Nnit021056.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- Hr39
- Assembly
- GCA_947347705.1
- Location
- OX374620.1:21053364-21071529[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.42 4.7e+03 -2.5 0.7 92 136 144 189 51 240 0.46 2 4 2.1 2.4e+04 -4.8 7.6 82 172 228 317 164 363 0.52 3 4 9e-08 0.001 19.5 0.1 1 20 442 461 442 470 0.91 4 4 5.5e-65 6.2e-61 207.9 0.0 164 408 504 760 473 760 0.84
Sequence Information
- Coding Sequence
- ATGAGCGCAATGACGAGCGAGGGAGATCCGGTGAAGGTGGAAGGGGTTCACGTCTCAGTTACCACTATCAGCATGTCTGGCTCTGAAACCAATAACGTACAATTCTCGTACAGCTCGAGCGGAGTCCGTATCAGCGTGTCTTCGGACCCTCACGACGAAGACTCCACTGATGCGGAGATCTCTAAAATAGACTTCACACAACATCAAAATGAGGTAAACATGAGAAATAAGAAAAAGCGGCCGTCGAGTGGCGCGCAGTATGACACGTTGCCAAACGACCGGGAGCGGCCGATGTCCTGGGAAGGAGAGCTGTCTGACTCGGAGATGGTGATAGACACGAGCGTAAACAATGACGAAAACAGTAATTCACTAGACCTGCAGTCCTCTAGAGACTCTATCGATACTCTTCGCAATGTGACCATCAAGTCAGAACCGATCAAGACCGAGTCATACCAGAGTGTCGACGACCAGCGGGTTCTGGATCTCAAGTACCAGATACCTTTGCAGCAGCACCAAAGGAGCCTCAGCATGAATAGGATATCGGTGTTAACAGACAACACTACGCTCTCGCTCGCTCGACGGCCTTCCTCTCCAAACACATCGTTAGTCTTGAAGGACCAGAACAGTGTTCCCATAATGCCACAGACTTCTCTAGGGGAGGTCCAGAATTTAACGATCAAGAAGGAGACGCAGTTATCAGAGCTGAAGTGCGAGCCAACAGTGGGCATGGATAAACTGTTGGGCGCTCTCCACGGATCGCCACTCCTCGGCAGGCTACCGAGGGTCCAGTCCAGTGCCAGTACAGACTCCGCAGTGCATTCCATGTATACACACAGCGTGTACAGCAGCCCGTCGGCCAGTCCGCGAGCGTCGCGGCACTACACGCCGTCTTTGTCCCGTAACAACAGCGACGCGTCCCACTCGTCCTGCTACTCGTACAGCTCGGAATTCTCGCCTACCCACTCCCCTGTACAGGGTCGTCACCCACATGTGGTATACCGCGAGGCAGCGCCAGTGTTCCCAGCGTCACCGGCGCATGACGATGACGCTGAGCCCACGGATGATAGGCTGCATCACCACCAAGGGATCAGTCGGCAACAGCTCATCAACAGTCCATGTCCAATATGCGGGGACAAAATCAGCGGCTTCCACTACGGCATATTCTCCTGCGAGTCCTGCAAAGGTTTCTTCAAGCGGACCGTTCAGAACCGGAAAAACTACATGTGCCTTCGGGGCGGCAACTGCCCAGTGACTGTGTCGACCAGAAAGAAGTGTCCGGCGTGCCGCTTTGACAAGTGCCTTGGATGTGGGATGAAGCTTGAAGCGATTCGCGAAGACCGGACTAGAGGCGGCCGGTCCACGTACCAGTGTTCGTACTCGCTGTCGGGCGCGGCGTCCACGGGCTCGCTGCTGTCCGCGCACGTGCCCACGACGCTGCGGCACGCCTCCAGTCTCACTTGTGTCAATGGTCCAGGGTCATACAACAGCCGAGGAGAGTCAAGTAACAGTCGACTGACGCCAGACATACCACAGTTATTGCAGGAGATAATGGAAGTGGAACATCTATGGCAATACAACGAATCCGAGTTGACCAGGCTAGGGAAATCCCCGGGGAGTCCCTCCGGGAACCCTTTACTAGCCGCCAGCGGAATCACTGCCCAGAACTCAAGTCCTGACTTCTTGGCCGACCTGTGCAATATAGCAGACCACCGCCTTTACAAGATCGTCAAGTGGTGTAAAAGCTTGCCTCTGTTTAAAAATATATCGATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTTCTGGTGCTGTCGTGCTGCTACCGCGGCGTGGGCACGCCCGGCGAGGTGCGCGTCGGCGGCGGCCGCGGCATCACCCTCGACCAGAGCGCCAAGCTTGGCTTGACGCCCTGTATAGAACGAATGCTAAGCTTCACCGACCATCTGAGGAGGCTTCGAGTGGACCGATACGAGTATGTCGCGTTGAAGGTCATCGTACTGCTCACATCAGACACGCCGGAACTCCGCGAGAGTGAGAAAGTGCGAGCGTCGCAAGAGAAAGCGCTCGCAGCGCTGCAGGCGTACACGGCGACGCACTCGCCCGACACGCCCGCCAAGTTCGGCGAGCTGCTGCTGCGGATCCCGGAGCTGCAGCGGACTTGCCAATTCTTCATGCAAGTTGGTAAAGAGATGCTCAACCCAGCGAACAAGAACAAAGACGGCGAAGGACCAAGCTTCAACTTGCTCATGGAGCTGCTCAGAGGCGACCATTGA
- Protein Sequence
- MSAMTSEGDPVKVEGVHVSVTTISMSGSETNNVQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFTQHQNEVNMRNKKKRPSSGAQYDTLPNDRERPMSWEGELSDSEMVIDTSVNNDENSNSLDLQSSRDSIDTLRNVTIKSEPIKTESYQSVDDQRVLDLKYQIPLQQHQRSLSMNRISVLTDNTTLSLARRPSSPNTSLVLKDQNSVPIMPQTSLGEVQNLTIKKETQLSELKCEPTVGMDKLLGALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRASRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREAAPVFPASPAHDDDAEPTDDRLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVSTRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAASTGSLLSAHVPTTLRHASSLTCVNGPGSYNSRGESSNSRLTPDIPQLLQEIMEVEHLWQYNESELTRLGKSPGSPSGNPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLDQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDTPELRESEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKNKDGEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00042698;
- 90% Identity
- iTF_00806824;
- 80% Identity
- iTF_01081695;