Nnit028372.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374645.1:2445242-2447611[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0052 7 7.6 1.5 18 43 9 31 7 32 0.94 2 20 1.8 2.4e+03 -0.5 0.2 18 43 37 59 33 60 0.74 3 20 0.0055 7.5 7.6 0.0 18 43 68 90 67 91 0.91 4 20 0.0026 3.5 8.6 0.3 17 44 98 122 96 122 0.94 5 20 0.0057 7.7 7.5 0.4 18 44 129 152 126 152 0.93 6 20 0.00018 0.24 12.3 1.2 15 43 157 182 154 183 0.89 7 20 0.00049 0.67 10.9 0.4 17 43 188 211 184 212 0.90 8 20 0.0014 2 9.4 0.0 17 43 219 242 213 243 0.82 9 20 0.94 1.3e+03 0.4 0.1 19 44 265 287 260 287 0.79 10 20 0.021 29 5.7 1.3 11 43 307 336 293 337 0.90 11 20 5.1 7e+03 -2.0 0.4 18 29 344 355 343 361 0.76 12 20 0.2 2.7e+02 2.6 0.1 14 27 369 382 365 396 0.81 13 20 0.087 1.2e+02 3.7 3.3 13 43 412 439 405 440 0.84 14 20 0.22 2.9e+02 2.4 8.3 4 29 432 457 429 469 0.76 15 20 0.0025 3.4 8.7 2.4 12 43 469 497 460 498 0.78 16 20 0.15 2e+02 3.0 0.6 18 44 504 527 499 527 0.75 17 20 0.59 8e+02 1.1 1.0 18 28 534 544 531 557 0.82 18 20 1 1.4e+03 0.3 0.1 19 43 565 586 560 587 0.73 19 20 0.0018 2.4 9.1 2.9 6 43 616 652 612 653 0.76 20 20 2.1 2.9e+03 -0.7 0.2 14 28 699 713 690 715 0.80
Sequence Information
- Coding Sequence
- ATGTATCAGAGTTTCTTAGACTACGTTTGCGACTATTGCAGTCGCACGTTCACCAGGAAGTACAATCTCCAGACACACATAGAGAATTGTCATTTGAATTCTACATGCTATTGTGAAATTTGTGACCAAACTTTTGGAAGTCCAGCTGGCTTGCAACTTCACTTAGAGAGAGGCCACAACAGGTTTGGACAACCATACCCCGAGTGCGATCTCTGTGGTAGAGTGTTTACAAGGAAACAGAATATTGTATCGCATATGATCACTGTACATTTTCAAGGCTTAGGCCCGGAGATACGCTGTGATATGTGTTATAAAACTTTTACTACTGACAGAAATTTGAAGAGACATGTAAATCAAGTCCACAATCCTAATATTCAGTACCCAACATGTGACAGCTGCAATAAAGTGTTTAAAGCGAAACACTCCCTAATAGCCCATATACAAGCTATGCATAATTACGCGGAGAAGGATATAATAAGATGTCACCTATGTGACAAAGTCTACACGAACAACAGAAATCTTAAAAGACACATTGAAATGTTTCACGGTGAAAAGGGGGAGTTCAGATGCGAAATTTGCCCTAAGGTGTACACATCCAATCAGAGTTTAAGGCGACATATCCGAACGACTCACTATTCTGACGATGCTGATGTATATAACTGTGATTACTGCGATAAAACTATATCGGGAAAAGAAAACTTAGAAGCGCATATATCTTTTTTTCACAGACCTGATACAAATTCTCCGGATAACAGTGACGTTACATCATGGAATAAGGTTCTTGAGTACTCCTGTGAATCGTGCTCCAAGTCATTTGAGGAAGAAAGCTTCCTCCGACAGCATATCAAAACGGGGCACTCTTTTAAAACATTTTACAAATACTGCAAGAAATATTTAATGAAACAAGTAAATAAATATGAAAAGAGGAATAACAGTTATCGTTGCGAATTTTGTCTTAACGCTTTTAGTAGCGTTTATGAGTTAAAAGATCATATGAGGGTTAATCACGATAGAGAGTATTGTCTATCCACGTGCAATGTATGCTTCAACAAGTTTTACAGCAAAGAAACTATGACTGAACATAGGAAGGTATGTCTGCCACCAGAAAATGTAAATTCTTGCAGCCATTGCGACAAATTATTTACTGATGTATCAAGTCTCGAGTTTCATACAAGAATCTTTCATCCTCAATCTCAAATAGCTGATTCTAACATATCATCCACCAACATTGAAGACCTTGAGAATTATAAATGCGCCCATTGCGACCGCATCTATTACAGTGACAGGTCTTTGAAGCATCACGTTAAACTAAAACACACTACAGATGAGGCAATGGAGTGTGCATACTGCGGAAAGATCTGCAGCAACAAATATTACCTCGCATCTCACATTAAAATAGTCCACAATAATGATTCCTGGTCAAAATGTGACTATTGCGATAAACAATTTAAATCTAAAAGAAACATCCGGCGGCACATAGAATACACCCATTTAGGAATGCAAAGATACAAGTGTGTTGAATGTGAAACTTTATTCAAAGAGAAGAGGAGTCTGCGTAAGCATGTCAGGACGAAGCATCCGAATTCGGTTGCCTTCCCGCAATGTCATATTTGCCATAAACGTTTTGAATCTGCGAAATCATGTAAAATACATTTAAAGCTGCTTCATTCATTCAACATGAACACATACCCTTGCGATTTGTGTTCTGTATCTTTTAGTTCCAATGAAGCATTGTCTATACACCTACAAACTAAACATTTGGCTGAAGATGAAATATATAAATGCGAGGAGTGTAACCTTGTATTTAAAGGACAAGGGAAATTTGATCACCACAACGAATTATGCCATGTGAATTTGGTTCCACATTTAAAGCAGAAGGTGTTGCCGCGCTGTATCATATGCATAAAGGATTTCAGCACAAGAAAAACGTTGAAACGACATATTAAAAAGTTCCACGAAGACTTTGACGTTGATGAATTAGCTAACTTCGGCTCTAGAAACCGAGTTTTCAACGTCGAATGTGAAGATTGCATCAGAAATTTGGACGACGATTTCCATTATAGTGTTTATCAGACTGTGAAGCATTTGAAAGATTCTATAATCTTTAAATGCGAAACTTGTTCGGCGACTTACAATTCCTTGGAGTATTTTGTACAGCGACAGCGACATAAAATGACGAATTCTAGCAAAGGCAAAATGATACTGAGCGAACTATGTACTGCGGAAATGAGCGGTGATGAAGCTTCTTACACAGGGTTCGGGTCCTTGCATGAAATGATGGAACCGGAAAGTACTACAAATGATATTATAAAAGTGGAACCTCCTGATGATACAATAGATGATATTAAAATGGAACCAATGTCTCCGTAG
- Protein Sequence
- MYQSFLDYVCDYCSRTFTRKYNLQTHIENCHLNSTCYCEICDQTFGSPAGLQLHLERGHNRFGQPYPECDLCGRVFTRKQNIVSHMITVHFQGLGPEIRCDMCYKTFTTDRNLKRHVNQVHNPNIQYPTCDSCNKVFKAKHSLIAHIQAMHNYAEKDIIRCHLCDKVYTNNRNLKRHIEMFHGEKGEFRCEICPKVYTSNQSLRRHIRTTHYSDDADVYNCDYCDKTISGKENLEAHISFFHRPDTNSPDNSDVTSWNKVLEYSCESCSKSFEEESFLRQHIKTGHSFKTFYKYCKKYLMKQVNKYEKRNNSYRCEFCLNAFSSVYELKDHMRVNHDREYCLSTCNVCFNKFYSKETMTEHRKVCLPPENVNSCSHCDKLFTDVSSLEFHTRIFHPQSQIADSNISSTNIEDLENYKCAHCDRIYYSDRSLKHHVKLKHTTDEAMECAYCGKICSNKYYLASHIKIVHNNDSWSKCDYCDKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHPNSVAFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFSSNEALSIHLQTKHLAEDEIYKCEECNLVFKGQGKFDHHNELCHVNLVPHLKQKVLPRCIICIKDFSTRKTLKRHIKKFHEDFDVDELANFGSRNRVFNVECEDCIRNLDDDFHYSVYQTVKHLKDSIIFKCETCSATYNSLEYFVQRQRHKMTNSSKGKMILSELCTAEMSGDEASYTGFGSLHEMMEPESTTNDIIKVEPPDDTIDDIKMEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00006443;
- 90% Identity
- iTF_01081792;
- 80% Identity
- iTF_01081792;