Osyl014019.1
Basic Information
- Insect
- Ochlodes sylvanus
- Gene Symbol
- -
- Assembly
- GCA_905404295.1
- Location
- FR990146.1:1559444-1567975[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00018 0.015 16.2 1.5 1 23 287 309 287 309 0.98 2 11 0.8 69 4.7 3.2 1 21 316 336 316 338 0.94 3 11 0.21 18 6.6 0.4 1 23 342 365 342 365 0.92 4 11 2.3e-06 0.00019 22.2 0.5 1 23 371 394 371 394 0.93 5 11 0.00019 0.016 16.1 1.5 2 23 401 423 400 423 0.94 6 11 6.3e-05 0.0054 17.6 0.2 1 23 436 458 436 458 0.94 7 11 9.7e-05 0.0084 17.0 0.1 1 21 464 484 464 489 0.93 8 11 9.5e-05 0.0081 17.1 0.3 2 23 498 520 497 520 0.95 9 11 5.7e-05 0.0049 17.8 0.6 1 23 526 549 526 549 0.96 10 11 2.2e-07 1.9e-05 25.4 0.5 1 23 558 580 558 580 0.98 11 11 0.0024 0.2 12.7 0.0 1 23 586 609 586 609 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTGATGAAAATAGCGAGAAACTCGTGTGTTGTCTAGGCTGTTTATCTAGCGACAGTGATAGCGCCTTACAGGATTATAAGTTAAGCAACGGAGCTTTAAAATCAATTATTCAGGTAGATGAGATATGTCTGTGTTATATATGCAAGCATTTAGCTCAGAAAATGGATCTGTTTATTCAAAATATACAAGGAAATCAAATATTACTTGAAAATATACATAATAATATAACAACGTCTATCTTAGAAACAGCCCGAACACAGTCCCAGCTACTCTGTCTGACAAGTACAAAATTAGATCCTGTAGAAGTAGGCAAGAGTAAAGATATGACTATCAAAATTGAGGTGAAGGATGAGAATGGCTTTGCAAACCACATGAATGGTGACTTCATTGACGACGATAATGACTTCCAAGATTCTGCAGAGTCTTTTGATGCAGTAAAAGAAGAAGACAACATCATTCTAAAAGACTTATTAAAAGAAGAATTTGGTGTAAATGGACTAACTATGAAATTAAGGCGGCCTTTGAAAAAAAGAACAGTGGAGAAGAAAGTTGGTAGGAGAAAAAAACATTCTAAAAGTAAAAGAGGTGTTGAAAAAGAATATTCTAAAGAAGATTACCCATTAAGTGATTTGCTGAAAGAAGAATTAGAAGGAGAAGTTGTAGGAGACTTGGATATAGAAGATTTTGATAAAAGAAATATTCGAAAAACAAAGGATTTTTTACAAAAGAAGACAAAAGATTTTGACACAAAAAATGATTTATATAAAACCAAAATGATTTACATAACGAGGGAGCAATGCATGGAGGAACGGGTTAGAATGGCTGAAGATAAGAAGTACCTCAATGCTACGTACAAATGTGCCAACTGTGTCAAAGGATTTTATTTCAAGGACAGCTTTGAGAAACATATGGAGAGTCATCGCGAGACATCGGGTGACTACGAATGTGATATTTGCAAGCAGCGAATGGATTCGAAAGTAAAGCTGTTACGTCACAAGAAGTGTCACGAGGTTCGATATAAATGCTTGGACTGCGGACTGACCAGGATCAATCAACTGACTATACGAGAGCATTACAATGCATTTCACCTGAAACTGCATTCGTACTTATGTCCGCACTGCCCTAAAGCTTTCATCCGCCAGGTGTCGCTGCGGAAGCACATCGCGTACCTCCACAAGGGCAAGGTGCGCGTCAAATGCCAGCACTGTCAGAAGACGTACGCTAACAAGGAGGTCTTGAAGTCGCATATGATTGCGAGACATCCTCAGGAGGTGTCAGCCGGGGAGAGACTGAAGCGGTTCGTGTGCCAGGAGTGTGGGATGGCGTTCAAGGCTCCCTCGCAGCTGCGGAACCACAGCGTCAAACACTCCATCATCAGAGACTACTACTGTGTAGAGTGTGACAAAGGGTTCAAATCCGAAGCGGCGTTCAAGCGGCACGTGAAAATTGCCGCACCGCACGTCAATTATATGGAACTGCCATTACCCTGCGCGCGCTGCGACAAGCGGTTCGCGATCCGGCGCGACCTCGAGCGGCACATGAACCGGGTGCACCTCAACATCCGGCCGTTCCAGTGCGACAAGTGTGACCGGGCGTACGTCAACAATTGGTCTTTGAATGAACATAAGAGATTCGTGCACGATGGTCACAAGCGTCCTCTGAAGTATCCTTGCTCCATGTGTGATAAGGTATTCGATCGCAACCAAACGTTGAAAGCGCACGTGCGCACGCACACGGGCGAGCGGCCGTACCCGTGCGCGCGCTGCCCGGCGCGGTTCGCGCAGCGCAGCGCGCTCGGCACGCACGTGCGGCTCGTGCATCTGCGGCTCGCGCGCGACGGCACGCCGCGCCGCCCGCGCGAGTAG
- Protein Sequence
- MEADENSEKLVCCLGCLSSDSDSALQDYKLSNGALKSIIQVDEICLCYICKHLAQKMDLFIQNIQGNQILLENIHNNITTSILETARTQSQLLCLTSTKLDPVEVGKSKDMTIKIEVKDENGFANHMNGDFIDDDNDFQDSAESFDAVKEEDNIILKDLLKEEFGVNGLTMKLRRPLKKRTVEKKVGRRKKHSKSKRGVEKEYSKEDYPLSDLLKEELEGEVVGDLDIEDFDKRNIRKTKDFLQKKTKDFDTKNDLYKTKMIYITREQCMEERVRMAEDKKYLNATYKCANCVKGFYFKDSFEKHMESHRETSGDYECDICKQRMDSKVKLLRHKKCHEVRYKCLDCGLTRINQLTIREHYNAFHLKLHSYLCPHCPKAFIRQVSLRKHIAYLHKGKVRVKCQHCQKTYANKEVLKSHMIARHPQEVSAGERLKRFVCQECGMAFKAPSQLRNHSVKHSIIRDYYCVECDKGFKSEAAFKRHVKIAAPHVNYMELPLPCARCDKRFAIRRDLERHMNRVHLNIRPFQCDKCDRAYVNNWSLNEHKRFVHDGHKRPLKYPCSMCDKVFDRNQTLKAHVRTHTGERPYPCARCPARFAQRSALGTHVRLVHLRLARDGTPRRPRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01438248; iTF_00887609; iTF_00795899;
- 90% Identity
- -
- 80% Identity
- -