Nnit005222.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374640.1:7727247-7740753[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.9e-05 0.0054 18.0 1.2 1 23 271 293 271 293 0.99 2 13 0.074 8.1 8.0 0.9 3 23 303 324 301 324 0.94 3 13 2.6 2.9e+02 3.1 0.3 1 23 328 351 328 353 0.75 4 13 0.0011 0.12 13.8 2.3 1 23 431 453 431 453 0.99 5 13 0.0023 0.25 12.8 1.8 2 23 462 484 461 484 0.96 6 13 0.57 63 5.2 4.6 1 23 488 510 488 510 0.98 7 13 1.3e-05 0.0015 19.8 2.1 1 23 515 538 515 538 0.98 8 13 0.53 58 5.3 1.6 3 23 544 565 543 565 0.85 9 13 1.4 1.5e+02 4.0 1.5 2 20 585 603 584 605 0.92 10 13 0.066 7.2 8.2 0.2 2 23 653 675 652 675 0.94 11 13 2.8e-06 0.00031 21.9 1.3 1 23 684 706 684 706 0.98 12 13 2.4e-05 0.0027 18.9 0.7 1 23 712 734 712 734 0.97 13 13 6e-06 0.00065 20.9 2.0 1 23 740 763 740 763 0.98
Sequence Information
- Coding Sequence
- ATGTGGGATTTGAAAGTGTGTATAGTATGTTTTACAATGGATGTTAAATTATTTAGTATGGATATAGATAATTTGCGACACCAATACAACTTACTGACAGGCCTTCAGATGAGAGAAGCAAATGGTATGCCTGAATATTTATGTTTGGAATGTGCTACTTACACAAAGCGGTTCATAAAGTTTAGAGACAAATGTCATAGAGCACATTTTGCCTTACAAAAACTACTGCAAAGTAAAAAACAGATTAAAAAACACACATTGAAAGCTGTTGACCGAAACACCATTAGCAACAAACCTTATCTTTCATATCTAGATGTCAGTAAAACACATTATGAAGAAATTAAATTTCAATGGACTAAAAATAATCGTTCATGTTTTTCAACAAATGATATTATACCTACAGTACATTGTACAACACTTAAAAAGGAAGAAATGTTTGAGGAAACCGTTAGTAATGGAGATATTAATGTTAAACATGAACATGCACAGTTTTTACAAGTAGATTTTGAACATGAAACCAGTCCAAGTGGAAGTGTTTGTGGACAACCAGAGCCCAGCAGTAATGAGAATGATACACTCATATCAGATGTTAATGATTGTTTTGAAAGTGATACTGAAATAAATGATTACATTTCTGAAGTACCATGTAAAGTAGAAAAAGTAGATAAAATTTTGGACACTAAACGCAAGAAAACAAATGATGAAGCTGATGGCAGCGAAATGGACCCAGAGTATGCCACTTTATACCCTATTGCTAAGAATGAAGCTCAGGCTGCTGTTGAAATCTACAAAATGCTCAGTACTGGAAAGTATAAGTGCAATATATGTAGTAAACCATACTATAATGAAAACAGATTAAAAGTTCATTTACGTATGCATGATAAGCATATCAGTGGGAATTATTGGTGTGAATTATGTAATTATTATTATAAAACAGACTTTTTGTTACGAACTCACATGACTGAAAAACACATGTATAAATATGTCTGTAAAAAGTGCCCAGAAGTAAATTTCGATAGAACATCAGCCAAGCAGCACTACATTCTCGTACACATGCAGAAGCGAAAAACAAGAAATGATGACTGGGAACAATCAAGACCTAGTTGGCTTAGTAACAAAGGTGGAAAACGTATCAAAGGTGATAAACGACTGAAAACCTTTGCTACGCGTTCAGGCAGGAAACCCAACGCGTTGCCAGACGATTTCCTTGTGTATACTCCAGTGAGTCAAGAGGAACAGTATCAATTAGTACTAGATAGAAAGCTTACCAGAAATTATACAGATGCTAAGTTCAAATGTGAAATGTGCTTTAGGGGATATAGAGAACAAGGAACTTATGACAAACATATGAGGAAACACGATCCAGTATATTCTGGTAGGATGCAGTGCGACATGTGCAAGCTTTACTTTAAAGACACTAGGAAATTGTATAAACACATGAATATCACACATTTGTTCAAGTATTCCTGTCAAATGTGTAGTTACGTGTGCTACAATAGGGGTCAAGCGCATATGCATTATAGATGGCATAAGAACGTCACATATTCGTGTCCACACTGCGGAAAGGAATTTAAGAAAGCGTCTACAAGATTAACTCACATCAGAATAAAGCATCCCTCGACCAACATTTGCAATCTCTGTGGCCATAGCTTCGTAAGCGAAAATGGACTTTATTGTCATAAACAAATAGCGCATTCGACAGAGGAGCTAGAAACTAGTGCAGCAATACCAGTGAACACGTCGGACCCCTGCTATTGCGTGGACTGTAACGTCCACTTCCTGAGTCAGTCCGCCTTCACCACCCACCTCGGCAGCTCCAACAAACACGCCACCACCAACCAGTCTATAAAGGCGAGTCGCCCACGCGGTCCCCGAGACGGCACGTCGCGGTCTGTGGGCCGACCGCGTCGGGCGGGAGCTTCCGAAATACTCAACAATGGAGTTGCGACGGCAACCACCTGCGAGATTTGCGGCAAGTTTTTGGTGAACGACGTGCAAGCCCGCAAGCATTACGAGTCCGAACACCCCGGAGCGGAGTTCCTCAAGCGGTATATGTGCGACGTTTGCGGCCACACTACTAAGCAATACGCAAACTTGATGGTTCATATGCGCACGCACACCAACGAGAAGCCCTACGAGTGCCCTCACTGCGACCGCCGGTTCAGTATGCCCAGCAACCGCGACAGGCACATTGTGGTTCACACAGGAGAGAAACGTTACGAATGCCAACACTGCAACCGCCGTTTCACCCAAAGCAGCGCGGTTAAACTCCACATACAAACGGTCCACTTGAAGATCCCGTACGCCCCCTGGGACAAGAAAAACAGAAAGCGACGTAAGGAACTAGAAGGTACTTCCGCGCCAGTGAGTACCGTTAACGCTGTCACAGCGTGTCCACAACCGCAGCCGCAGAAAATTATTATAGATCACGGAGATTATTTAAACGCTTATATTACATATAATGATGAATAA
- Protein Sequence
- MWDLKVCIVCFTMDVKLFSMDIDNLRHQYNLLTGLQMREANGMPEYLCLECATYTKRFIKFRDKCHRAHFALQKLLQSKKQIKKHTLKAVDRNTISNKPYLSYLDVSKTHYEEIKFQWTKNNRSCFSTNDIIPTVHCTTLKKEEMFEETVSNGDINVKHEHAQFLQVDFEHETSPSGSVCGQPEPSSNENDTLISDVNDCFESDTEINDYISEVPCKVEKVDKILDTKRKKTNDEADGSEMDPEYATLYPIAKNEAQAAVEIYKMLSTGKYKCNICSKPYYNENRLKVHLRMHDKHISGNYWCELCNYYYKTDFLLRTHMTEKHMYKYVCKKCPEVNFDRTSAKQHYILVHMQKRKTRNDDWEQSRPSWLSNKGGKRIKGDKRLKTFATRSGRKPNALPDDFLVYTPVSQEEQYQLVLDRKLTRNYTDAKFKCEMCFRGYREQGTYDKHMRKHDPVYSGRMQCDMCKLYFKDTRKLYKHMNITHLFKYSCQMCSYVCYNRGQAHMHYRWHKNVTYSCPHCGKEFKKASTRLTHIRIKHPSTNICNLCGHSFVSENGLYCHKQIAHSTEELETSAAIPVNTSDPCYCVDCNVHFLSQSAFTTHLGSSNKHATTNQSIKASRPRGPRDGTSRSVGRPRRAGASEILNNGVATATTCEICGKFLVNDVQARKHYESEHPGAEFLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYECPHCDRRFSMPSNRDRHIVVHTGEKRYECQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSTVNAVTACPQPQPQKIIIDHGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006515;
- 90% Identity
- iTF_00006515;
- 80% Identity
- -