Nnit028372.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374645.1:2445242-2447611[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.6e-06 0.00029 22.0 4.1 1 23 8 31 8 31 0.95 2 21 0.00033 0.036 15.4 0.2 2 23 37 59 36 59 0.94 3 21 1.7e-05 0.0018 19.5 0.2 2 23 68 90 68 90 0.97 4 21 5e-05 0.0055 18.0 1.2 2 23 99 121 98 121 0.94 5 21 0.00038 0.042 15.2 0.8 2 23 129 151 129 151 0.94 6 21 1.6e-06 0.00018 22.7 2.3 2 23 160 182 159 182 0.96 7 21 9.3e-08 1e-05 26.6 1.0 1 23 188 211 188 211 0.98 8 21 0.00013 0.015 16.6 0.4 1 23 219 242 219 242 0.93 9 21 9.9e-05 0.011 17.0 0.8 1 23 263 286 263 286 0.98 10 21 0.00035 0.039 15.3 0.5 1 23 313 336 313 336 0.98 11 21 0.19 21 6.7 0.9 2 21 344 363 343 364 0.94 12 21 0.015 1.6 10.2 2.2 2 23 373 395 373 395 0.95 13 21 0.013 1.4 10.4 5.0 1 23 416 439 416 439 0.96 14 21 2.5e-05 0.0028 18.9 0.5 2 23 446 468 445 468 0.96 15 21 2.8e-05 0.0031 18.8 2.2 2 23 475 497 474 497 0.94 16 21 0.00025 0.028 15.8 2.2 1 23 503 526 503 526 0.98 17 21 0.17 18 6.9 7.1 2 23 534 556 534 556 0.95 18 21 9e-05 0.0099 17.2 0.1 1 23 563 586 563 586 0.98 19 21 0.079 8.6 7.9 3.6 1 22 593 614 593 616 0.88 20 21 0.02 2.2 9.8 2.2 5 23 633 652 630 652 0.89 21 21 3.1 3.4e+02 2.9 0.5 1 15 702 716 702 719 0.85
Sequence Information
- Coding Sequence
- ATGTATCAGAGTTTCTTAGACTACGTTTGCGACTATTGCAGTCGCACGTTCACCAGGAAGTACAATCTCCAGACACACATAGAGAATTGTCATTTGAATTCTACATGCTATTGTGAAATTTGTGACCAAACTTTTGGAAGTCCAGCTGGCTTGCAACTTCACTTAGAGAGAGGCCACAACAGGTTTGGACAACCATACCCCGAGTGCGATCTCTGTGGTAGAGTGTTTACAAGGAAACAGAATATTGTATCGCATATGATCACTGTACATTTTCAAGGCTTAGGCCCGGAGATACGCTGTGATATGTGTTATAAAACTTTTACTACTGACAGAAATTTGAAGAGACATGTAAATCAAGTCCACAATCCTAATATTCAGTACCCAACATGTGACAGCTGCAATAAAGTGTTTAAAGCGAAACACTCCCTAATAGCCCATATACAAGCTATGCATAATTACGCGGAGAAGGATATAATAAGATGTCACCTATGTGACAAAGTCTACACGAACAACAGAAATCTTAAAAGACACATTGAAATGTTTCACGGTGAAAAGGGGGAGTTCAGATGCGAAATTTGCCCTAAGGTGTACACATCCAATCAGAGTTTAAGGCGACATATCCGAACGACTCACTATTCTGACGATGCTGATGTATATAACTGTGATTACTGCGATAAAACTATATCGGGAAAAGAAAACTTAGAAGCGCATATATCTTTTTTTCACAGACCTGATACAAATTCTCCGGATAACAGTGACGTTACATCATGGAATAAGGTTCTTGAGTACTCCTGTGAATCGTGCTCCAAGTCATTTGAGGAAGAAAGCTTCCTCCGACAGCATATCAAAACGGGGCACTCTTTTAAAACATTTTACAAATACTGCAAGAAATATTTAATGAAACAAGTAAATAAATATGAAAAGAGGAATAACAGTTATCGTTGCGAATTTTGTCTTAACGCTTTTAGTAGCGTTTATGAGTTAAAAGATCATATGAGGGTTAATCACGATAGAGAGTATTGTCTATCCACGTGCAATGTATGCTTCAACAAGTTTTACAGCAAAGAAACTATGACTGAACATAGGAAGGTATGTCTGCCACCAGAAAATGTAAATTCTTGCAGCCATTGCGACAAATTATTTACTGATGTATCAAGTCTCGAGTTTCATACAAGAATCTTTCATCCTCAATCTCAAATAGCTGATTCTAACATATCATCCACCAACATTGAAGACCTTGAGAATTATAAATGCGCCCATTGCGACCGCATCTATTACAGTGACAGGTCTTTGAAGCATCACGTTAAACTAAAACACACTACAGATGAGGCAATGGAGTGTGCATACTGCGGAAAGATCTGCAGCAACAAATATTACCTCGCATCTCACATTAAAATAGTCCACAATAATGATTCCTGGTCAAAATGTGACTATTGCGATAAACAATTTAAATCTAAAAGAAACATCCGGCGGCACATAGAATACACCCATTTAGGAATGCAAAGATACAAGTGTGTTGAATGTGAAACTTTATTCAAAGAGAAGAGGAGTCTGCGTAAGCATGTCAGGACGAAGCATCCGAATTCGGTTGCCTTCCCGCAATGTCATATTTGCCATAAACGTTTTGAATCTGCGAAATCATGTAAAATACATTTAAAGCTGCTTCATTCATTCAACATGAACACATACCCTTGCGATTTGTGTTCTGTATCTTTTAGTTCCAATGAAGCATTGTCTATACACCTACAAACTAAACATTTGGCTGAAGATGAAATATATAAATGCGAGGAGTGTAACCTTGTATTTAAAGGACAAGGGAAATTTGATCACCACAACGAATTATGCCATGTGAATTTGGTTCCACATTTAAAGCAGAAGGTGTTGCCGCGCTGTATCATATGCATAAAGGATTTCAGCACAAGAAAAACGTTGAAACGACATATTAAAAAGTTCCACGAAGACTTTGACGTTGATGAATTAGCTAACTTCGGCTCTAGAAACCGAGTTTTCAACGTCGAATGTGAAGATTGCATCAGAAATTTGGACGACGATTTCCATTATAGTGTTTATCAGACTGTGAAGCATTTGAAAGATTCTATAATCTTTAAATGCGAAACTTGTTCGGCGACTTACAATTCCTTGGAGTATTTTGTACAGCGACAGCGACATAAAATGACGAATTCTAGCAAAGGCAAAATGATACTGAGCGAACTATGTACTGCGGAAATGAGCGGTGATGAAGCTTCTTACACAGGGTTCGGGTCCTTGCATGAAATGATGGAACCGGAAAGTACTACAAATGATATTATAAAAGTGGAACCTCCTGATGATACAATAGATGATATTAAAATGGAACCAATGTCTCCGTAG
- Protein Sequence
- MYQSFLDYVCDYCSRTFTRKYNLQTHIENCHLNSTCYCEICDQTFGSPAGLQLHLERGHNRFGQPYPECDLCGRVFTRKQNIVSHMITVHFQGLGPEIRCDMCYKTFTTDRNLKRHVNQVHNPNIQYPTCDSCNKVFKAKHSLIAHIQAMHNYAEKDIIRCHLCDKVYTNNRNLKRHIEMFHGEKGEFRCEICPKVYTSNQSLRRHIRTTHYSDDADVYNCDYCDKTISGKENLEAHISFFHRPDTNSPDNSDVTSWNKVLEYSCESCSKSFEEESFLRQHIKTGHSFKTFYKYCKKYLMKQVNKYEKRNNSYRCEFCLNAFSSVYELKDHMRVNHDREYCLSTCNVCFNKFYSKETMTEHRKVCLPPENVNSCSHCDKLFTDVSSLEFHTRIFHPQSQIADSNISSTNIEDLENYKCAHCDRIYYSDRSLKHHVKLKHTTDEAMECAYCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHPNSVAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAEDEIYKCEECNLVFKGQGKFDHHNELCHVNLVPHLKQKVLPRCIICIKDFSTRKTLKRHIKKFHEDFDVDELANFGSRNRVFNVECEDCIRNLDDDFHYSVYQTVKHLKDSIIFKCETCSATYNSLEYFVQRQRHKMTNSSKGKMILSELCTAEMSGDEASYTGFGSLHEMMEPESTTNDIIKVEPPDDTIDDIKMEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006443;
- 90% Identity
- iTF_01081787;
- 80% Identity
- iTF_01081787;