Nnit033082.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374644.1:7345130-7347811[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.3 33 6.1 0.2 3 23 27 48 26 48 0.95 2 20 5.4 6e+02 2.1 0.6 2 23 121 142 120 142 0.92 3 20 0.00067 0.073 14.4 0.2 1 23 146 169 146 169 0.96 4 20 0.0096 1.1 10.8 1.9 1 22 173 194 173 194 0.96 5 20 0.0015 0.16 13.3 1.7 1 23 201 224 201 224 0.93 6 20 2.4e-05 0.0026 19.0 3.7 1 23 231 254 231 254 0.96 7 20 0.051 5.6 8.5 0.6 3 23 261 281 259 281 0.93 8 20 0.00022 0.024 15.9 0.7 1 20 287 306 287 309 0.95 9 20 0.44 49 5.6 0.7 3 23 363 384 362 384 0.97 10 20 4 4.4e+02 2.5 0.1 2 23 409 431 408 431 0.89 11 20 0.00012 0.013 16.8 0.7 1 23 454 476 454 476 0.98 12 20 5.8e-05 0.0064 17.8 1.9 1 21 480 500 480 501 0.96 13 20 0.032 3.5 9.1 1.2 1 23 542 565 542 565 0.96 14 20 0.51 56 5.4 0.4 2 23 591 613 590 613 0.95 15 20 0.014 1.5 10.3 1.0 2 23 637 658 636 658 0.95 16 20 0.00021 0.024 16.0 0.0 1 23 662 685 662 685 0.97 17 20 0.25 28 6.3 0.5 1 23 689 712 689 712 0.97 18 20 4 4.4e+02 2.5 0.7 1 23 717 742 717 742 0.83 19 20 0.00022 0.024 15.9 2.5 1 23 751 774 751 774 0.97 20 20 0.00022 0.024 16.0 0.3 1 23 784 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAACGGAATGCTGAAGGTGTCTTGAAATATTCCACCGCATATCCATTCAGACTACAGGGAAATAAAATACTTTGTGTCTATTGCTGCGAATCGTATGAAGACCCTGCCGAGTACAGAGCACACATGGATAGCACTCACCAAAGTTTTACAGTGTCCACTGCTATGGCCCATTGTTACCGTCATAATGATTATCTTAAAGTCGATCTCACTGATCTCAAATGCAGACTGTGTTTCGAACCCCAAGATAACATAAACGACATGGCTAAACATATTTATGAATGGCATGATTGCAAAAACTTTGACCTAGATTATGATGTAGGAATGCAACCATATAAATTGGAAAGGGGGAACTGGGAATGTTGCCTTTGTAATATGAAACTGCCTTCGCTTGTCAAACTCGGTCGACATACGACTGCCCACTTTCAAAAGTATACGTGCGATATATGCGGGCGCAATTATAACGCCAACGAAGCACTCAAGTACCATGTCAAACTGTCACATTCGGGAAAGCATACTTGTAGGAAATGTTGGCAGGAATTCTCCAGTCCACACGAAAGAAAGGAACATATTAGGACCTCTAAGCAATGTTGGTGTTACTGTTGTCTCATTTGTGGCGAACGGTTCATGTCTTGGGAGAACAAACAGAAACATCAAATTGAATTCCACGGATGCTCCAAAAGAACATACGAATGTCCCGGCTGTGACAAAGTTTTTGACTCCAGGAAACATTTTTATAAACACTACAAACTTTTTCACACAGATGATAACATTGTTTGTTCTTGTTGCGGTCTTAAATTTGCAAATAAAAGGGAATTGGATGACCATAGGATTGTACATACAGGGGAAAAGGAATATAAATGTACTGTTTGCCTAAAAGCATTCTCTAGAGATAGATCTTTGAAACAACATATGTGGATTCACAGGTCCAGGGTGGAAATTCACGTTGGACGTAGTGAAAGTGACACTGAAACAAAAAAGAAAATAGTCCTAGTGTACCAGACGCCCCAGCGGCGCAACGCCGAATTGATACTAAAATTTTCCACGGCCTATCCCTTTAAAACACGATTTAGTCAAATTCTTTGCGCATATTGCCACGAAGAATATGATACTCTAAATATTCTTCGGTATCATATGAAAAGCGAACATCTCAATTCTGATTTCAAAAATGTTTTTTATAGGACTAAAGATAATCTGGTCAAAGTAGATATTACTAATTTAAAATGCAAAATATGTTCTGCAGACATACACGATGTAGATGGTTTAATGGCACACCTATCTAACGAGCATAGCAAACCTGTTAAATTTAATGCCCGTTTCGGTGTATTACCATATAAGCAGAATGAAGATAGTAACTACGTTTGTGTATACTGTCAAAGAATTTTTGCAGATTTCATTAATTTTAAACGTCATATCAGTAGTCATTTCTTGAACTTTACTTGCGATAAATGTGGAACGACTTTTGTTTCAAATCATGCTCTGCGTGACCACCATCGTCAGGTTAAATGCTTTCGTACAGCTTATAAACCTCGTAATGGACCTGGTATGAAATCCAGAAGTAACGCTGAGATAATACTCCAATGTTCGACGGCATGTCCGTTCAGGACATGGAAGAACAATTTCAATTGTGTCTTCTGCCGCGTTCAGTGCAGCGACCCCAATGGACTTCGAAGTCACATGGCTACTTACCACGCTAACTACGACGTGCAAGCTGCCTTCTATAAAAAGTTAGGCAGCGAATTTCTAAAAATTGATATTACTAATTTACAATGTAAACTCTGCTTTATGCCTATTAACGATTTTGAATCTCTGACCTATCATTTGAAAAATGATCACCAGCAACGGATCAACACTGATGCTCAGTTAGGAGTTCTGCCATTCAGATTGAACGATGGTTCTATTTGGAAATGTACGATGTGTCCAAACGAATTCAAAGACTTTCTCTCCCTGAAAAAACACACTAGTGAACATTTCCAAAACTACGTCTGCGATACATGCGGCGAAGGTTTCATAACGGAATCTGCTATGATCGCTCACACGAAAATACCTCACGAAAACAAATACAGCTGTAGTCGATGCATAGCAACTTTTTCTTCCTTGGATGAGCGAAATATTCATGTCAAAACTCAGCACACCTCAATGCCTTATATGTGTAATTATTGTGCGGAAAAGCCTCGTTTTGCAAATTGGGAGTTACGGAAGAAACATCTAATGGAAGTTCATGATTACAAAACCGGAGCAGATAAATACGAATGCTCAACTTGCCAGAAATCCTTCAAGACACGATCTGGAAAATACAATCACATGGCGCGAACACACAGAATAAAAAAAGATTCGGAACTCAATTATCCTTGTCCTAGTTGCCCCAAGGCATTCACCACAAAACTTTTCTTGGATAAACATATTGCTAAGAAACACTTTGACACATGA
- Protein Sequence
- MEKRNAEGVLKYSTAYPFRLQGNKILCVYCCESYEDPAEYRAHMDSTHQSFTVSTAMAHCYRHNDYLKVDLTDLKCRLCFEPQDNINDMAKHIYEWHDCKNFDLDYDVGMQPYKLERGNWECCLCNMKLPSLVKLGRHTTAHFQKYTCDICGRNYNANEALKYHVKLSHSGKHTCRKCWQEFSSPHERKEHIRTSKQCWCYCCLICGERFMSWENKQKHQIEFHGCSKRTYECPGCDKVFDSRKHFYKHYKLFHTDDNIVCSCCGLKFANKRELDDHRIVHTGEKEYKCTVCLKAFSRDRSLKQHMWIHRSRVEIHVGRSESDTETKKKIVLVYQTPQRRNAELILKFSTAYPFKTRFSQILCAYCHEEYDTLNILRYHMKSEHLNSDFKNVFYRTKDNLVKVDITNLKCKICSADIHDVDGLMAHLSNEHSKPVKFNARFGVLPYKQNEDSNYVCVYCQRIFADFINFKRHISSHFLNFTCDKCGTTFVSNHALRDHHRQVKCFRTAYKPRNGPGMKSRSNAEIILQCSTACPFRTWKNNFNCVFCRVQCSDPNGLRSHMATYHANYDVQAAFYKKLGSEFLKIDITNLQCKLCFMPINDFESLTYHLKNDHQQRINTDAQLGVLPFRLNDGSIWKCTMCPNEFKDFLSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYSCSRCIATFSSLDERNIHVKTQHTSMPYMCNYCAEKPRFANWELRKKHLMEVHDYKTGADKYECSTCQKSFKTRSGKYNHMARTHRIKKDSELNYPCPSCPKAFTTKLFLDKHIAKKHFDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00279363;
- 90% Identity
- -
- 80% Identity
- -