Nurt018597.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990009.1:3242964-3247603[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.18 17 6.7 0.7 1 21 64 84 64 85 0.96 2 29 0.0075 0.7 11.1 0.6 2 23 157 178 156 178 0.97 3 29 0.018 1.7 9.9 0.1 1 23 182 204 182 204 0.95 4 29 1.5 1.4e+02 3.8 0.7 1 15 209 223 209 232 0.78 5 29 0.012 1.1 10.4 0.6 1 23 238 261 238 261 0.97 6 29 0.0021 0.2 12.8 1.2 1 23 268 291 268 291 0.98 7 29 0.00036 0.033 15.2 0.7 1 23 298 320 298 320 0.97 8 29 0.0027 0.25 12.5 0.1 1 23 394 417 394 417 0.97 9 29 1.1 99 4.3 2.0 3 23 445 466 443 466 0.93 10 29 6.3 5.8e+02 1.9 5.1 1 23 488 510 488 510 0.98 11 29 0.00015 0.014 16.4 0.5 1 23 514 536 514 536 0.97 12 29 0.0043 0.4 11.9 0.3 1 21 570 590 570 593 0.90 13 29 0.024 2.2 9.5 0.7 1 21 600 620 600 621 0.95 14 29 0.4 37 5.6 0.4 1 23 665 687 665 687 0.92 15 29 0.3 27 6.1 1.0 2 23 712 734 711 734 0.96 16 29 7.8e-06 0.00072 20.5 2.7 1 23 756 778 756 778 0.98 17 29 0.027 2.5 9.4 4.6 1 21 782 802 782 804 0.95 18 29 0.13 12 7.2 0.2 3 23 811 832 809 832 0.91 19 29 0.0027 0.25 12.5 4.5 1 23 838 861 838 861 0.96 20 29 8.3 7.7e+02 1.5 0.2 1 10 867 876 867 878 0.88 21 29 0.077 7.1 7.9 2.7 1 23 919 941 919 941 0.94 22 29 0.0063 0.58 11.3 3.3 3 23 1011 1031 1010 1031 0.98 23 29 0.0019 0.17 13.0 3.4 3 23 1037 1057 1036 1057 0.97 24 29 0.0064 0.59 11.3 2.3 1 23 1064 1087 1064 1087 0.97 25 29 6.8e-05 0.0063 17.5 2.4 1 23 1093 1116 1093 1116 0.97 26 29 0.013 1.2 10.4 0.7 1 23 1122 1145 1122 1145 0.97 27 29 0.00041 0.038 15.1 0.5 1 23 1151 1173 1151 1173 0.97 28 29 1.3e-06 0.00012 22.9 0.6 1 23 1179 1201 1179 1201 0.99 29 29 0.00016 0.015 16.4 5.1 1 23 1207 1229 1207 1230 0.96
Sequence Information
- Coding Sequence
- ATGGGAAATGAGGCCGCTTTAAAACTAGAATCGTCTGAAAGTTTTAATATAGAAGATCCGTTAAAAGTTACAGAGAAAAAACGTTATCAAAGAAGCGCAAGAGCCGAGGCAAGGCTGGTCACCAAGAAAAATGCGAGCGCCATACTCGAATGCTGGACTCTTTGTCCATTTAGATGGAAAAGAAATCGTTTTAAATGCGCCTACTGTGAGGATAATTTCATTGAATGTACAGAATTGAGAAGCCACATAAGACTTTGTTCGACTCAGCACTGCGTTAAAGACATATATAGCAAATTCAAGGAAATGTCACTTATAAATATTGATGTAACCGAAGCTACGTGTAGGATATGCGCCATGCCCTTTCAAGGGGTTAACGAAATGCGTAATCATGTAATCGATCACGGCTTTGACTTCGATACGTCTCACCCGGATGGCGTCCTACCGTTCTTCTTGGACAAGGAGGCGTGGAAATGTTTGATCTGTCGAGAGTCCTTCAACAATTTCCTAAAACTTTACGAGCACATGAATATCCATTATCAACATTATATTTGTGCTACATGCGGTAAAGGGTATATGACGGCACCACGTTTGCGGAAGCATTCGGAGGTTCATATAACTGGTACATTTCCGTGCGATAAATGTAGGCAAGTTTTTACGATGCGCGCTGCCCGAGATTATCATAAAGCTCACGCCCATGCTAAGGGTCCGCGCTATGAATGTCCACAGTGCAACATGAGATTTGAAGGCTATTATGAAAGAATGAATCATTTAAACAAAGAACATAGGGAAAAAGAAGTATTGTATAAATGTGCCCATTGCGAATTATCTTTCAAAACTAGTGGGAAAAGGGCGATACACGTGAGATCAGTACATTTTCCTCAACAGCGAAACTTTGCCTGTCCATTCTGTAAATGGTTATTTAAAACTGGATATGAATTAAAAAGGCATATGGTTAAACATACGGGTCCCGCTCTTGCGGATTCAGAGGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGAAACGACGACGACGGCGGGCAAACAACGAATTGCCAGAGGAATCCGAGAAAAGAATAGCGAAAACAATGATGCGTAGAAACGCAATGACGATTCTCGAATGTTCCACTGCTTGGGCCTTCCGTTGGTTCCAAAGCGCGTATTATTGCTCGTACTGCGATGTTAAATTCGTAGATCCATTACTTTTACGCGGTCACGTTGCCACGTTTCACATTGCCGATGCACCTACTAAGCGAATATTTTCAAAACTTACCGAAAATAATATGGTTAAGGTAGACGTATCTAATGTACATTGTAGGATTTGCAATTGTAGGATAGAAAGCATAGATTCTCTGAAAAAACACCTTATGGACGTTCATGATAAAACCCTAAATCATGATTACAACGATGGTATACTCCCTTTTAAACTCGATTCGAACGGTTTCGAATGCCAAATATGTTGCGCGAATTTTACAAGTTTTTGTAAAATCAATGAGCATATGAACACGCACTTTAAAAACTATATTTGCGATGCGTGCGGGAAGGCGTTTGTATCAAAATCACGGTTTAGAACGCATGTACAATCACACGAGACCGGTAGTTTCCCGTGTGGGATGTGTGATGAAATCTTAGAAACGAGGGTCGCTAGAATGTGTCACAGGTCGAAAGTTCATAAGAAAGGAGTGCGATACACATGCCCACGTTGCCCCGAAGTCTTTACAACTTACTACGCAAGATCGAAGCATTTGGTAGATGGACACGATCAACAGAAGCAGAAATACGAATGCTTCGCGTGCGGTAAATCTTTCGAAACGAGCTGTAAACGAGCAGCGCACATTCGCGATGGTGTCGCAAGGGAAATAACAGTAAAAATTGAATGGAAAAAAGCGCGAAGAGCTACGGAAGATAAAGCGAATGCCGCCTTGCTTCTCGAATGTTCGAATGCGGTGGCGTTTAGGTGGATGCGTGGCAAATTTATGTGTGCGTACTGCCCTAAAATATGCGCGAATGTTAATGAAATACGTTCTCATAGCCAAGCGCACGATAAACTTCTAATTTTCCACAAACCGGAAGTTCGGAATTCATTTCCGCTTAGAATTGACATAACAAATTTAAAATGCAGCCTATGTGATTTGAGTTGTTTAAGCTTAATGGACTTAAAAACGCACCTGATAACGGATCATGAAAAAATCTTCAACTCTAAATATAGCGATGGTGTAGTTCCATTCGTTTTGACTAGCTCCGAATATCGCTGTGTTCATTGCGGCAAATCGTTTGAGAGCTATATGAATTTATTCAGCCATATGAACGAACATTATCAGAGCTTTGTTTGCTATACTTGCGGAAAAGGATATTCCGCGAAGCACAAGTTAAGAGCTCATCAGAAGTGTCACGAAACTGGAAAAATTGCTTGCCCTAAATGCGACCTCGTGTTCGTGAATCATGTTGTCAAAAATAGACATGTCGCCATGACTCACGGTCCGAAAAAACGGTATCGTTGTCCTATATGTGATATGACATTCAAATCTTGCCATTCGAGATTAAAACATCTGGACAAAATTCATGGACAAAAAAGGGAATATCGTTGCAATATGTGCCCATCTGTGTTCGGGAGTGGGACGATCAAGACAGTTAATTGGAAACGGAGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATAATCGAATACTCGAATGCCTGTCCTTTCCGATGGAAACGCGGCGCTTTCGCTTGTTCGCACTGCCCGAGGACGTTCGGTCATTTTCAGGACGTTTTCAACCACGCTCAGGAGCATAGCAATCGTCTCGAAGCCATGAGATACGCACGGCCATACGATAACGTTAAGATAGAAATAAGTAATCTTAAATGTGTTATTTGTCACGACAGCATGAACGGCTTGGAGCAGCTTAAAGAGCATTTGCTAAACGTTCACCAAAAGCCGATACATAAAGAATTGAGCTTGGGTGTCACACCATTCATTCTTCAGAATAAAGAAATGCTCTGTACGCATTGTGACGAACGTTTCTCTTTGTTTTCTAGATTGAATAGTCACATGAATCAACACTATCCGAATAATATCTGTTTTCACTGTGGCAAATCGTTTTCCGCCGTTCACCGCTTGAAGGCTCACCAGTTAACTCACGAATCAAACGAAATGGAACACAAGTGCTCGAAATGTGACGAAATATTCGATACGCGAGCGTTGAAAAACTATCACATAAATACAACACACGCGCCAGAAAATCGCTACAGATGCCCGTATTGTAACTTATCGTTCAAACGTTATTCGGATCGCTTGAGGCATTTGAAGCAGCTTCACGACCAAACGGTTGAATATCCGTGCCATTTGTGTTCAGCGATTTTCGCTATGTCCGATCAGAGAACGAAACACATAAAAAACGTTCATATAAAACATAAGCAATTTCAGTGCGACTTTTGTCCGAGTAAATTCGTGACCGCTGGACAGTTGAAGAATCATCTCGTGAAGCATTCGGGACTGAGGGAATATCAGTGCGGTGTTTGTAAAAAGAGCTACGCAAGAGCTAGAACGTTGAAGGAACATATGCGGATACACAATAATGATAGACGATTTGTTTGCGAATATTGCAATAACGCCTTCATCCAAAAGTGCAGTCTTAAAAGTCATTTGAGAACGCACCATCCAACCGCGGAACCTACTAAGATTGCAGTTTAA
- Protein Sequence
- MGNEAALKLESSESFNIEDPLKVTEKKRYQRSARAEARLVTKKNASAILECWTLCPFRWKRNRFKCAYCEDNFIECTELRSHIRLCSTQHCVKDIYSKFKEMSLINIDVTEATCRICAMPFQGVNEMRNHVIDHGFDFDTSHPDGVLPFFLDKEAWKCLICRESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHITGTFPCDKCRQVFTMRAARDYHKAHAHAKGPRYECPQCNMRFEGYYERMNHLNKEHREKEVLYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGPALADSEGVKVRRVRKLKENVCARQKRRRRRANNELPEESEKRIAKTMMRRNAMTILECSTAWAFRWFQSAYYCSYCDVKFVDPLLLRGHVATFHIADAPTKRIFSKLTENNMVKVDVSNVHCRICNCRIESIDSLKKHLMDVHDKTLNHDYNDGILPFKLDSNGFECQICCANFTSFCKINEHMNTHFKNYICDACGKAFVSKSRFRTHVQSHETGSFPCGMCDEILETRVARMCHRSKVHKKGVRYTCPRCPEVFTTYYARSKHLVDGHDQQKQKYECFACGKSFETSCKRAAHIRDGVAREITVKIEWKKARRATEDKANAALLLECSNAVAFRWMRGKFMCAYCPKICANVNEIRSHSQAHDKLLIFHKPEVRNSFPLRIDITNLKCSLCDLSCLSLMDLKTHLITDHEKIFNSKYSDGVVPFVLTSSEYRCVHCGKSFESYMNLFSHMNEHYQSFVCYTCGKGYSAKHKLRAHQKCHETGKIACPKCDLVFVNHVVKNRHVAMTHGPKKRYRCPICDMTFKSCHSRLKHLDKIHGQKREYRCNMCPSVFGSGTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPRTFGHFQDVFNHAQEHSNRLEAMRYARPYDNVKIEISNLKCVICHDSMNGLEQLKEHLLNVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNEMEHKCSKCDEIFDTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKQLHDQTVEYPCHLCSAIFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCGVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHLRTHHPTAEPTKIAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985355;
- 90% Identity
- -
- 80% Identity
- -