Nnit020200.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphula nitidulata
Gene Symbol
-
Assembly
GCA_947347705.1
Location
OX374620.1:4416073-4424801[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.00011 0.013 16.8 0.7 1 23 205 227 205 227 0.99
2 30 0.0015 0.16 13.4 1.1 3 20 259 276 259 278 0.95
3 30 1.3e-05 0.0014 19.8 0.5 3 23 308 329 306 329 0.96
4 30 0.0022 0.24 12.8 1.0 1 23 380 403 380 403 0.97
5 30 0.0061 0.67 11.4 0.2 1 23 424 446 424 446 0.96
6 30 0.0001 0.011 17.0 1.9 2 23 491 512 490 512 0.96
7 30 0.00018 0.02 16.2 2.0 2 23 553 575 553 575 0.97
8 30 9.6e-05 0.011 17.1 0.7 1 23 625 648 625 648 0.95
9 30 0.0025 0.28 12.6 0.2 1 23 708 730 708 730 0.97
10 30 0.0077 0.84 11.1 5.0 2 23 742 763 741 763 0.96
11 30 0.055 6 8.4 0.9 2 23 775 796 774 796 0.95
12 30 0.0054 0.6 11.6 1.5 1 23 806 828 806 828 0.98
13 30 0.26 28 6.3 6.2 1 23 857 879 857 879 0.97
14 30 5.9e-05 0.0065 17.7 2.4 1 23 890 912 890 912 0.98
15 30 3.2e-05 0.0035 18.6 0.4 1 23 920 942 920 942 0.98
16 30 0.001 0.11 13.8 0.3 2 23 962 984 961 984 0.97
17 30 0.12 13 7.3 0.8 1 23 1002 1024 1002 1024 0.97
18 30 0.16 17 7.0 4.1 1 23 1031 1053 1031 1053 0.98
19 30 0.0083 0.92 11.0 2.2 2 23 1064 1086 1063 1086 0.95
20 30 0.0018 0.2 13.1 0.2 2 23 1109 1130 1108 1130 0.95
21 30 0.44 48 5.6 0.3 2 20 1134 1152 1133 1153 0.92
22 30 9.3 1e+03 1.4 2.8 2 23 1173 1195 1172 1195 0.87
23 30 0.0099 1.1 10.7 0.1 2 23 1211 1232 1210 1232 0.94
24 30 7.1 7.7e+02 1.8 4.0 5 23 1242 1260 1239 1260 0.94
25 30 0.013 1.5 10.3 0.7 2 23 1271 1293 1270 1293 0.95
26 30 3 3.3e+02 2.9 6.8 2 23 1310 1328 1310 1328 0.88
27 30 2.2 2.4e+02 3.4 1.1 2 21 1332 1351 1332 1352 0.93
28 30 0.3 33 6.1 1.2 2 23 1401 1422 1400 1422 0.93
29 30 0.0031 0.34 12.3 0.8 2 23 1433 1455 1432 1455 0.96
30 30 0.065 7.1 8.2 1.7 2 21 1493 1512 1492 1513 0.93

Sequence Information

Coding Sequence
