Clem023819.1
Basic Information
- Insect
- Cataclysta lemnata
- Gene Symbol
- -
- Assembly
- GCA_963931975.1
- Location
- OZ008365.1:5348904-5352504[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.5 1.9e+02 3.3 0.4 3 23 44 65 43 65 0.91 2 19 5.1 3.9e+02 2.4 0.2 2 23 136 157 135 157 0.90 3 19 0.0001 0.0079 17.1 1.7 1 23 161 184 161 184 0.97 4 19 0.075 5.7 8.1 0.8 2 22 189 209 188 209 0.93 5 19 0.0079 0.61 11.2 3.5 1 23 216 239 216 239 0.90 6 19 4.2e-05 0.0032 18.4 4.7 1 23 246 269 246 269 0.98 7 19 0.011 0.86 10.7 1.7 1 23 274 296 274 296 0.96 8 19 0.0015 0.12 13.4 0.9 3 23 349 370 348 370 0.98 9 19 3.1 2.4e+02 3.0 0.0 2 23 395 417 394 417 0.89 10 19 0.0013 0.1 13.7 0.4 1 23 440 462 440 462 0.98 11 19 6.4e-05 0.0049 17.8 1.9 1 21 466 486 466 487 0.96 12 19 0.071 5.4 8.2 1.1 1 23 528 551 528 551 0.93 13 19 1.5 1.2e+02 4.0 0.1 2 23 577 599 576 599 0.93 14 19 0.0049 0.38 11.9 0.9 2 23 623 644 622 644 0.95 15 19 0.00024 0.018 16.0 0.0 1 23 648 671 648 671 0.97 16 19 0.37 28 5.9 0.5 1 23 675 698 675 698 0.97 17 19 4.4 3.4e+02 2.6 0.7 1 23 703 728 703 728 0.83 18 19 0.00024 0.019 16.0 2.5 1 23 737 760 737 760 0.97 19 19 0.00024 0.018 16.0 0.3 1 23 770 793 770 793 0.96
Sequence Information
- Coding Sequence
- ATGTGCCGGACGTTTCCAGaGTCGCCCAATCAAAACACGGCAGATTCCAATGTGGCGAGAGATAACGCTGCCGTTGTCTTGCTGTATTCCACCGCGTATCCGTTCCGACTGCAAGGCAATACGTTACTTTGCGTGTACTGCAGTGACCATTACCAAGATCCTGAATCGTTCAGAGCACACATGGACGATAGCCATGAAACTTTCAATGTGGCTACTGCATTCGCACACAGTCCCAGAGATTACCTCAAAGTCGACCTAACCAGTCTCAAGTGCAGAGTCTGTGATGAACCTCAAGACAACATAACCGATGTGGCTAAACATATTCACGAAAAACATGACTGCAAGAGCATCAATTTGGAATACGACATAGGCCTGCAACCGTACAAAATGCAGCGGGGTAACTGGGAATGCTGCATCTGCAATGCCAGACTACCCTCGCTTGTGAAGCTCGGCCGCCATACTGTCGCTCACTTTCAGAAGTACACTTGCGAGGTGTGCGGACGCTGCTACAACACGATGGAGTCCCTTAATTACCACGTTAGGCTCTCGCATTCGGGGAAGCTTGAGTGCAGGAAATGCTGGCAAGAATTCTCCAGTCCCGAAGAGAGGAAACACCATAGTAGGACCTCGAAGAAGTGCTGGACTTTCTGCTGCACCAAATGCGGCGAACGATTCATGTCCTGGGAACACAAGCAGAAACACCTCGTCGAGGTACACGGCGTCTCCAGGAAAATGTACGAGTGCACCGACTGTGACAAGGTGTATAGGAACCGTAAGGATTACTACAAGCACTACCGAGTGTGCCACACTGATGATAGCTTCGTTTGTTCGTGCTGTGGTCTCAAGTTTGCCAATAAGAAGAATTTGGACGATCACACGATCAGTCACACTGgGTCCACATTGGAAATTCACGTTGGACGTAGTGACACTGAaactaaaaagaaaatagtCCTTGTGTACCAGACACCCCAGCGGCGCAACGCCGAGCTCATACTCAAATTCTCTTCGGCGTACCCATTTAAAACTCGCTTCAGTCAAATACTTTGCGCGTACTGTCACGAGGAGTACGACACTCTGAACCTACTTCGGTATCACATGAGAACGGAACACCTAAATTCggactttaaaaatgtgttctATAGGACGAAAGATAATCTGGTGAAGGTAGATATAACTAGTTTGAAATGCAAAATATGTTCGGCGGACATAGATGATGTGGACGCTCTGATGTCTCATCTGTCTGCGGAACACGGCAAACCGGTAAAATTCAACGCTCGTTTCGGCGTGCTACCCTATAAACAGAACGAGGACAACCATTACGTTTGCGTGTATTGCCAGAGAGTGCTAGCagattttatcaatttcaaacGTCACATCAGCAGTCACTTTCTGAATTTCACGTGCGATAAGTGCGGCACCACCTTCGTTTCCAATCACGCTCTGCGCGACCATCACCGTCAGGTTAAGTGCTTGCGCACGGCGTACAAGCCGCGTAATGGACCTGGTATGAAGTCCAGGAGCAATGCGGAGATAATACTCCAGTGCTCCACCGCTTGTCCCTTCCGAACGTGGAAGAATAATTTCAACTGCGTCTTCTGCCGAGTTCAGTGTAGCGACCCTAATAGTCTGAGAAGCCATATGGCCGCTTACCACGCGAACTACGACGTGCAAGCCGCGTTTTACAAGAAGCTTGGGAACGAATTCCTCAAAATCGACATAACCAATTTGCAATGCAAGCTTTGCTTTGTGCCTATCAACGATTTTGACACCCTCACTGATCACTTGATCAATGATCACCAACAGCAAATCAATACAGACGCCCAGTTAGGTGTCTTACCGTTCAGGTTAAACGATGGCTCCGTATGGAAGTGCACCATTTGTCCGAACGAGTTTAAAGACTTTTTCTCGCTGAAAACGCACACGAGTGAACATTTCCAAAACTACGTCTGCGATACGTGCGGCGAAGGCTTCATAACCGAGTCTGCGATGATCGCTCACACGAAAATACCCCACGAAAATAAGTACAACTGCAGTCGGTGCATAGCGACGTTCTCTTCCTTGGACGAGAGGAATGTGCATGTCAAAACCCAGCATACGTCAATGCCGTACATGTGCAACTACTGCGCTGAGAAGCCGCGCTTTGCTAACTGGGAGCTACGCAAGAAGCATCTGATGGAGGTGCACGATTTCAAGACAGGAGCGGACAAGTATGAATGCTCCACGTGCCAGAAATCGTTCAAGACTCGCTCCGGGAAGTACAATCACATGGCTCGAACGCACAGAATCAAAAAAGACTCGGAACTCAATTATCCTTGCCCTAGCTGTCCTAAGGCGTTTACCACGAAACTTTTCCTGGACAAACACATTGCTAAGAAACATTTTGACGTTTGA
- Protein Sequence
- MCRTFPESPNQNTADSNVARDNAAVVLLYSTAYPFRLQGNTLLCVYCSDHYQDPESFRAHMDDSHETFNVATAFAHSPRDYLKVDLTSLKCRVCDEPQDNITDVAKHIHEKHDCKSINLEYDIGLQPYKMQRGNWECCICNARLPSLVKLGRHTVAHFQKYTCEVCGRCYNTMESLNYHVRLSHSGKLECRKCWQEFSSPEERKHHSRTSKKCWTFCCTKCGERFMSWEHKQKHLVEVHGVSRKMYECTDCDKVYRNRKDYYKHYRVCHTDDSFVCSCCGLKFANKKNLDDHTISHTGSTLEIHVGRSDTETKKKIVLVYQTPQRRNAELILKFSSAYPFKTRFSQILCAYCHEEYDTLNLLRYHMRTEHLNSDFKNVFYRTKDNLVKVDITSLKCKICSADIDDVDALMSHLSAEHGKPVKFNARFGVLPYKQNEDNHYVCVYCQRVLADFINFKRHISSHFLNFTCDKCGTTFVSNHALRDHHRQVKCLRTAYKPRNGPGMKSRSNAEIILQCSTACPFRTWKNNFNCVFCRVQCSDPNSLRSHMAAYHANYDVQAAFYKKLGNEFLKIDITNLQCKLCFVPINDFDTLTDHLINDHQQQINTDAQLGVLPFRLNDGSVWKCTICPNEFKDFFSLKTHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNVHVKTQHTSMPYMCNYCAEKPRFANWELRKKHLMEVHDFKTGADKYECSTCQKSFKTRSGKYNHMARTHRIKKDSELNYPCPSCPKAFTTKLFLDKHIAKKHFDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081823;
- 90% Identity
- -
- 80% Identity
- -