Nnit024108.1
Basic Information
- Insect
- Nymphula nitidulata
- Gene Symbol
- -
- Assembly
- GCA_947347705.1
- Location
- OX374619.1:7710831-7712291[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-08 2.3e-05 24.9 0.0 4 43 16 55 13 56 0.91 2 2 3.1 3.8e+03 -1.4 0.0 32 41 150 159 148 161 0.82
Sequence Information
- Coding Sequence
- ATGTTATCTACGCAAAGAAAAAAAGAAAAACAATATGACCAAAGCACTCTCGAAGAAGCTGTATGGATGGTACACGCACAACAAATATCTTTATCGAAAGCCAGTGCTCAATTTAATATTCCAAAAGGTACGTTGCATAATAAAATTCATGGTAAAACTTCTCTGCAATGTAAAAAAGGTCCAAAAAAATTGTTATCAGATAACGAAGAACACAAAATTGCGACCTGGATTTTAAATATGGCTAAAATTGGCTATCCCGTTAATGCTAGCGATGTTAGGGAAACTGTTTCCCAAATTTTCGACATCAAAGGTGTGGATCTGAAgccaggaaaaaagtggatgaaactatttttgcaaagacatccaaacattactaaacgacatgccgaagttatatctaaagcaagatccttaatcactgagccaatgattagaaaatggtttcatactttgcatcgacacctgcaagaggaaaatgcggcgaatatattggatagtcctgagcgtattttcaatttagatgaaacaggtgtacaactatgtccaaaaactggagtcattttggcacctaaaaactatcgtgctacgtacaatgttgccattggacagaaaaagcaatgtataactgtattgtgcaatttttctgctagcggtaaaatagttacaccttttatcgtatatccattacaaagaatttccaaagaagtagcacaatcagttccagatgaatggggaataggacgttcggagtctggttggatgacaggtgaaacgtttttgcactacatcaaagaaatttttgtaccttggctccagaagaataatactatatttcctgtactgttactcgttgatggccacaaaagtcatataaatttagagttgcacgaattatgtgttcaaaaccaaattatactatactgcttgtatccaaatacgacacacattttacagccatgcgatgtaggaatttttggccctctaaaagcagcatggaaaaaTGTAGCAAGAAAACATAAAAACAAAGATAATGTTCAGATAACCAAGTCCAACTTTGCAAAAATATTTGCACAGGCCTTTGAAATATCTATGAAGAAAACTGTAATAGTTAACGCGTTCAAAGTTTGTGGAATTTTCCCCTTCAACCCCAATGCTGTAGATTATTCCAAATGCATCTCGAATAGACAAAAAGAAATAGACAATGACATATCCTTAGATGATTATAAAACCACCATCGATGTAATAGAAAAAGTTTTACAGAATAATGTCCTGGCCAAGTACAAAGAATATAGAAGACTTAATAAAACATGTAAGAGTAGTCTTTTCAAATTTTGGAACAGATGCAAAAATAAAGTGGACAACCTCTTGCTGTCACAATCATCCAATATCGATAATTCTACAATTAACAGTTTGCGAGCAGATAATGCTGATACTGGCGTAAATGCAAGTAATACAGGATAG
- Protein Sequence
- MLSTQRKKEKQYDQSTLEEAVWMVHAQQISLSKASAQFNIPKGTLHNKIHGKTSLQCKKGPKKLLSDNEEHKIATWILNMAKIGYPVNASDVRETVSQIFDIKGVDLKPGKKWMKLFLQRHPNITKRHAEVISKARSLITEPMIRKWFHTLHRHLQEENAANILDSPERIFNLDETGVQLCPKTGVILAPKNYRATYNVAIGQKKQCITVLCNFSASGKIVTPFIVYPLQRISKEVAQSVPDEWGIGRSESGWMTGETFLHYIKEIFVPWLQKNNTIFPVLLLVDGHKSHINLELHELCVQNQIILYCLYPNTTHILQPCDVGIFGPLKAAWKNVARKHKNKDNVQITKSNFAKIFAQAFEISMKKTVIVNAFKVCGIFPFNPNAVDYSKCISNRQKEIDNDISLDDYKTTIDVIEKVLQNNVLAKYKEYRRLNKTCKSSLFKFWNRCKNKVDNLLLSQSSNIDNSTINSLRADNADTGVNASNTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01081532; iTF_01525907;
- 90% Identity
- iTF_01081532;
- 80% Identity
- -