Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989995.1:11889904-11892604[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.014 1.3 10.2 2.5 2 23 32 53 31 53 0.96

2 14 0.00022 0.02 15.9 2.9 1 23 91 114 91 114 0.98

3 14 6.8e-06 0.00063 20.7 1.7 1 23 116 138 116 138 0.98

4 14 0.0024 0.22 12.7 0.3 1 23 173 195 173 195 0.98

5 14 0.23 21 6.4 0.1 2 19 224 241 223 243 0.92

6 14 0.027 2.5 9.3 3.3 1 23 253 275 253 275 0.89

7 14 3.1e-05 0.0029 18.6 1.9 1 20 281 300 281 302 0.95

8 14 0.082 7.6 7.8 1.0 3 23 316 337 314 337 0.95

9 14 2.4e-05 0.0022 19.0 0.1 3 23 344 366 342 366 0.95

10 14 2.9 2.7e+02 2.9 1.4 3 23 373 393 373 393 0.96

11 14 0.029 2.7 9.3 0.2 1 20 398 417 398 420 0.92

12 14 0.00049 0.046 14.8 1.0 3 23 428 448 426 448 0.96

13 14 5.9e-06 0.00055 20.9 1.2 1 23 454 476 454 476 0.98

14 14 5.5e-06 0.00051 21.0 2.1 1 23 482 505 482 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.014	1.3	10.2	2.5	2	23	32	53	31	53	0.96
2	14	0.00022	0.02	15.9	2.9	1	23	91	114	91	114	0.98
3	14	6.8e-06	0.00063	20.7	1.7	1	23	116	138	116	138	0.98
4	14	0.0024	0.22	12.7	0.3	1	23	173	195	173	195	0.98
5	14	0.23	21	6.4	0.1	2	19	224	241	223	243	0.92
6	14	0.027	2.5	9.3	3.3	1	23	253	275	253	275	0.89
7	14	3.1e-05	0.0029	18.6	1.9	1	20	281	300	281	302	0.95
8	14	0.082	7.6	7.8	1.0	3	23	316	337	314	337	0.95
9	14	2.4e-05	0.0022	19.0	0.1	3	23	344	366	342	366	0.95
10	14	2.9	2.7e+02	2.9	1.4	3	23	373	393	373	393	0.96
11	14	0.029	2.7	9.3	0.2	1	20	398	417	398	420	0.92
12	14	0.00049	0.046	14.8	1.0	3	23	428	448	426	448	0.96
13	14	5.9e-06	0.00055	20.9	1.2	1	23	454	476	454	476	0.98
14	14	5.5e-06	0.00051	21.0	2.1	1	23	482	505	482	505	0.98