ATGGCCCTCAAACTGGGAAAATGCAGACTTTGTTTGAAGCTGGGGGACTTCTATTCCATATTCACGATCGACAATGCTCTTCAACTTGCCGAAATGGTTATGGAATGCGCCCGGGTAAAAGTATATGAAGGAGATGGGCTCCCTGACAAAATCTGTTCTGAGTGTATACAGAAGCTCAGCAGTGCATACATCTTCAAACAGCAATGTGAAAGATCTGATCAGGAATTACGTCGTAACTATGTTCCCCCACCAGGTTTCACAATTACTCCACCAGCCGTTCCAACCAATAGACAAAGCAGTGATTCTGCATTCTCAACGCACACTGACTTATCAAGTCAGACAAAGCCTTCATCTTCAAATGAAGGCATCACATCTCCGCCAAAAAGAAGCCGGAAACGCAGCCATGAGAGCATTGATAACACCTCAGTAAGTAGTCGGTCACACGAATTCGCACCCAGCACCAAACGAGTCTCGGAACTCAGAACCACAAAGAAACGGCAACGCACGCAGACGAGCAACAATTCTTTCATAGACTCTGATTACGATGATAATAGCATATCCCAATTTTCGGCTGCGGAGACAGACTCTGATGAACCATTGCTTAAAAGAGAATACAAGTGCACGGAATGTGACAAAATCTTTCAAAGCTTAAAAAGCCGCGCTGTACACATGAGAGTTCACTCTGCAAAAAACGATAAACTAACTGGAGATATAGTAGTCAATATTCCAAAGAATGTCACAAATGATGCAAATGATGACGACGACAAATTGGGCTGTGACAAATGCGGCAAAACTTTCAAATTGAAGATAATGTTGAAGAGACACCACGAAGTGTGCGGGAAAACACCCCAAACGTCCCCTCGAAAAGAACTGCTCATCTCTTTGGAGCCGATAGACGCAATATCACCAAAAAAAATCGACTGTGAAATGTGCACAACCAAATTTAAAACTATTGACAATCTACAAAAACATATGAGAGTAGTACACGCAGCAGTTCTTAAAAGGGACAGTTTTGAAAAGAATATACAGAATGGGAAAATGTCTGTACCTTGTATTTACTGCCGAAAACCATTTGACGATTATTACATTCATAGTGCACACTTTAATATATGCCCTGAAAAGATCGAAAGAGGTATGTTTGAATGTCCTGTGTGCCAAAAGATGACTTATAAAAAGAGTGCGTATTTTCTGCACATTAAGAACATGCATTTCGAACCCAGGAATGCCGATAATAAACCTGTAGTAGCATCGGAGCCCAAAGATGAGAAATTTCAATGCCGCATGTGCAGCAAACAGCTTGCGTCGCAGGAACAACTGATCACGCATCTCGCGGCGCACATGTCGAATATCGAGGAGCCTGATGAGGAGCCTGAAATAATAGCTGATGACGATTCCAGGGCAAGTACTATAGATGACTCGGCATCTGCCATTTCTGAATATAGCAGTACACATGTTTCCAGTGGACCTCTCAAATGCAGCATGTGTGATAAAAGATTCAAGTATAAGAAAGCCCTTGAAACTCACGAACTAAAACATTCAGAACTGAATATGAACATTAAAACTGAACCTCCAGATAAGATACAGTCGAATCTCTTACGCGAAACGAGTCGGCCGGATGTCGAAACGGAGTCTAGTCAAGAAGAAGGTGATGATAATACGTGTGATATATGCGAAAAACAGTTCTCTTATAAGCGCCTGCTTATACAACATAAACGCACCAAACACAATCAGTGTTCTGGCACGAAAAGAGCGAAAATCAACTTAAAAGATTGCTTTGTGCGGTGTTTGATATGTGATGTCGAAATGAAAGTGAGTACTGTCAATGAGCACAACCAAACACATATATCGGTTAACATTAAGCCAAGAAATTTATACAGTTGTGCTGAATGTGGAGAGCAATTTAAGAGCTGCAGCGCTCTGGCCAACCACATTAAGTTTGTTCATCGGCTCAAGCAGGCTCCGAGGCCGAAGAAGACGAAGATGCTGGAAGGTGGATCAGAGCTGGCGGATTTTTGTGAAGTCGTTGTGACAAAAGCGGAACCCCTGGAGCTAATCCAGAGTCACAACGACTTTGGCGAGGTTCCGGACGAGGCCGGCGCGCCGGTCGTGAACATGGCCGGGTTCACTTGTCCTATATGTCAGAAGAAAATGCCAACTCTCATTTCACTCAAGAGACATGTCAACTGGCACTCTAATGTTGGTAATAATATAGAGAAGAAGATTGAATGCTTTGTATGCCAAGAGTCGTTCCGCTTCCAATGCCACTACAAGCTGCACATGCGCGAGCACTACCGCGACCCCAACCTGGACCCGAAGCACCTGACCTGTCCCATCTGCAACCGCAAGAGCAAGCACCTACGAGCCGCCCTCGCCCACATGAACTTCCACAAGCAGACCCGCTTCAAGAGCAAGGACTACCAGTGCGCTATCTGCAAAAGGGTATTCCAACATCGAAAGGTATACTTGTCACACATGGCTATACATTTCAAACGAGGTGAAAGTGTCCAAAACACAATAGTCGGTGACGTGGTGCCTAATAATGTCGATAAAACTGCCTTTGACGGAACTCACACCTGCCAATTTTGTGGCAAAGTGTGCGACTCCGAAAACTCTTTGAAATGCCACATCAGGTGGCACAACTCGAAGTCCTCGCTGTACGGTGCGAGACACGAGTGCACTATGTGCGGACTGGTGTTCACCAATAAAAGGAGATTAGAACTTCATACAAGAACTCATTTTGAGGATGACAATGGTCCATACAAATGCCCTACCTGTGGCAAAGGGTACATTGACGAAGATTATTTCCGGAAACATGTCAAAGGTCATAACTTTGACAATCAGGTACACAAAGATAGAATAGACAAGTTAAGGAAAGATAAAGTGAAATGTCCTATTTGTACACGTTTCTACCCTGACTTGGTGCGGCTTATTAGACATTTGAGAAGGACCCACCCAGAAAGTAAAATGATCAAAACCGATCCCGACGCTCCGCCGCCTATCTACTATTCATGTAAACTGTGCGCCAAAATATTCCTGGACCAGCGGAGGCTGCAGAGACATGAGGAGTCTCATTTGAGGAAACCTCTATTCTTCAAATGCAAATTCTGTGGTAAGAATACTATTTCCCTCAAGAATCATAACTTACACATTAAATCACATTTGACACGAAATTACTTCGACAATCCATTAAAATGTACTCAATGTGATGAAATGTTTATAAAAGGCTATGACTTACATCATCACCTAAGGGATGTTCACAATACCAAAGAAACTTGGATAGCAGAGCGGACAGAGCAAACATTGGAGGGTCCGCTAAAGGAATTACAATGCTCCATTTGTCTGAAGGTATTGGCCAGTAAGGGCAACTTTGAAAGACACATTGACTATCATAACACATTGAGGTGTAACTATTGTTTCGTATTCTTCAGCACCCTAAGATTTTTAGAAGGCCACCTGGCATTCAGTTGCGATAAAAAGAAGTTGATAGGTGACACGGAGATATATCCCAAAAAGATCAAATGTGACGAATGCTACAAAGCTTTTCATATACAAGTGAAGTTAGATTGTCATTTGCGAATAAAACACAACATAAAAACATTTAAAGAGGCTTCTTCTAATAAAAAGGAGATTGTTTGCGATTACTGCTTTAGAGTGTTTGAAAACGAAGATGCATTAACTGGACACAAAATATATCACCGCACAATCGGCTACTATGGCTGCATTTATTGTAAACGAAAGTTTAACACACTCACTGTGTACAGAAAGCATAAGAATCACCACTTTTCACAGTTAAATGTGGATAATCCGTCGAAATGTGAACATTGCGATGAGACGTTTGTCGCCTTTAGAGAGATGATTTACCATATGAGGGATGTCCATGGCGATGACAAGGAGTGGATCATCATGCCCAAAGACTCCATAGAGGAGACTTGCCACATCTGCAACAAGACTTTCTTCAACCTCCACAAACATCTGACTTATCATGAAGAGAATAGATGCAAGAAATGTGCCGAGTACTTTTATTCCAGAGCAGATTTTGACAACCATTTATGCGCCATAGAAAGTGACGATGAAGAGTTGCAGGCCAACGGAAACAGTATCTTGCCAGCTTACGAGGAGTGCCGGTTCTGTTTCAAGCCGGTTACTAGATCTAATTCCAAGAAACTACACGACAACATCCACAGGACTTCCGGGGCGATATCCTGTCGGTTTTGTAAGCTTAAATTCAAAACAATGGATGCGTTTAACATCCACGCGTTTTCTCATAGAAGTAGGAAATACAACAAGCGGCCGATTAAGTGTCGAAAGTGTGGCGAGAAATTCGTTAAGTATGGGCCGTTCATGAAACACATGAAGTATGTTCACAAGAGTAATATAAAGGTTCATTACCGCGCGGTGGTGAGGCCGGAGCGTTGTGTGGTTTGCGGCGACGAGTTCCCCAACCTGCACAACCACTACCGCGCTCACCTTCTAAACCAGTGCCAGCTCTGTGGCAAGTACTTCACCTCGGCCAAGGTATTCTCACAGCACCAGTGTGACAAAGAAGATACGGACCCTACTAAAGTGTTTGTGAGTGACGAAAATCTCCAAGTTCTAATCAACTCATATGTACCTTTGGACCTGAAGGACGATGAGAAATTTTACGGGGAAGATGAAGCTGAAGAGGAGGAGGAGGAAACTGTTGCGCTGACAAACGGTCTCGAACCGAAGGGTGACATCAGTAAGACTGGTGAACCATCTGTGACTATAAATTTGGCAGAGAAAGACAAACTGAGTCAGGATGAGAAAGACTTGCATTTAATGGTTTCATCTCCGATAATATCGGACGTGTTGTCTCTTTATCAACAAAATGAAGATAAGAAACAAATTGTGGATGATAAAGATATCGTGACCTTGACAGATGACGATGACTCTATGGACATCGATGTCAGCATACCGGTTATTACGATTGATTAA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTIDNALQLAEMVMECARVKVYEGDGLPDKICSECIQKLSSAYIFKQQCERSDQELRRNYVPPPGFTITPPAVPTNRQSSDSAFSTHTDLSSQTKPSSSNEGITSPPKRSRKRSHESIDNTSVSSRSHEFAPSTKRVSELRTTKKRQRTQTSNNSFIDSDYDDNSISQFSAAETDSDEPLLKREYKCTECDKIFQSLKSRAVHMRVHSAKNDKLTGDIVVNIPKNVTNDANDDDDKLGCDKCGKTFKLKIMLKRHHEVCGKTPQTSPRKELLISLEPIDAISPKKIDCEMCTTKFKTIDNLQKHMRVVHAAVLKRDSFEKNIQNGKMSVPCIYCRKPFDDYYIHSAHFNICPEKIERGMFECPVCQKMTYKKSAYFLHIKNMHFEPRNADNKPVVASEPKDEKFQCRMCSKQLASQEQLITHLAAHMSNIEEPDEEPEIIADDDSRASTIDDSASAISEYSSTHVSSGPLKCSMCDKRFKYKKALETHELKHSELNMNIKTEPPDKIQSNLLRETSRPDVETESSQEEGDDNTCDICEKQFSYKRLLIQHKRTKHNQCSGTKRAKINLKDCFVRCLICDVEMKVSTVNEHNQTHISVNIKPRNLYSCAECGEQFKSCSALANHIKFVHRLKQAPRPKKTKMLEGGSELADFCEVVVTKAEPLELIQSHNDFGEVPDEAGAPVVNMAGFTCPICQKKMPTLISLKRHVNWHSNVGNNIEKKIECFVCQESFRFQCHYKLHMREHYRDPNLDPKHLTCPICNRKSKHLRAALAHMNFHKQTRFKSKDYQCAICKRVFQHRKVYLSHMAIHFKRGESVQNTIVGDVVPNNVDKTAFDGTHTCQFCGKVCDSENSLKCHIRWHNSKSSLYGARHECTMCGLVFTNKRRLELHTRTHFEDDNGPYKCPTCGKGYIDEDYFRKHVKGHNFDNQVHKDRIDKLRKDKVKCPICTRFYPDLVRLIRHLRRTHPESKMIKTDPDAPPPIYYSCKLCAKIFLDQRRLQRHEESHLRKPLFFKCKFCGKNTISLKNHNLHIKSHLTRNYFDNPLKCTQCDEMFIKGYDLHHHLRDVHNTKETWIAERTEQTLEGPLKELQCSICLKVLASKGNFERHIDYHNTLRCNYCFVFFSTLRFLEGHLAFSCDKKKLIGDTEIYPKKIKCDECYKAFHIQVKLDCHLRIKHNIKTFKEASSNKKEIVCDYCFRVFENEDALTGHKIYHRTIGYYGCIYCKRKFNTLTVYRKHKNHHFSQLNVDNPSKCEHCDETFVAFREMIYHMRDVHGDDKEWIIMPKDSIEETCHICNKTFFNLHKHLTYHEENRCKKCAEYFYSRADFDNHLCAIESDDEELQANGNSILPAYEECRFCFKPVTRSNSKKLHDNIHRTSGAISCRFCKLKFKTMDAFNIHAFSHRSRKYNKRPIKCRKCGEKFVKYGPFMKHMKYVHKSNIKVHYRAVVRPERCVVCGDEFPNLHNHYRAHLLNQCQLCGKYFTSAKVFSQHQCDKEDTDPTKVFVSDENLQVLINSYVPLDLKDDEKFYGEDEAEEEEEETVALTNGLEPKGDISKTGEPSVTINLAEKDKLSQDEKDLHLMVSSPIISDVLSLYQQNEDKKQIVDDKDIVTLTDDDDSMDIDVSIPVITID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00279324;
90% Identity
iTF_00006459;
80% Identity
-