Nnit024599.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374619.1:13262091-13263653[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-08 2.6e-05 24.7 0.0 4 43 16 55 13 56 0.91 2 2 3.3 4.1e+03 -1.5 0.0 32 41 150 159 148 161 0.82
Sequence Information
- Coding Sequence
- ATGTTATCTACGCAAAGAAAAAAAGAAAAACAATATGACCAAAGCACTCTCGAAGAAGCTGTATGGATGGTACACGCACAACAAATATCTTTATCGAAAGCCAGTGCTCAATTTAATATTCCAAAAGGTACGTTGCATAATAAAATTCATGGTAAAACTTCTCTGCAATGTAAAAAAGGTCCAAAAAAATTGTTATCAGATAACGAAGAACACAAAATTGCGACCTGGATTTTAAATATGGCTAAAATTGGCTATCCCGTTAATGCTAGCGATGTTAGGGAAACTGTTTCCCAAATTTTCGACATCAAAGGTGTGGATCTGAAGCCAGGAAAAAAGTGGATGAAACTATTTTTGCAAAGACATCCAAACATTACTAAACGACATGCCGAAGTTATATCTAAAGCAAGATCCTTAATCACTGAGCCAATGATTAGAAAATGGTTTCATACTTTGCATCGACACCTGCAAGAGGAAAATGCGGCGAATATATTGGATAGTCCTGAGCGTATTTTCAATTTAGATGAAACAGGTGTACAACTATGTCCAAAAACTGGAGTCATTTTGGCACCTAAAAACTATCGTGCTACGTACAATGTTGCCAGTGGACAGAAAAAGCAATGTATAACTGTATTGTGCAATTTTTCTGCTAGCGGTAAAATAGTTACACCTTTTATCGTATATCCATTACAAAGAATTTCCAAAGAAGTAGCACAATCAGTTCCAGATGAATGGGGAATAGGACGTTCGGAGTCTGGTTGGATGACAGGTGAAACGTTTTTGCACTACATCAAAGAAATTTTTGTACCTTGGCTCCAGAAGAATAATACTATATTTCCTGTACTGTTACTCGTTGATGGCCACAAAAGTCATATAAATTTAGAGTTGCACGAATTATGTGTTCAAAACCAAATTATACTATACTGCTTGTATCCAAATACGACACACATTTTACAGCCGTGCGATGTAGGAATTTTTGGCCCTCTAAAAGCAGCATGGAAAAATGTAGCAAGAAAACATAAAAACAAAGATAATGTTCAGATAACCAAGTCCAACTTTGCAAAAATATTTGCACAGGCCTTTGAAATATCTATGAAGAAAACTGTAATAGTTAACGCGTTCAAAGTTTGTGGAATTTTCCCCTTCAACCCCAATGCTGTAGATTATTCCAAATGCATCTCGAATAGACAAAAAGAAATAGAAAATGACATATCCTTAGATGATTATAAAACCACCATCGATGTAATAGAAAAAGTTTTACAGAATAATGTCCTGGCCAAGTACAAAGAATATAGAAGACTTAATAAAACATGTAAGAGTAGTCTTTTCAAATTTTGGAACAGATGCAAAAATAAAGTGGACAACCTCTTGCTGTCACAATCATCCAATATCGATGATTCTACAATTAACAGTTTGCGAGCAGATAATGCTGATACTGGCGTAAATGCAAGTAATACAGGAGAGATATCAAAGACCCAAGAACATGAAGACGAATTATCTATAATTCCTGACAGCTCTTTTGGGACCCTAGCCACAAGTACTTGTATCCTGTGCATTGGGATGTAA
- Protein Sequence
- MLSTQRKKEKQYDQSTLEEAVWMVHAQQISLSKASAQFNIPKGTLHNKIHGKTSLQCKKGPKKLLSDNEEHKIATWILNMAKIGYPVNASDVRETVSQIFDIKGVDLKPGKKWMKLFLQRHPNITKRHAEVISKARSLITEPMIRKWFHTLHRHLQEENAANILDSPERIFNLDETGVQLCPKTGVILAPKNYRATYNVASGQKKQCITVLCNFSASGKIVTPFIVYPLQRISKEVAQSVPDEWGIGRSESGWMTGETFLHYIKEIFVPWLQKNNTIFPVLLLVDGHKSHINLELHELCVQNQIILYCLYPNTTHILQPCDVGIFGPLKAAWKNVARKHKNKDNVQITKSNFAKIFAQAFEISMKKTVIVNAFKVCGIFPFNPNAVDYSKCISNRQKEIENDISLDDYKTTIDVIEKVLQNNVLAKYKEYRRLNKTCKSSLFKFWNRCKNKVDNLLLSQSSNIDDSTINSLRADNADTGVNASNTGEISKTQEHEDELSIIPDSSFGTLATSTCILCIGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081531;
- 90% Identity
- iTF_01081531;
- 80% Identity
- -