Lacc004294.1
Basic Information
- Insect
- Lerema accius
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold4402:30531-39047[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00019 0.012 16.0 1.1 1 23 280 302 280 302 0.98 2 11 3.3 2e+02 2.7 3.4 1 21 309 329 309 331 0.92 3 11 6.4 3.9e+02 1.8 0.2 1 23 335 358 335 358 0.89 4 11 1.9e-07 1.1e-05 25.5 0.9 1 23 364 387 364 387 0.95 5 11 0.00017 0.011 16.1 1.5 2 23 394 416 393 416 0.94 6 11 1.2e-06 7.5e-05 22.9 1.1 2 23 430 451 429 451 0.96 7 11 8.8e-05 0.0055 17.1 0.1 1 21 457 477 457 482 0.93 8 11 0.00012 0.0071 16.7 0.4 2 23 491 513 490 513 0.96 9 11 5.2e-05 0.0032 17.8 0.6 1 23 519 542 519 542 0.96 10 11 6e-08 3.7e-06 27.0 0.5 1 23 551 573 551 573 0.99 11 11 0.0048 0.29 11.6 0.0 1 23 579 602 579 602 0.96
Sequence Information
- Coding Sequence
- ATGGAAACTGCTGAAAAAAACGAAAAAATCGTGTGTTGCCTTGCCTGTTTGTCTACCGATCTCGATAGTGCCTTGTACGACTATAAGATAAGCAACGGGACTTTAAAATCCATTATTCAGGTTGATGAAATATGTCTGTGTTATATATGCAGACATTTGGCCCAGAAAATGGAGCTCTTTATACAAAATATACAGAGCAATCAGATATTACTTGAAAATATTCATAATAATATAACAACTTCAATCCTCGAAACAGCAAGGAACCAATCACAGTTATTATTTCTAACAAGAACTCGACTCAAGCCAGTAGATATAAGCAATACTAATACTAAAGATATGACAATCAAAGTTGAAGTCAAAGATGAGAATGGATTCTCCAATCACTCAGGTGGAGAATTTGTTGATGATGACAATGATTTCCAAGACTCAACAGTAAAGGAAGAAGATGATTTTCCTTTAAAGAACTTATTAAAAGAAGAATTTGGTGTTGATCAATTAAATATCAAATTAAAACGGCCCTTGAAAAGAACTATACAGAAGAAAGTTGGTCGAAGAAAAAAACATTCGAAAAATAAAAGAGGAGTCGAAAAAGATTATTCTAAAGAAGATTATCCAATAAGTGATTTGCTAAAAGAAGAATTAGTTGCAGAAGAATTAGGCATAGAAGATTGTGATAAAAGTAATATTAAAAGCACTAAAGATTTCGCAAGAAAGAAGACAAAAGGTTTTGATATAAAAAAGGATTTATATAAAACCAAAATGGTGTATATAACGCGGGAACAATGTATGGAAGAAAGACTTAAAATGGCTGAGGATAAAAAATACCTTAATTGTACATACAAATGTGCGGATTGTGTTAAAGGATTCTACTTTAAAGAGAGCTATGAAAAACATATGGAGAATCATAGTGAGGCAATGGGTGACTACGAATGTGATATTTGCAAGCAGAGAATGGATTCCAAACTAAAGTTGCTACGTCACAAAAAATGTCACGAGGTCCGATATAAATGCATAGATTGTGGGTTAACAAGAATAAATCGCTTGACAATACGAGAACATTATAACGCCATACACTTGAAGCTACATTCGTATGAGTGTCCACATTGTCCGAAGACTTTCATCCGCCAGGTGTCGCTACGGAAGCACATAGCATACCTGCACAGAGGTAAAGTGCGTGTCAAATGTCAACATTGTCAAAAAACATACGCTAATAAAGAGGTTTTGAAGTCTCATATGATCGCGAGACACCCTCAGGAGGTGTCGGCGGGAGAGGTGTTGAAGCGCTGCGTCTGTCAGGAGTGTGGGAAGGGCTTTAAAGCGCCGTCGCAACTACGGAACCATATGCTCAAACATTCGCTCATTAGAAACTATTACTGCGTTGAATGTGACAAAGGATTCAAATCTGAAGCGGCATTCAAACGTCACGTGAAAATCGCAGCGCCACATGTCAATTACTTAGAATTACCATTACCTTGTAGCCGTTGTGAAAAACGGTTCGCGATTCGACGCGACTTAGAGCGACATATGAACAGAGTACATCTTAATATACGACCGTTTCAGTGCGACAAATGTGATAGGGCCTACGTCAATAATTGGTCTCTGAATGAGCATAAGCGCTTCGTCCACGACGGTCATAAGCGGCCTCTGAAGTATCCATGCTCTATGTGTGATAAAGTTTTCGATCGTAATCAAACTTTGAAAGCGCACATACGCACACATACAGGGGAGAGACCATTTCCGTGTGGGCGATGCGCTGCTAGATTCGCTCAGAGTAGTGCTTTAGGCACGCATATAAGGCTGGTACATCTAAGACTAGCGCGGAATGGAACGCCAAGAAGAACTCGCGATAACTGA
- Protein Sequence
- METAEKNEKIVCCLACLSTDLDSALYDYKISNGTLKSIIQVDEICLCYICRHLAQKMELFIQNIQSNQILLENIHNNITTSILETARNQSQLLFLTRTRLKPVDISNTNTKDMTIKVEVKDENGFSNHSGGEFVDDDNDFQDSTVKEEDDFPLKNLLKEEFGVDQLNIKLKRPLKRTIQKKVGRRKKHSKNKRGVEKDYSKEDYPISDLLKEELVAEELGIEDCDKSNIKSTKDFARKKTKGFDIKKDLYKTKMVYITREQCMEERLKMAEDKKYLNCTYKCADCVKGFYFKESYEKHMENHSEAMGDYECDICKQRMDSKLKLLRHKKCHEVRYKCIDCGLTRINRLTIREHYNAIHLKLHSYECPHCPKTFIRQVSLRKHIAYLHRGKVRVKCQHCQKTYANKEVLKSHMIARHPQEVSAGEVLKRCVCQECGKGFKAPSQLRNHMLKHSLIRNYYCVECDKGFKSEAAFKRHVKIAAPHVNYLELPLPCSRCEKRFAIRRDLERHMNRVHLNIRPFQCDKCDRAYVNNWSLNEHKRFVHDGHKRPLKYPCSMCDKVFDRNQTLKAHIRTHTGERPFPCGRCAARFAQSSALGTHIRLVHLRLARNGTPRRTRDN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01082665;
- 90% Identity
- -
- 80% Identity
- -