Sequence Information

Coding Sequence: ATGGCTTCACTCACCCATATGGACCCGGAGAGCTCAGGCTCAGCTTTATACCGGAGCCCTAAACCCACTACAATTGATTTAGTTGGAGGTATATACTGCCACATATGTCATATTACATATGCTAACAAAAAAGAATATGATTTACATTATATTAAACATGAAACTGGAAGTAAAGAAATAGTGTACACATGTGTGGTATGCCATAAGGAGATAGCTGGATATCCGAGTTTCCGCGGCCACTGTTACACAAGCCATGTCATAAAAGATAGATTCAAGTGTGAACATTGTTCAAAATTATTTTCGAAGTCTTTATCCCTCAAGGAACATATCAAAGTAATGCACAGATTTAAATGCTCATCATGTAATAAAGAATTTACAACAAAGAAAGAGCTTCAATTGCATCAAATAATTCATAATAATACAGATATGCCTCCCTTCAAATGCCAAGCTTGCGATAATCAAATTGATTCACTCGAAGGCTGTAAAGAACATATAGATTTGCACTCCGCTTCTATATACTTTTGTCCAGTTTGTAATGAGAATATATCAAGTCGAGATAATGCTAAGGAGCATTTGAAAAAACATTTTGGTGATGACAATGAAGATCAACCAATAATACACAAAAATTTTGATAAACAAGAAAGTTATATAGAACAGTTGGGCGGGATTTCGTGTAAATACTGTCCGCTTATTTACAAGGATAGAGTAGAGTTTGACGCTCATTTTTCTTGCGAACATGGTAATGAAGATATAGTCTATACATGTAACGTCTGTGGAAAGCATTTTGAAAAGTACTCTGTGTTCAGCGACCATTCCTATAACCATTTCATGAAGGATAGATTCTGCTGTGACATTTGTCATAAAACATTCAACCGCCTCTCCCTGCTGGTGACACACATGTCTGCCTGCCAAGCAAATATGGACGCCAATGGGAAGCCATTTGGGTGCTTCCAGTGCGGACACCGCTACGTCACCGAGATGCGTCTCCGTGAACATCTGCGAGACGCTCACGCTATCCATTGCATTATGTGTCCAGAGGAAGGCTGCCAAAAAATATTTTCCACACCAAAAGATTTGATAACCCATCAACGTGAGCACCGTTCGCAGCAGAATTGGTGTCGGCAGTGCGGTCTACTGTTCCCTACTTTGAAATCATGTGAACGTCACCTGGACGTTCACAAAAAGAAGCTCTATATCTGTCCAGTCTGCAATCGAAATTACAGTGAGAAATACCTTATACTGAAACATGTCCCGCAGCATTTTGAAACAGTTTTGCACCTCTGCAAAGTATGTGGAAAGGTCTACAACGCCAAGAATCGCCTCATAGAACACATAAAAACTCATTCTGAAAGCAAAAACCATAAATGCACCTACTGTGGAAAGGGTTTCGTGAAGATAGGTCAGTTACAGCAGCACCTGAACGTCCACACTGGATCCAAGCCGTACAAGTGTCCCATATGTTCGAAAACGTTCGCCAGCTATCCGAACTGGCACAAACATTTGCGCAGAATGCACAAAGTCGACGGTAAAAAGTACAAAAAGTGTACAGAAAACGTTCCGAATTTAATCGACGAGTCGGAATCGGACAGCACGGAGACCCTGGACGAGGAGGAGTCGCCTGCAGAAATCGACATCAACGAAATTAATATGAATCAATCGATCTTGGGAGTCGCTCCGGAACTGGACGGGAACTTGACCAACGCTCGCCTGCACGTCGACATCTCCGAGACGTACACGTTCCAGGAGCCGGAGGACAGCACTATGGAGCCGGACGACATTGATCGGATCATCATCGAGAAAGAGCTGGAAATCTTCGAGGACACGGCGAATTTGAAAAACATTGTAGAATTCATTAACGTGTTGCCGGCCGATATCGGCGGGTGCGGCCCGACGCCGGCGGCCGGTCCGGTCGCGCCGCCGGGCCCGGCCGCGCCGGTGGCGCCGGTCGTGCCGGCCGAGTACGGGCCGGAGTTCGCGGAGCCGGACGAGCACATGCTGCACATCGACCCGCTGCTGACCATCAAGCACGCGGGCCCGGGCTGGGAGCCGCTGCTGACGCGCGTGTTCCCCGACGTGCTGGAGTCTAGTCGTTTCTCGATGATGAACACCGATATATTTTAA
Protein Sequence: MASLTHMDPESSGSALYRSPKPTTIDLVGGIYCHICHITYANKKEYDLHYIKHETGSKEIVYTCVVCHKEIAGYPSFRGHCYTSHVIKDRFKCEHCSKLFSKSLSLKEHIKVMHRFKCSSCNKEFTTKKELQLHQIIHNNTDMPPFKCQACDNQIDSLEGCKEHIDLHSASIYFCPVCNENISSRDNAKEHLKKHFGDDNEDQPIIHKNFDKQESYIEQLGGISCKYCPLIYKDRVEFDAHFSCEHGNEDIVYTCNVCGKHFEKYSVFSDHSYNHFMKDRFCCDICHKTFNRLSLLVTHMSACQANMDANGKPFGCFQCGHRYVTEMRLREHLRDAHAIHCIMCPEEGCQKIFSTPKDLITHQREHRSQQNWCRQCGLLFPTLKSCERHLDVHKKKLYICPVCNRNYSEKYLILKHVPQHFETVLHLCKVCGKVYNAKNRLIEHIKTHSESKNHKCTYCGKGFVKIGQLQQHLNVHTGSKPYKCPICSKTFASYPNWHKHLRRMHKVDGKKYKKCTENVPNLIDESESDSTETLDEEESPAEIDINEINMNQSILGVAPELDGNLTNARLHVDISETYTFQEPEDSTMEPDDIDRIIIEKELEIFEDTANLKNIVEFINVLPADIGGCGPTPAAGPVAPPGPAAPVAPVVPAEYGPEFAEPDEHMLHIDPLLTIKHAGPGWEPLLTRVFPDVLESSRFSMMNTDIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00843750;
90% Identity: iTF_01078433;
80% Identity: -