Aeph012937.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- -
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000089.1:621657-629761[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2e-05 0.0035 18.0 1.3 1 23 275 297 275 297 0.99 2 13 0.076 5.2 8.0 0.9 3 23 307 328 305 328 0.94 3 13 2.4 1.7e+02 3.3 0.3 1 23 332 355 332 358 0.69 4 13 0.0011 0.075 13.8 2.3 1 23 435 457 435 457 0.99 5 13 0.0024 0.16 12.7 1.8 2 23 466 488 465 488 0.96 6 13 0.59 40 5.2 4.6 1 23 492 514 492 514 0.98 7 13 1.4e-05 0.00094 19.8 2.1 1 23 519 542 519 542 0.98 8 13 0.55 38 5.3 1.6 3 23 548 569 547 569 0.85 9 13 0.68 47 5.0 0.5 1 20 588 607 588 609 0.94 10 13 0.068 4.7 8.1 0.2 2 23 657 679 656 679 0.94 11 13 2.9e-06 0.0002 21.9 1.3 1 23 688 710 688 710 0.98 12 13 2.5e-05 0.0017 18.9 0.7 1 23 716 738 716 738 0.97 13 13 6.2e-06 0.00042 20.9 2.0 1 23 744 767 744 767 0.98
Sequence Information
- Coding Sequence
- ATGTGGGATTTGAAAGTGTGTATTGTATGTTTTACAATGGATGTTAAATTATTTAACATGGACAGGGATAATTTACGATATCAATACAACTTACTAACAGGTCTTCAGATGAAAAAAGCAAGTGGTTTGCCTGAATATTTATGTTTGGAATGTGTTTCGTATATAAAACGGTTTATAAAGTTCCGAGATAAATGTCATAGAGCCCATTTTGCCTTACAAAAACTACTGCAAAGCAAAAAGCAGATAAAGAAAAACACATTGAAAGCTATTGATCAAAAGACTATTAGCAATAAACCTTATCTTTCATATTTAGATGTCAGTAAAACACATTATGAAGAAATAAAATTTCAATGGACTAAAAATAATCGTTCATGTTTTTCAACAAATGACGTAATACCTACAGTGCATTGTACTACACTAAAAAAAGAAGAAATGTTCGAGGAAATTGTAAATAATGGAGATATTAATGTTAAACATGAAACTACACAGTTTTTAGATGTGGATTTTGGGTATGAAAATAGTATTAGTACAAATGCAGTAGAAAGATTAAGTGAGCGACTAGTGCCCAGCAGTAATGAAAATGATACACTCATATCAGATGATAATGATTGTTTTGAAAGTGATGGTGAAACAAACAATTACATTTCTGAAGTACCATGTAAAATGGAAGAATTAGATAAAAATTTAGACATCAAACGTAAAAAAATAAGTGATGAACCAGATGGCAGTGAACTGGACCCAGAATATGCCACTCTTTTCCCAATTGCAAAGAATGAAGCACAGGCCGCTGTTGAAATCTATAAAATGCTCAGTACTGGAAAATATAAGTGCAACATTTGTACTAAGCCATACTATAATGAAAATAGATTAAAAGTTCATTTACGTATGCATGATAAGCATGTCAGTGGGAATTATTGGTGTGAATTATGTAATTATTATTATAAAACAGACTTCTTGTTACGAACTCACATGACTGAAAAGCATATGTATAAATATGTCTGTAAAAAGTGCCCAGAAGTAAATTTCGACAGAACATCAGCCAAGCAGCACTACATTCTCGCACACATGCAGAAGCGAAAAACAAAAAATAATGACTGGGAGCAATCAAGACCTAGTTGGCTTAGCAATAAAGGTGGAAAACGAATAAAAACCGATAAACGAATCAAAGCCTTTGCTACTCGTTCAGGCAGAAAACCAAACGCGTTACCTGATGATTTCCTTGTGTACACTCCAGTGAGCCAGGAAGAACAGTATCAATTAGTACAAGATAGAAAGTTAACGAGGAATTATACAGATGCTAGGTTTAAATGTGAAATGTGCTTCAGGGGATATAGAGAACAAGGAACGTATGACAAACATATGAGGAAACATGATCCTGTATATTCTGGTAAAATGCAGTGTGATATGTGCAAGCTGTACTTTAAAGACACTAGGAAATTGTATAAACATATGAATATTACACATTTGTTCAAGTACTCGTGTCAAATGTGTAGTTACGTGTGCTACAATAGGGGTCAAGCGCACATGCACTATAGGTGGCATAAAAACGTTACGTATTCGTGTCCACATTGCGGAAAAGAATTTAAGAAAGCATCAACTAGGTTAACTCACATCAGAATAAAGCATCCATCGACCAATATTTGCAATCTCTGTGGCCACAGCTTTGTTAGCGAAAATGGACTGTATTGTCATAAGCAAATAGCACATTCTTCAGAGGAATTAGAAACTAGTGCAGCAATACCAGTGAACACGGCGGACCCTTACTATTGCGTGGACTGCAACGTCCACTTCTTGAGCCAAACCGCCTTCACCACCCACCTCGGCAGCTCCAACAAGCATGCCACCACCAACCAATCGATAAAGACGAGTCGCCCTCGTGGTACTCGGGAAGGAGCTACGAGGGCCTCCGGGAGGCCTCGGCGGGCGGGGACATCAGAAATACTCAACAACGGTGTCGCGACGGCAACCACTTGCGAGATATGCGGCAAGTTCTTAGTGAACGACGTGCAAGCTCGCAAGCATTACGAGTCCGAACACCCCGGAGCTGAGTTCCTGAAGCGGTACATGTGCGATGTCTGCGGCCACACTACTAAGCAATACGCAAATTTGATGGTGCATATGCGCACGCACACGAACGAGAAGCCTTACGAGTGCCCGCACTGCGACCGCCGCTTCAGTATGCCCAGCAACCGCGACAGGCATATTGTGGTTCACACAGGAGAGAAACGTTATGAATGTCAACACTGCAATCGCCGTTTCACTCAAAGCAGCGCAGTCAAACTCCACATACAAACGGTCCACTTGAAGATCCCCTATGCCCCCTGGGACAAGAAAAACAGGAAACGACGTAAGGAACTAGAAGGTACTTCCGCCCCAGTGAGTACTGTTAACGCTGTCACATCTTGTCTACAACCACAGCCTCAGAAAATAATTATAGATCAGGGAGATTATTTAAACGCCTATATCACTTATAATGATGAATAA
- Protein Sequence
- MWDLKVCIVCFTMDVKLFNMDRDNLRYQYNLLTGLQMKKASGLPEYLCLECVSYIKRFIKFRDKCHRAHFALQKLLQSKKQIKKNTLKAIDQKTISNKPYLSYLDVSKTHYEEIKFQWTKNNRSCFSTNDVIPTVHCTTLKKEEMFEEIVNNGDINVKHETTQFLDVDFGYENSISTNAVERLSERLVPSSNENDTLISDDNDCFESDGETNNYISEVPCKMEELDKNLDIKRKKISDEPDGSELDPEYATLFPIAKNEAQAAVEIYKMLSTGKYKCNICTKPYYNENRLKVHLRMHDKHVSGNYWCELCNYYYKTDFLLRTHMTEKHMYKYVCKKCPEVNFDRTSAKQHYILAHMQKRKTKNNDWEQSRPSWLSNKGGKRIKTDKRIKAFATRSGRKPNALPDDFLVYTPVSQEEQYQLVQDRKLTRNYTDARFKCEMCFRGYREQGTYDKHMRKHDPVYSGKMQCDMCKLYFKDTRKLYKHMNITHLFKYSCQMCSYVCYNRGQAHMHYRWHKNVTYSCPHCGKEFKKASTRLTHIRIKHPSTNICNLCGHSFVSENGLYCHKQIAHSSEELETSAAIPVNTADPYYCVDCNVHFLSQTAFTTHLGSSNKHATTNQSIKTSRPRGTREGATRASGRPRRAGTSEILNNGVATATTCEICGKFLVNDVQARKHYESEHPGAEFLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYECPHCDRRFSMPSNRDRHIVVHTGEKRYECQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGTSAPVSTVNAVTSCLQPQPQKIIIDQGDYLNAYITYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081862;
- 90% Identity
- iTF_01081862;
- 80% Identity
- -