Basic Information

Insect: Nymphula nitidulata
Gene Symbol: -
Assembly: GCA_947347705.1
Location: OX374644.1:6185646-6192085[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 34 0.0052 0.57 11.6 1.4 1 23 42 64 42 64 0.98

2 34 0.23 25 6.4 2.8 1 23 101 124 101 124 0.94

3 34 3.9 4.3e+02 2.6 0.0 2 23 150 172 149 172 0.91

4 34 0.067 7.4 8.1 0.6 1 23 194 216 194 217 0.93

5 34 0.29 32 6.1 0.8 1 23 263 285 263 285 0.97

6 34 0.044 4.9 8.7 0.2 2 23 313 335 312 335 0.96

7 34 8 8.7e+02 1.6 3.8 2 23 356 378 355 378 0.94

8 34 5.6e-06 0.00062 21.0 4.5 1 23 383 405 383 406 0.96

9 34 0.0007 0.077 14.4 0.5 1 23 410 433 410 433 0.95

10 34 0.38 42 5.8 0.5 2 23 436 458 435 458 0.94

11 34 0.79 87 4.7 0.1 2 19 465 482 464 485 0.93

12 34 0.0037 0.4 12.1 1.4 1 23 537 560 537 560 0.94

13 34 2.2 2.4e+02 3.4 0.0 2 23 589 611 588 611 0.94

14 34 0.0024 0.26 12.7 0.5 1 23 633 656 633 656 0.97

15 34 0.00043 0.048 15.0 0.2 3 23 663 684 662 684 0.93

16 34 0.0035 0.38 12.2 2.1 1 23 689 712 689 712 0.92

17 34 0.00016 0.018 16.4 0.6 2 23 718 740 718 740 0.95

18 34 3.4e-05 0.0037 18.5 4.4 1 23 744 767 744 767 0.97

19 34 0.19 21 6.7 1.5 2 23 774 795 773 795 0.96

20 34 0.1 11 7.6 2.4 1 23 834 856 834 856 0.94

21 34 0.049 5.4 8.6 0.0 2 23 884 906 883 906 0.90

22 34 0.01 1.1 10.7 0.3 2 23 927 949 926 949 0.94

23 34 0.00056 0.061 14.7 1.3 1 21 954 974 954 977 0.95

24 34 0.00043 0.047 15.0 2.3 1 23 982 1005 982 1005 0.97

25 34 0.00084 0.093 14.1 0.6 2 23 1008 1030 1008 1030 0.95

26 34 0.094 10 7.7 2.5 2 21 1037 1056 1036 1057 0.93

27 34 0.0066 0.73 11.3 1.5 1 23 1113 1136 1113 1136 0.90

28 34 1.7 1.9e+02 3.7 0.0 2 23 1209 1232 1208 1232 0.93

29 34 3.9e-05 0.0043 18.3 0.2 3 23 1239 1260 1238 1260 0.95

30 34 0.02 2.2 9.8 5.7 2 23 1265 1287 1264 1287 0.94

31 34 0.023 2.5 9.6 3.4 1 23 1292 1315 1292 1315 0.97

32 34 1.2e-05 0.0013 19.9 4.2 1 23 1319 1342 1319 1342 0.97

33 34 0.0015 0.17 13.3 0.5 2 23 1349 1370 1348 1370 0.96

34 34 1.3e-05 0.0014 19.9 1.7 1 23 1376 1398 1376 1398 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	34	0.0052	0.57	11.6	1.4	1	23	42	64	42	64	0.98
2	34	0.23	25	6.4	2.8	1	23	101	124	101	124	0.94
3	34	3.9	4.3e+02	2.6	0.0	2	23	150	172	149	172	0.91
4	34	0.067	7.4	8.1	0.6	1	23	194	216	194	217	0.93
5	34	0.29	32	6.1	0.8	1	23	263	285	263	285	0.97
6	34	0.044	4.9	8.7	0.2	2	23	313	335	312	335	0.96
7	34	8	8.7e+02	1.6	3.8	2	23	356	378	355	378	0.94
8	34	5.6e-06	0.00062	21.0	4.5	1	23	383	405	383	406	0.96
9	34	0.0007	0.077	14.4	0.5	1	23	410	433	410	433	0.95
10	34	0.38	42	5.8	0.5	2	23	436	458	435	458	0.94
11	34	0.79	87	4.7	0.1	2	19	465	482	464	485	0.93
12	34	0.0037	0.4	12.1	1.4	1	23	537	560	537	560	0.94
13	34	2.2	2.4e+02	3.4	0.0	2	23	589	611	588	611	0.94
14	34	0.0024	0.26	12.7	0.5	1	23	633	656	633	656	0.97
15	34	0.00043	0.048	15.0	0.2	3	23	663	684	662	684	0.93
16	34	0.0035	0.38	12.2	2.1	1	23	689	712	689	712	0.92
17	34	0.00016	0.018	16.4	0.6	2	23	718	740	718	740	0.95
18	34	3.4e-05	0.0037	18.5	4.4	1	23	744	767	744	767	0.97
19	34	0.19	21	6.7	1.5	2	23	774	795	773	795	0.96
20	34	0.1	11	7.6	2.4	1	23	834	856	834	856	0.94
21	34	0.049	5.4	8.6	0.0	2	23	884	906	883	906	0.90
22	34	0.01	1.1	10.7	0.3	2	23	927	949	926	949	0.94
23	34	0.00056	0.061	14.7	1.3	1	21	954	974	954	977	0.95
24	34	0.00043	0.047	15.0	2.3	1	23	982	1005	982	1005	0.97
25	34	0.00084	0.093	14.1	0.6	2	23	1008	1030	1008	1030	0.95
26	34	0.094	10	7.7	2.5	2	21	1037	1056	1036	1057	0.93
27	34	0.0066	0.73	11.3	1.5	1	23	1113	1136	1113	1136	0.90
28	34	1.7	1.9e+02	3.7	0.0	2	23	1209	1232	1208	1232	0.93
29	34	3.9e-05	0.0043	18.3	0.2	3	23	1239	1260	1238	1260	0.95
30	34	0.02	2.2	9.8	5.7	2	23	1265	1287	1264	1287	0.94
31	34	0.023	2.5	9.6	3.4	1	23	1292	1315	1292	1315	0.97
32	34	1.2e-05	0.0013	19.9	4.2	1	23	1319	1342	1319	1342	0.97
33	34	0.0015	0.17	13.3	0.5	2	23	1349	1370	1348	1370	0.96
34	34	1.3e-05	0.0014	19.9	1.7	1	23	1376	1398	1376	1398	0.98

