Odup009276.1
Basic Information
- Insect
- Ochropacha duplaris
- Gene Symbol
- -
- Assembly
- GCA_951361185.1
- Location
- OX592698.1:12320054-12320729[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-13 8e-11 42.1 0.0 3 43 17 57 16 59 0.92
Sequence Information
- Coding Sequence
- ATGGTTAATAATTATAGAAGAACGTCTAATCGGAATTCATGGAACGGGACTAACATGAAAAAAGCTATTGAGAAAGTCATATCCAAAGAAATGGGGCTTAACAAGGCTTCTACTGAGTTTAATGTgccaaaaacaacattaaaacgTAGGTTGGAGAAATATATGACTACCCAAGACATGGATAGAGCTACAGAGAAGAAGTTGGGCAGAGATGACGAAATAccgaagaaaagaaaagcagcaACCAAAGGAAAGAAGTCTTTAGTAAAGGGATCGAAGAAgaaaatgacaaaatataaGAACGACACCATACAAATATCATCGAAAggcaaagctagtaaaaaaagtgatataaagGCAACTAAAAAGAACAGAAGTGACAGTTCCTCCGAAGATGATGATGCGGAATGCCTTTACTGTGGCCACATGTATTCGGAATCAACAGATGGGTGGGTGCAATGTCAAGATTGCCAATCATGGGCACATTGCGGTTGCGCTGGAGTAGACGACAACGATGATGAAGTCAAATTTGTGTGCGAAAGATGCTCTGATTAG
- Protein Sequence
- MVNNYRRTSNRNSWNGTNMKKAIEKVISKEMGLNKASTEFNVPKTTLKRRLEKYMTTQDMDRATEKKLGRDDEIPKKRKAATKGKKSLVKGSKKKMTKYKNDTIQISSKGKASKKSDIKATKKNRSDSSSEDDDAECLYCGHMYSESTDGWVQCQDCQSWAHCGCAGVDDNDDEVKFVCERCSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01083242;
- 90% Identity
- iTF_01083247; iTF_01083248;
- 80% Identity
- -