Odup020289.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592712.1:8916802-8917650[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-11 1.4e-08 34.9 0.0 2 38 16 52 15 58 0.91
Sequence Information
- Coding Sequence
- atggTTAACAACTATAAAAGGAAGTCGGACAGGCAATCCTGGCGTGAGGAGGACATGAAAAATGCCATTGAAAAAGTAGCTACGCGCAAAATGGGGCTTAACAAAGCGGCCGCCACATTTAATGTTCCAAAGACTACATTAATAAGAAGACTTACCAAATATGAGAGCACCAAAGACTTAACTGTAGCTACGGAAAAGAAAATGGGCAGGTATGAAAAGGTGTTTAATGTCGATCAAGAGAGAGAACTAGCATCCTATGTCAAAAATATGGAAAATCGCTTTTTTGGTTTAACCACAAAGGATCTCAGGCGTCTCGCATATGAGCTAGccgaaaaaaataaattgcaacACAGTTTCTGTCACGAGACGAAAATGGCGGGAAGAATATGGCTCGAAAATTTCTTAAAGCGTAATACGGACTTAAGTCTGCGAAAACCCGAACCGACTTCAGCAGCTCGAGCGTCTGGCTTCAACCAAGTTCAAGTTAAACGATTTTTCGATTTGTTGACAGACATTACAACAAAGTATAAATTGACACCCGATCGAATATTTAATGTCGATGAAACGGGCATGACAACTGTTCCAAAAAGTATGCCTCGGATTGTTGGTACAAAAGGAAAGAAACAGGTGGGGTTATTAACATCTGCTGAGCGCGGCCAGCTTGTCACTGTTGTTTGCTGCTTTGGTGCGGACGGGTCTTACATGCCTCCCTTATTCGTGTTCCCTCGTAAAAGGATGAAACCCGAATTGATGCTAAATGCTCCACGAGGATCTTCGGCGTTTTGTCATGAAAGCGGGTGGATTCAAAAAGATATTTTCACAGAATGGTTCAAGAAGTTCATCAAATAA
- Protein Sequence
- MVNNYKRKSDRQSWREEDMKNAIEKVATRKMGLNKAAATFNVPKTTLIRRLTKYESTKDLTVATEKKMGRYEKVFNVDQERELASYVKNMENRFFGLTTKDLRRLAYELAEKNKLQHSFCHETKMAGRIWLENFLKRNTDLSLRKPEPTSAARASGFNQVQVKRFFDLLTDITTKYKLTPDRIFNVDETGMTTVPKSMPRIVGTKGKKQVGLLTSAERGQLVTVVCCFGADGSYMPPLFVFPRKRMKPELMLNAPRGSSAFCHESGWIQKDIFTEWFKKFIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091754;
- 90% Identity
- iTF_01166549;
- 80% Identity
- -