Sequence Information

Coding Sequence: ATGCGAAATGTGAAAGAAGAAAAAGAGCCGACAAAAGGGCACAAGGCTAATAGGATCTTAAGGAGCAACCTGCAAATTATATTGAACAACACGTCGTTGGTGCCGTTCAAATGGCGCGGGAAATACATGTGCTTTTACTGTGGAAGAGACCTTGAGAATTACGAGGAGATGAAGCGGCACACTAAATCACACAGTGCGTCATTAGAAAAAGATAGATGTCTAAAGCTGATCAAGGGACATGACACTGAAGTGAAATTTGATGTCTCTGACGCGATGCCTTTCAGATACAGCTGGAATAAATTTAGATGCTTTTTCTGCTCAGAAGAATTTGTTGAATGCGATGATCTAAAACAACACTCGATATCAAAACACCCATCATGCAACGAAGATGAGTTGAAATGGATGAGACCAAAAAACTACCAGCTGAAGTTGGATATATCCTCGCTAAATTGCAAAGTTTGCTATGAACCTTTACAAGACATTGACAGTTTGGTTAATCATATAATAGCAGAACATAAAACAAATTACGACAAGTCTGTGAAATTCAACGTTCTTGCCTATAAACTTATCAATGATGAATTCCCTTGCCTTATATGTAACGAAACTTTTGAAGCGTTTGGGGATCTACTAAAACACAGTAGCCAACACCATAGAAAGAGTGAGACCATTTGCATGCATTATGAAAATGGGCCGGCAAAAGGTCAACATGCTAGTAGAAAACGGAGGAGAAATCTGCAAATTTTGTTCAACAACACTTCAATGATACCTTTTAAATGGCGCGGGAAATTTATGTGCTTTTACTGCGGCGACGACATTGATGATTATACGGAGCTTAGAAAGCACACAAAATCACATGGCGTTTGCTCCGACAGAGATAGAGCTATCAAGTTGGTCAAGTCTCGGGATTCCGAAGTTAAAATAGACGTATCAGACATTACATGCGAACTGTGCAATGAAGGGTTTACCTACTTCGATGATATTGTTACCCACTTGTCTACGAAACATCAGCTGCCTTACGACAGAGACGCAGATATCACCATAACCACATATAGACTGCTAGACCTCAAGTGCGTATTTTGCGAGGATAGCTGTAATAATTTTAGCAGACTCGTAAAACACATGAACCACGCTCACCCTATAAATTGTTTCGTGTGCCATGATTGTGATCGGAAATTCAACAAGAAGCGAGATCTCGAATCTCATATCCGTATACATCATAGAAAGGAGTATAATTGTAAAAAGTGCTCATTAAATTTTCCCAATAACGCAGCTTTGCAGAAACACAAGGCACGTGCTCACATATCAATGTGCAACATATGTTTTGAACCTTTCCCCTCTGATAGTAAAAAATTGGATCACATGAAACAAACGCATTTTGGTAAAGACGTACTAGAATGTGGTTTTTGTCAGAAAAAACTCAGCACAAAGTTAGCTCTTTTGAATCACGCCGGCAAATGTAACGTTCAGCAGTATAAAAACGACATATACGAAGTTGAACCCGAACCTGATAATAGCGACAAAAAACCTACTGTATCTGAAATAAGAAGCAATATCGCTTGCATTGTTAACATGTCGACAGCTTTGCCTTTCAAATATTTCATGAACAAATTCCGCTGTTTCTACTGTCCAAAAGATTTCATTGAGTGCGATGACCTTAAAGAACACACCGTTATGGAACACCCATCTTGTAATAGTAAACTAAAATGCCTTAGGCTTAGAAATAGGGAGCATGGTATTAAAATTAAAATAGATATATCGTATCTCTCCTGCAAGATGTGTTTTGAACCGATGCAAGACTTGGATGCCTTGATAAACCATCTGATAACTGAGCACAAAGCTCAATATGATAAGTCTGTAGATAATAATATGCAACCTTTCAAATTGATTAGGGATAACTTCGCTTGTCCGTTTTGCGTTGAAGTCTATAGGTATTTCAGTACACTTCTTAAACATATTAGCACAAGTCACACGGAAAACAGGAACATTTGTTCGTATTGTGGTATGTCGTTCAGAACGGATCCCAGCTTAAGAGCGCATATAACATTGCGGCATAAGCCAAATGGTCACAAATGTAATGCTTGTGAGAAAGACTTTACCACAAGACACGCGTTACGCGATCACTTGGGTAATGCACACGGCAGTAAAGTAGCCAAATGCCAGGTCTGCTCGGAGAGATTCACATCTCAATACGCGATGCAACGGCATATGATCAACGTCCACGCTACGGGCCACAAGTGCTCTTACTGCGGGAAAATGTTCACGAAGAACTCCTTCATGGTCAATCACATTCGCCGAACACATTTAAAGGAAAAGAACGTACAATGTTCCGTATGTTTCGAAAGATTCTTTGACGTGCACCTTTTGAGAATGCATACAGTAAAACATGTCGATGAAAATGCGCCGGCGCCTTACGAAGGATGCGCCTCTGAGCGCAGAAGGAAAAACTTGAAAATACTATTCAACAATACAACGGTGCTGCCATTCAAATGGCGCGGCAGATTCCTTTGTTTCTACTGCCCTAAAATCTGTACCGAATACCTGGAGTTAAAAAAACATACGATTTCGCATGGCTGGTGTACCACAAAAGATTATTCCTTAAGAGTAATAAAAGGAAACCATATCGAGATAAAGGTTGATGTATCAGAAATATCCTGCGATATCTGCAACGAGCCTTTCAGTGATTTAAACGAGATTATAGACCATTTGATCGGGAAACATAACTTGGAATACGATAAAACTGTTAACATACCATTTCAGACTTACAGGCTAATGGATTTAAGCTGTTTATTCTGTGATGAGAAGTTTTCTTACTTTGGTTACTTGATCAACCATGTGAACATATCTCATCCACAGAACTGCTTCATATGTGACGATTGTGGAGTCACTTTTAATAAGAAAAGAGACTTGGCCGTTCACTTAAGATGCTACCACAAGGATGGTGGTTACCCGTGCGATCAATGCGTCAAACACTTTGATAATTTCTATTTACTGCGCAGGCATCAAAACAGTGTGCATTTTAGGAAGTGTAAAAATTGTAATTTGCGTTTTGTATCCTTAGGGTTGCTGCAAAAACACATATCTTTAGAGCATCCGGAAGACGGCAGTTTAAAATGCGAGTACTGCGCCAAACAATGTCGCTCTTCGCAGGGTTTAAAACAGCACAGAAGTAAATGTAGAGTCAAATTCATAGTTACTACAGACGAACCTATGGACAAGCATTTTCCAATGGATAATGATTCGGAACCTAAAAGAAAGCAAAACGTTAAACAAATCAGACAAAACATTCAATGCGTTCTAAATATGTCTACGGCTGTCCCTTTTAAGTTCTTCTCAAAGTTTTCTTGCTTCTATTGCTCAAAAAAATTTGTCGAGTTCGATGATCTTAAGAATCATACAGTTTTGGAGCATCCGGTGTGCGATTTGAAATCAAAATCCATGCGAAAATGTAAAGGGGAAAGGATTTCCATAAAAATTGATATAACTTCCTTAAATTGTAAGGGTTGCTGTCAAAAAATGGACTCCTTAGATATGTTAATAGACCACTTAATATCAGAGCATAAGGCTGATTACGATAAAACTATTCTAGGCTGTTTGGAACCGTTTAAAATAGTAAAAGACAACATACCTTGCCCTCTATGCCCGGACCGCGCATTCCGATACTTCGGCATTCTCCTCCGTCACATGAATTCTGAGCATAGTAACAATAATAGGATCTGTGATTTCTGCGGTCGCAGTTTCAAAAACGTCGCCAACTTAAACGTTCACATCAACTACACACACATCGGCTCCTGTGAATGTAATATTTGCGGAGTTAAGTATAAAAACCAGTGGTGTCTAGCGAGGCACAGAGCGAAATGCCACAACGCCAAAGATTACAAATGCCCTAAATGCCCTGACAAGTTCCAATCTCAGTACCATAAGCAAAAGCACTTGATAAAAGTGCACAATATAGGTCACAAGTGTGAACAATGCGGTAAGATGTTTACACGAAACTCGTTTATGAAGGATCATATTAGACGGACGCATTTGAAGGAAAAAAACGTCTCATGCTCCGTATGTAGTGAGAAGTTCTTTGATAATTACCTGCTGAGGATGCATATGGTGAAACACGAGGGAGAAAGGCGATTCAGCTGCAGTATTTGCGGGAAGGCTTTCTTGAGACGTAGCAATCTTCATTCGCATATGGAAATGCATAAAAAATACGGGCATGTAGTTGGATTGTTACATGATATGATAAATTAA
Protein Sequence: MRNVKEEKEPTKGHKANRILRSNLQIILNNTSLVPFKWRGKYMCFYCGRDLENYEEMKRHTKSHSASLEKDRCLKLIKGHDTEVKFDVSDAMPFRYSWNKFRCFFCSEEFVECDDLKQHSISKHPSCNEDELKWMRPKNYQLKLDISSLNCKVCYEPLQDIDSLVNHIIAEHKTNYDKSVKFNVLAYKLINDEFPCLICNETFEAFGDLLKHSSQHHRKSETICMHYENGPAKGQHASRKRRRNLQILFNNTSMIPFKWRGKFMCFYCGDDIDDYTELRKHTKSHGVCSDRDRAIKLVKSRDSEVKIDVSDITCELCNEGFTYFDDIVTHLSTKHQLPYDRDADITITTYRLLDLKCVFCEDSCNNFSRLVKHMNHAHPINCFVCHDCDRKFNKKRDLESHIRIHHRKEYNCKKCSLNFPNNAALQKHKARAHISMCNICFEPFPSDSKKLDHMKQTHFGKDVLECGFCQKKLSTKLALLNHAGKCNVQQYKNDIYEVEPEPDNSDKKPTVSEIRSNIACIVNMSTALPFKYFMNKFRCFYCPKDFIECDDLKEHTVMEHPSCNSKLKCLRLRNREHGIKIKIDISYLSCKMCFEPMQDLDALINHLITEHKAQYDKSVDNNMQPFKLIRDNFACPFCVEVYRYFSTLLKHISTSHTENRNICSYCGMSFRTDPSLRAHITLRHKPNGHKCNACEKDFTTRHALRDHLGNAHGSKVAKCQVCSERFTSQYAMQRHMINVHATGHKCSYCGKMFTKNSFMVNHIRRTHLKEKNVQCSVCFERFFDVHLLRMHTVKHVDENAPAPYEGCASERRRKNLKILFNNTTVLPFKWRGRFLCFYCPKICTEYLELKKHTISHGWCTTKDYSLRVIKGNHIEIKVDVSEISCDICNEPFSDLNEIIDHLIGKHNLEYDKTVNIPFQTYRLMDLSCLFCDEKFSYFGYLINHVNISHPQNCFICDDCGVTFNKKRDLAVHLRCYHKDGGYPCDQCVKHFDNFYLLRRHQNSVHFRKCKNCNLRFVSLGLLQKHISLEHPEDGSLKCEYCAKQCRSSQGLKQHRSKCRVKFIVTTDEPMDKHFPMDNDSEPKRKQNVKQIRQNIQCVLNMSTAVPFKFFSKFSCFYCSKKFVEFDDLKNHTVLEHPVCDLKSKSMRKCKGERISIKIDITSLNCKGCCQKMDSLDMLIDHLISEHKADYDKTILGCLEPFKIVKDNIPCPLCPDRAFRYFGILLRHMNSEHSNNNRICDFCGRSFKNVANLNVHINYTHIGSCECNICGVKYKNQWCLARHRAKCHNAKDYKCPKCPDKFQSQYHKQKHLIKVHNIGHKCEQCGKMFTRNSFMKDHIRRTHLKEKNVSCSVCSEKFFDNYLLRMHMVKHEGERRFSCSICGKAFLRRSNLHSHMEMHKKYGHVVGLLHDMIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00006449;
90% Identity: -
80% Identity: -