAGTCGCAGAACCAGAGAGTGCAATCAGGCCAGCAACAGCAGAGTAATTTACCTCCCACAACCTCAGCTACGGACTTGCGAGTGAACTCTGCCGCTGTGAATGTCGCTTTGTCTAGCGTCGCCAAATATTGGGTGTTTACAAATTTATTCCCTGGACCCATACCTCAGGTTTCTGTTTACGGGTTGCCGACAGGTGCAAGAATTGAAAATGGAAAACCTGTACAGGATCTTGGTCAAGGACATGCAAGCATACTGAATGGTGATCCAAACATTATACTCGGACATCATGGGGGACAGCCTCAGGTCACTGTTTCAGCCGGAGGTCAGCAGATACCTGTCTCTCAAATCATTGCCACACAATCTGGACAGACACATGAAGGTCTGGTGGCGCACAATCAGCAGGAGGCCGGGCAGCAGTCGGcggcggcgcaggcgcaggtgTCGGTGAGCGCGGCCCAACCGCACACCCATCACCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCATGTGGGTCATCACTCACAACAGCATATTATGCAACAGCAGTTGATGGCAGCTGCTCGCCCTGAACATGGAAATCAACAGATTCAACTGACAGTAAGTGAGGATGGCATCGTCACAGTGGTCGAGCCGGGCGGCGGTGGCGGaagcagcggcggcggcgggaaGCTCGTTGACAAAGAAGATATGCACGACCCCATCAAGATGCCCTCAGACCACACACTTACTGTGCATCAATTGCAACAGATTGTGGGCCAGCAGGTAATCGACAGCGTAGTCCGCATAGAGCAAGCGACAGGCGAGCCAGCGAACATTCTAGTAACACACAACCCAGATGGCACTACTTCCATTGAAGCGAGCGCGGGCGACCCGCTCCTAGTTAAAGATGAgaaaaacgcgggtaaaatagAAACTGCTCAGTTTGCAATACCTGCTGATATAAAGGACATGAAGGGGATTGATTTGAAGAGTGTTGGAATGGGCATGGAAGGAGCAGTAGTTAAAATATCTGCCGGCACATCGGACCACGACCTTCATGCCATGTATAAAGTTAATGTGGAAGATCTCTCACAATTACTCGCTTATCATGAAGTTTTTGGGAAACTCAACACTGAAGGCCAACAACAGCAAGCTaagGTGATAGAAGTGGAAGTGGAAGCGCCAGGCACCAGTGCCGCTATGTCAGAATCAGAATCTTCGCCGGGCCATCACTCGTGTGATATTTGcggaaaaatatttcaattccGCTATCAACTTATTGTTCACAGACGTTACCACGGCGAGAGTAAACCTTTCACGTGTCAAGTTTGCGGCTCTGCGTTCGCCAATCCAGTTGAGCTGTCTAGACATGGAAAATGTCATCTTGCCGGTGATCCAGCGGAACGCCACGCCAAAAGGTTGGCGCAAGACAAACCCTACGCATGCACCACTTGCCACAAAACGTTCTCCCGTAAAGAACATTTGGACAACCATATCCGCAGTCACACTGGGGAAACCCCATACAGATGTGAATTCTGCGCCAAAACGTTCACGCGTAAAGAGCACATGGTGAACCACGTGCGGAAACACACCGGCGAGACGCCGCATCGCTGCGATATATGCAAGAAGAGCTTCACAAGAAAAGAACATTTCATGAACCATGTTATGTGGCACACTGGTGAAACACCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGGTCGCACACAAGTGATACTCCGTTCCGATGCGATCTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATATTATGGCATACGGGTGAAACTCCCCATCGCTGTGATTTCTGCTCCAAGACTTTCACACGCAAGGAACACTTACTGAACCACGTGCGTCAACACACGGGCGAATCTCCGCACCGCTGCAACTTCTGCTCCAAGTCATTCACTCGAAGAGAACATCTCGTGAACCACGTCCGCCAACACACTGGCGAGACGCCCTTCCAGTGTGGATACTGCCCTAAGGCGTTCACTAGGAAGGACCATCtcgTGAACCATGTCCGGCAACACACGGGTGAATCTCCTCACAAGTGCTCATTCTGCACTAAGTCTTTCACTCGCAAGGAGCACCTGACGAACCACGTGCGACAACACACGGGCGAGTCTCCGCACCGGTGTAGTTACTGCGCAAAGTCTTTCACAAGGAAGGAACATCTTACTAATCATATTAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTACTGCCCGCGCGCGTTCTCGCGCAAGGAGCACCTGAACAACCACGTGCGCCAACACACCGGCGCCGCGCCGCACGCCTGCACCTACTGCAACAAGACCTTCACCAGGAAGGAGCATCTCGTCAACCATGTCAGGCAACATACGGGCGAGACGCCATTCAAATGCACGTACTGCTCGAAATCATTCTCGCGGAAGGAACACCTCACGAATCACGTTCATATCCATACGGGAGAGACTCCTCACAAGTGTCCGTTCTGCACTAAAACATTCTCTCGGAAGGAGCATTTGACCAATCATGTCAGAATTCATACGGGTGAATCTCCACACCGTTGTGAATATTGCCAGAAGACGTTCACACGCAAGGAACACCTCACAAACCATCTGAAACAACACACTGGGGATACAGCACATACATGCAAAGTGTGCACTAAACCATTTACAAGGAAAGAGCATCTTGTGACTCACATGCGATCACATAGCTGCGGCGAGCGGCCATACAGTTGTGGTGAGTGTGGCAAGTCATTCCCGCTGAAAGGAAACTTGCTGTTCCACGAGCGATCACACAACAAAGGAAACGGCGCACGGCCCTACCGATGCGATATCTGCTCCAAGGACTTTTTGTGTAAAGGGCATTTAGTGTCACATAAACGCACGCATAACGATGCGGGCGAAGGTACCGCTAATGCGGAGACAACGGCCATGACGACAGAGGACTGCAATGATTGTACTAACAAGTGCATCAAAACTGAAGTGGAAAGACCAGAGAGAAAACATGATATCAGGGCCGCTGCCGAAAATAGGCCGACTGAAGTCAATGTCGCACAAGCCAATACACAACCCAATACAACTGTGATGCAAATTACTAGCCAACAAGTCCGTCCTGGCGCGGTGACGAGCGCGACTGGCATCACGACCGGGACGTTCACACACACCAACCCGCAGCATCACGCCGCACCCGGCGCCGCCGCAGCCGCCACCTCCCTTACACACCACCCCGTCACTGTCAACTACTAG
Protein Sequence
MNPEHHNINTGGGQPPGSSESQNQRVQSGQQQQSNLPPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQGHASILNGDPNIILGHHGGQPQVTVSAGGQQIPVSQIIATQSGQTHEGLVAHNQQEAGQQSAAAQAQVSVSAAQPHTHHQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMAAARPEHGNQQIQLTVSEDGIVTVVEPGGGGGSSGGGGKLVDKEDMHDPIKMPSDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDPLLVKDEKNAGKIETAQFAIPADIKDMKGIDLKSVGMGMEGAVVKISAGTSDHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQQQQAKVIEVEVEAPGTSAAMSESESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPAERHAKRLAQDKPYACTTCHKTFSRKEHLDNHIRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTSDTPFRCDLCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGAAPHACTYCNKTFTRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHIHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEYCQKTFTRKEHLTNHLKQHTGDTAHTCKVCTKPFTRKEHLVTHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKGNGARPYRCDICSKDFLCKGHLVSHKRTHNDAGEGTANAETTAMTTEDCNDCTNKCIKTEVERPERKHDIRAAAENRPTEVNVAQANTQPNTTVMQITSQQVRPGAVTSATGITTGTFTHTNPQHHAAPGAAAAATSLTHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00704247;
90% Identity
iTF_00761885;
80% Identity
-