Nnit031979.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374643.1:2579020-2584920[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0072 0.79 11.2 6.1 1 23 158 181 158 181 0.97 2 18 0.0005 0.054 14.8 0.5 1 23 190 213 190 213 0.96 3 18 0.0042 0.46 11.9 0.5 2 23 226 248 226 248 0.97 4 18 0.00016 0.018 16.4 2.2 1 23 257 280 257 280 0.96 5 18 1.1e-05 0.0012 20.0 1.2 1 23 292 315 292 315 0.96 6 18 0.00014 0.015 16.6 0.7 2 23 343 365 342 365 0.97 7 18 0.00079 0.086 14.2 1.6 2 23 375 397 374 397 0.96 8 18 0.032 3.5 9.2 1.7 3 19 403 419 401 422 0.92 9 18 0.00027 0.03 15.7 0.8 2 21 427 446 426 449 0.94 10 18 0.13 14 7.3 1.8 3 23 459 480 458 480 0.91 11 18 0.00052 0.057 14.8 2.1 1 23 485 508 485 508 0.93 12 18 0.00015 0.016 16.5 0.6 2 23 520 542 519 542 0.97 13 18 0.0047 0.52 11.7 1.1 1 23 566 589 566 589 0.95 14 18 6.4 7e+02 1.9 2.1 2 23 596 617 595 617 0.82 15 18 0.0096 1.1 10.8 1.0 2 23 623 644 622 644 0.96 16 18 7.8 8.6e+02 1.6 1.8 3 23 652 674 650 674 0.90 17 18 0.021 2.3 9.7 0.2 1 23 710 732 710 732 0.97 18 18 0.17 18 6.9 2.0 1 23 738 761 738 761 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCAGTAAAAGAGGAAATAGATTTAGAAAAAGTTGAAAAGGTTATTGATAAATTTAATGGTCGGAAGGATCCCACTACATTTTTGCCAGAAGAACCAATGTCATATGAAATTAAGCAGAAAAAGAAAAAAAAGAAAAAGAAGAAAATTGAAGATCCATTCAAAGATGTAGATGTGAAGGTTCCATACTCTACGCCAATCGAAATGGCGGTTGATGTTAAGTTTGATCCAGAAATTACCATTAAAGTTGAAAATATTGAAGTGGAATTAGATTTCAATGATTTCGCAAACAACTCTGGTCTTATGTTAGAAGGCCCTCAGAGCGAAGATAGTCAAGAACCGGTAGTAAAACTCGAGGAGCAAAACAAAGAAGCGGTCCTGCTAACCTTCGAGAGCATAGTCAATAAACCAGCCGAGGATACGGTGTTCGGCTACACGCAAGACGCGTCAAAACCACCAGCCACATTGCACGTCTGCAAAATATGCCATCTAGTCTTTCAATCCACGAAAACATTAAAAATGCACCAAAAGAGAAAACATAAGGTGTTTAGGAAATCGTTCAAACATATCTGCGATTATTGTGGCATGGCTTATGAAATGAAGAACAGCTTAGTCGCACATATAAAGAGGAAACACGCTCCCGGCGTAACTGAAGACGATAATCAAGAAAGAACCTGCGAAATATGCGCTTTAGTCTTTAAAGGGGTGTCTAGATTGCGGATGCATATGAGAAGGAAACATGGTTCTTTTAAAGATTCATTCAAACACGCTTGCCCGGATTGCGGCTTGACGTACGACAAACATAGAAGTTTAATTGTTCACATGAAAAGAAAGCATTCTGGCGATAAAAAGCAGGTGGCAGACCAGTGGTTCAACTGCCCGTTCTGTCCGAAGGTATTTTCGAGACGGGAAACTTACGCACGTCATGTACAAAGGAAGCACAAAGTGACAGAGGAAGGCGCATCACGCGATGCAGTAGCTGATAATTTAGAAAGCTGTAGAAATGAAAAAACTGGTGAAATAACTTGTAGTGAGTGCCCTCTAGTCTTTTCTTCGATGAATTTTCTTAAATTACACATGAGGAGAAAGCATAACGCTTTGAAAGAGGACTTCAGACTTAAGTGTAGGATATGTAACTTGTCCTACAATAAAATAGAAAGCCTTAAAAGGCATGTTAGAAGAAAACACGATAAAGGCTCTCATTGTGAAGTGTGCAATAAACAGTTTGATACGAAAGAGTCGTATCTGAATCATTCTCATGTGAAAGTGATCAAAGAATGCACAATTTGCGGCTTAATTTTCTCTTCGCAAGGAGGTTTAGCGAAGCACTTGCGTTGCACACACAAAGTAGACTCTCCCAAGATAGCCTTTTGCAACATATGCAATGAAGGATTCCATGATAAAAGGCAACTTAAACCGCATTTTCTGAAAGTGCATCTGAAGGTATCTTACACATGTAAGTACTGTGCAAAGGTATTTAAAGCTAAAGAGAGCTACAGAAGGCATGTATTATTCCAGCACCCACTGAAGGAAGTGTTCAAAACAGAAATGCAACAGTGTGACCAATGTACAGAAATGTTTCCCGACGAAACTGAGTTGTGTAGACATATCAATATGGCACATGGGGTTAAACTTGAGGAGAAGACAGGACTTATTGACGTGAAAAAGGAAGAAAGTGACATTAAAGACTTATTCCAATGCACTAAATGCCCTGAAGTGTATTCTTGTTGGGATGAGCTCAAAGTTCATTTCGAAATGAACCATCAATTGAATACAGAAAGCCAGTGCCAGATGTGTGGGAAAATTATGCCCGTGGTTGAATTAAAAAAGCACATAAAGGAGATGCATTCGGTAAAGCTTCTAGAATGCAAATACTGTGACTTCCAAACAGCGAACAAGACAAGTATGACGCAGCATGTGTTGAGACATAAGAATGCAACGACCTTACATTGCGATTTCGCTGGCTGTAAATTTAATAGTTACTACGAAGGGGCTATGCAGAAACATAAGAGAAAGCATGCCGAGTTGGGTGTCAAACTGCAATGTACTCGATGCCCTTTCCAAACAATGAATAAATATATAATGAAATACCACGAAGAAGCACATATGACAGGCAAAAAGAGGTACAATTGTGACCAATGTGATTACGCCACGATACTCCCGGCTAACTTAGTACAACATAAATATAAGCATTCAAGTGAAAAACGGTTTAAGTGCGAAGTATGTCCATTCGCTACAAAGTACAATACCTCGTTGAGGTTTCATGTGAAGAAGAAACACTGTGATTTACCAAGTTTCAGTTAA
- Protein Sequence
- MVSVKEEIDLEKVEKVIDKFNGRKDPTTFLPEEPMSYEIKQKKKKKKKKKIEDPFKDVDVKVPYSTPIEMAVDVKFDPEITIKVENIEVELDFNDFANNSGLMLEGPQSEDSQEPVVKLEEQNKEAVLLTFESIVNKPAEDTVFGYTQDASKPPATLHVCKICHLVFQSTKTLKMHQKRKHKVFRKSFKHICDYCGMAYEMKNSLVAHIKRKHAPGVTEDDNQERTCEICALVFKGVSRLRMHMRRKHGSFKDSFKHACPDCGLTYDKHRSLIVHMKRKHSGDKKQVADQWFNCPFCPKVFSRRETYARHVQRKHKVTEEGASRDAVADNLESCRNEKTGEITCSECPLVFSSMNFLKLHMRRKHNALKEDFRLKCRICNLSYNKIESLKRHVRRKHDKGSHCEVCNKQFDTKESYLNHSHVKVIKECTICGLIFSSQGGLAKHLRCTHKVDSPKIAFCNICNEGFHDKRQLKPHFLKVHLKVSYTCKYCAKVFKAKESYRRHVLFQHPLKEVFKTEMQQCDQCTEMFPDETELCRHINMAHGVKLEEKTGLIDVKKEESDIKDLFQCTKCPEVYSCWDELKVHFEMNHQLNTESQCQMCGKIMPVVELKKHIKEMHSVKLLECKYCDFQTANKTSMTQHVLRHKNATTLHCDFAGCKFNSYYEGAMQKHKRKHAELGVKLQCTRCPFQTMNKYIMKYHEEAHMTGKKRYNCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006487;
- 90% Identity
- -
- 80% Identity
- -