Nnit001813.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374625.1:14858556-14860257[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-08 4.3e-05 24.0 0.0 1 42 19 60 19 62 0.95 2 2 7.1 8.9e+03 -2.6 0.0 6 15 204 213 204 214 0.88
Sequence Information
- Coding Sequence
- atgcctcgtaaatataagcgaaaaccaggcgtggtgccgcgcaccatcaactggacagaagatagcttaatacttgccttggaagaattgagagagaaaaaaaaaggtattaatgaaatttctcgaacctacggaatatcctctcgaaccttaagaagacgttacgaaacaagtaaccagcaactacttactcaaggaaaatatcctgttcttggtttcaaaaatgaaaaaagactggtagctcatatattgaaactCGGAGACGCCGGTTTTCCGCCTGATAGAATTGTAATTCGCCAATTAGCTTATCAGTTTGCCGAGAAATTGGAGTTAAAACACAGCTTTAACAATGAGAATGAAATGGCTGGACCACAATGGCTGAAAAGCTTTCTTGAAAGAAATCCTGAAATAGCTTTGAGACAAGCTGAGGGTTTATCAATTGAAAGAGCGAAGGGTCTCAACAGAACAGAAGTTGCAAATTTTTTCACACTCTTAATAGATACTTTAACTAAGAATAATTTACTGGATAAGCCAGATAGAATATTTAATATGGATGAAACCGGTGTCCAGCTAAATAATAAAATTGGTAAAGTATTAGCGAAGAAAGGCGCTAAAGCAGTTAAATCAGTCACTTCCGGTGAAAAAGGAGAAACAATTACTGTTGTTGCCTGTTGCAATGCTATTGGAAATTTTCTCCCACCAGTTCTGATTATCAAAGGCGTAAAGAAGAAACCCGAATTCGAAGAGGGACTTCCGCTTGGTTCTCAAGTTTACATGCAAAAGAAATCGGCATACATTACCTCTGATCTTTTTTATAAATGGCTAACTGAACATTTTATCCCACGAAAACCATCAGGGAAGGTGTTACTGATTTTGGATGATCATTCATCGCACTCAAGTGCTGTCAACATGCTAGAAACTGCTCGTGATAATGATGTGATATTGCTTTGTTTACCTAGTCACACTACTTCAGCTTTGCAACCGTTAGATGTAGCAGTATTCGCACCATTTAAAAAATATTATAATGCTGAGACAAACAATTTCATGCGTACCAATCCACAAAAAAAACTGAATCGGTACAACTCGGGCCAGCTAATATCCAAGGCATGGATTCGAGCAGCTGTTCCCGCCAATGCAATAAGTGGTTTTCGTGGCAGTGGAATCTACCCAGTGGAACCAAATGCCCTATCAGGTGCTGAATTTGCTATATCAGATCTAGCGTTGGGGGAACTTGCGCTGGAACAAGAATCTAATTCTCTAGAAGATCAAgtaccaggagtttctggagtgtctgcgttaaagaaGTGCTCACAACATTCTGAGCAAAGTTTCGCGTTAAATGAAAGAGACCAAGTGTCATCCTTAAGCAAACAAGTACCAAGTATTTGTACCGTACCGGAATCTGAGTCTAATCAAGGTCTACATCATCGAAACGAACTGTTTCCATCAGGATATCAAGTTCCAAGTAATACTGATAATCTGGAAATTATTGTACATGAGTCTGAACAGAATAACGAGAACCAAAATCACACGACCGAGACCGCCTTCAAGCCTATTAAATTTGTCTCAAGATTGTTTAGCCTTAGAAGATTGCGACATTGA
- Protein Sequence
- MPRKYKRKPGVVPRTINWTEDSLILALEELREKKKGINEISRTYGISSRTLRRRYETSNQQLLTQGKYPVLGFKNEKRLVAHILKLGDAGFPPDRIVIRQLAYQFAEKLELKHSFNNENEMAGPQWLKSFLERNPEIALRQAEGLSIERAKGLNRTEVANFFTLLIDTLTKNNLLDKPDRIFNMDETGVQLNNKIGKVLAKKGAKAVKSVTSGEKGETITVVACCNAIGNFLPPVLIIKGVKKKPEFEEGLPLGSQVYMQKKSAYITSDLFYKWLTEHFIPRKPSGKVLLILDDHSSHSSAVNMLETARDNDVILLCLPSHTTSALQPLDVAVFAPFKKYYNAETNNFMRTNPQKKLNRYNSGQLISKAWIRAAVPANAISGFRGSGIYPVEPNALSGAEFAISDLALGELALEQESNSLEDQVPGVSGVSALKKCSQHSEQSFALNERDQVSSLSKQVPSICTVPESESNQGLHHRNELFPSGYQVPSNTDNLEIIVHESEQNNENQNHTTETAFKPIKFVSRLFSLRRLRH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01341197;
- 90% Identity
- iTF_00279060; iTF_01341197; iTF_01341199; iTF_01081536;
- 80% Identity
- -