Aeph000094.1
Basic Information
- Insect
- Acentria ephemerella
- Gene Symbol
- -
- Assembly
- GCA_943193655.1
- Location
- CALPDL010000001.1:1423945-1427496[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0072 0.49 11.2 6.0 1 23 157 180 157 180 0.97 2 17 0.00024 0.016 15.9 0.7 1 23 189 212 189 212 0.96 3 17 0.0048 0.33 11.8 0.5 2 23 225 247 225 247 0.97 4 17 0.0012 0.082 13.7 1.3 1 23 256 279 256 279 0.96 5 17 9.3e-05 0.0064 17.2 1.0 1 23 291 314 291 314 0.96 6 17 0.00011 0.0073 17.0 0.9 2 23 343 365 342 365 0.97 7 17 0.00023 0.015 16.0 1.7 2 23 375 397 374 397 0.96 8 17 0.032 2.2 9.2 1.7 3 19 403 419 401 422 0.92 9 17 0.00066 0.045 14.5 0.5 2 21 427 446 426 449 0.94 10 17 0.032 2.2 9.2 1.8 3 23 459 480 458 480 0.95 11 17 0.00077 0.053 14.3 2.2 1 23 485 508 485 508 0.93 12 17 0.00012 0.008 16.9 2.1 2 23 520 542 519 542 0.97 13 17 0.012 0.84 10.5 1.1 1 23 566 589 566 589 0.95 14 17 4.6 3.2e+02 2.4 0.5 2 23 596 617 595 617 0.79 15 17 0.0075 0.51 11.2 4.5 1 23 622 644 622 644 0.97 16 17 0.014 0.95 10.3 0.2 1 23 710 732 710 732 0.97 17 17 0.17 12 6.9 2.0 1 23 738 761 738 761 0.96
Sequence Information
- Coding Sequence
- ATGGTGTCAATAAAAAGAAAAATAGATTTAAAAATAAAAGTTGAAAAGATTAATAATGAATTCAATACTCGGAAGGATCCCACAACATTTTTGCCAGAAGAACCAATGTCATATGAAATTAAGGAGAAAAAGAAAAAAAAGAAAAAGAAGAAAATAGAAGATCCATTTAAAGATATAGATGTTAAAATTCCATACCCTACGCCAATTGAGATAGAGTCTGTGAAGCTAGATCCAGAAGTCTCTATCAAAGTAGAAAATATTGAAGTGGAATTGGATTTTAATGATTTCGCAAATAACTCTGGTCTGATGTTGGAAGGTCCTCAGAGTGAAGACAGCCAAGAACCAGCTGTAAGGCTTGAAGAGCACAACAAGGAAGCTGTGTTGCTAACCTTCGAGAGCATAGTCAATAAAGCCAACGATACAGTGTTGGGATACACGCCAGACGCACCATTGGCATCAGACACTTTACATGTCTGCAAAGTATGCCATCTAGTCTTTCAGTCTACAAAAACGTTGCAAACGCATCAAAAGAGAAAACACAAGGTGTACAGAAAATCCTTCAAACATATCTGCGATTATTGTGGCATGGCTTACGAAATGAAGAACAGTTTAGTAGCTCATATGAAGAGGAAACACGCGCCTGGCGCAACTGAAGACGATAATCTTGAGAGAACTTGTGACATATGCGCTCTAGTCTTTAAAGGGATATCACGGTTACGGATGCACATGAGAAGGAAACATGGCTCATTTCAAGAATCGTTCAAACACGTTTGCCGGGATTGTGGCTTGACTTACGACAAGTATAGAAGTTTAATTGTTCATATACAACGGAAACATACGAATGTGAAAAAGCCCATTACGAACCAGTGGTTTAACTGCCCGTTCTGTGCAAAAGTATTTTCGAGACGTGAAACTTACGCACGTCATGTACAAAGGAACCATAAAGTCTCTGATGATGACGCATCGCGCGATGCTGAAGTAGTTGAAAAATTAGAGAGTTGTAGAAATGAACAAACTGGTGAAATAACTTGTAAAGAGTGCCCTCTAGTCTTTTCGTCTATGAATTTTCTTAAATTGCACATGAGGAGAAAGCATAATGCTTTGAAAGAAGATTTCAGACTTAAGTGTAAGATATGTAATTTGTCTTATAATAAAATTGAAAGCCTTAAAAGGCACGTCAGAAGAAAACACGATAAAGGTTCCCATTGTGAAGTGTGCAATAAGCAGTTTGATACAAAGGAGTCGTATCTGAATCATTCTCATGTGAAAGTGATCAAGGAATGCACAATATGTGGGCTAATCTTCGCTTCGCAAGGAGGTTTAGCGAAGCACTTGCGCTGTACACACAAAATAGACTCGCCCAAGATAGTTTTTTGCAACATATGCAACCAAGGATTCCATGATAAAAGGCAACTGAAACCACATTTACTAAAAGTACATTTAAAAGTATCCTATACGTGCATGTACTGTTCAAAGGTGTTTAAAGCAAAAGAGAGCTATAGAAGGCATGTTTTATTCCAGCATCCAATGAAGAATGTTTTCAGAACGGAGATGCAACGTTGTGATCATTGTACAGAAATGTTTCCAGACGAGAATGAGCTATGTAGACATATCAATACAGCACATGGGGTTAATTCTGATGAGAAATCTGAACTTATTTGTGTGAAAAAGGAGGACGGTGACATTAAAGACTTATTTCAATGTACACAATGCCCTGAAGTTTATTCTTGTTGGGACGAACTTAAAATGCACTTTGAAATGAACCATCAATTGAATACACAAAGTCAGTGCCAAATATGCGGGACAATTATACCAGTGATTGAATTAAAAAAGCACATAAAGGATTTGCATTCGGCAAAACTACATGAATGTGACTATTGTAAGTTCCAAACATCGAACAAGACGAGCATGACACAACACATGTTGAGACATCAAAATGCAAAGACATTTCATTGTGATTTTAGTGGATGTAAATACAAAAGTTTTTACGAAGGAGCCATGTTAAAACATAAGAGAAAGCATGTCGAGTTGGGTGTCAAGTTACAATGTAGTAAATGCCCATTTCAAACTATGAATAAATATATATTGAAATACCATGAAGAGGCACATACGACTGGCAAAAAGAGATACAGCTGTGATCAATGTGATTACGCCACAATATTACCAGCTAACTTAGTACAACATAAATATAAGCATTCTAAGGAAAAACGGTTTAAGTGTGAAGTATGTCCCTTCGCTACAAAGTACAATACCTCGTTGAGGTTTCATGTGAAGAAGAAACACTGTGATTTACCAAGCTTCAATTAA
- Protein Sequence
- MVSIKRKIDLKIKVEKINNEFNTRKDPTTFLPEEPMSYEIKEKKKKKKKKKIEDPFKDIDVKIPYPTPIEIESVKLDPEVSIKVENIEVELDFNDFANNSGLMLEGPQSEDSQEPAVRLEEHNKEAVLLTFESIVNKANDTVLGYTPDAPLASDTLHVCKVCHLVFQSTKTLQTHQKRKHKVYRKSFKHICDYCGMAYEMKNSLVAHMKRKHAPGATEDDNLERTCDICALVFKGISRLRMHMRRKHGSFQESFKHVCRDCGLTYDKYRSLIVHIQRKHTNVKKPITNQWFNCPFCAKVFSRRETYARHVQRNHKVSDDDASRDAEVVEKLESCRNEQTGEITCKECPLVFSSMNFLKLHMRRKHNALKEDFRLKCKICNLSYNKIESLKRHVRRKHDKGSHCEVCNKQFDTKESYLNHSHVKVIKECTICGLIFASQGGLAKHLRCTHKIDSPKIVFCNICNQGFHDKRQLKPHLLKVHLKVSYTCMYCSKVFKAKESYRRHVLFQHPMKNVFRTEMQRCDHCTEMFPDENELCRHINTAHGVNSDEKSELICVKKEDGDIKDLFQCTQCPEVYSCWDELKMHFEMNHQLNTQSQCQICGTIIPVIELKKHIKDLHSAKLHECDYCKFQTSNKTSMTQHMLRHQNAKTFHCDFSGCKYKSFYEGAMLKHKRKHVELGVKLQCSKCPFQTMNKYILKYHEEAHTTGKKRYSCDQCDYATILPANLVQHKYKHSKEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081833;
- 90% Identity
- -
- 80% Identity
- -