Nurt018551.1
Basic Information
- Insect
- Nymphalis urticae
- Gene Symbol
- -
- Assembly
- GCA_905147175.1
- Location
- LR990009.1:3008235-3020670[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.016 1.5 10.1 2.3 1 23 240 263 240 263 0.94 2 26 0.0048 0.45 11.7 0.1 3 23 290 311 288 311 0.93 3 26 0.0026 0.24 12.6 1.4 1 23 333 355 333 355 0.98 4 26 0.14 13 7.1 1.8 1 23 359 381 359 381 0.81 5 26 0.044 4 8.7 0.8 1 23 385 408 385 408 0.96 6 26 0.15 14 7.0 2.3 2 23 415 437 414 437 0.95 7 26 0.0076 0.71 11.1 0.1 3 23 446 467 444 467 0.93 8 26 0.0012 0.11 13.6 4.6 1 23 473 495 473 495 0.98 9 26 4e-06 0.00037 21.4 2.8 1 23 501 523 501 523 0.98 10 26 0.00012 0.011 16.7 0.1 1 21 529 549 529 550 0.96 11 26 0.032 2.9 9.1 1.6 1 23 594 616 594 616 0.95 12 26 0.98 91 4.4 0.0 3 23 646 667 646 667 0.95 13 26 0.074 6.8 8.0 0.6 2 23 688 710 687 710 0.95 14 26 0.00043 0.04 15.0 2.6 2 23 716 738 715 738 0.95 15 26 0.0046 0.42 11.8 0.5 1 23 743 766 743 766 0.94 16 26 0.43 40 5.6 0.4 2 23 769 791 768 791 0.93 17 26 0.0086 0.8 10.9 1.5 2 22 798 818 797 818 0.94 18 26 0.0046 0.42 11.8 0.4 1 23 876 899 876 899 0.92 19 26 1.3 1.2e+02 4.0 0.1 3 23 928 949 926 949 0.95 20 26 0.12 11 7.3 0.3 3 23 973 995 971 995 0.95 21 26 0.0017 0.15 13.2 0.5 3 20 1002 1019 1000 1023 0.90 22 26 0.0092 0.85 10.8 0.3 1 23 1028 1051 1028 1051 0.98 23 26 0.0013 0.12 13.5 0.1 2 23 1057 1079 1057 1079 0.94 24 26 5.3e-05 0.0049 17.9 4.7 1 23 1083 1106 1083 1106 0.97 25 26 0.00023 0.021 15.9 0.6 2 23 1113 1134 1112 1134 0.96 26 26 0.0021 0.2 12.8 3.0 1 23 1140 1162 1140 1162 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTTGATGAAATTGTAGTGAAAGAGAGCCCGGGGCTATGCCGGTGCTGTCTTTCTGAAGGTTGTTATAAGGACTTAGGTACAGAATATTCTTGGATGGACGATACTGAAGTGTACGCCGATATGCTGCTAGAATGCTTTGATATTAGTATATCACAACACATGGAAGGCCCTAACGGACCAAATCGTCTTATCTGTGAGGTATGCATCACACGTCTTCGAGATGCTTGTAACTTCAAGAAGCAGGTTCTCGATTCGGAGAAGAAGTTTGTCGACATGGTTGGTAGAGGCGAGTTCAAGTCTAAAGTGATCGTTTATCAGGATCAAATGAAGTCTGAAATGGTGATGGAACCGCAACCGGCTCACGATGCTGATGTTGAATATTTGGACGAAGAAGTTGATTACGACGATGGAAATAAAGATGACTCGAACGAACCCACTGTATCAGAAGACATAACGGTCGACGCGTTACCGATTAAAGGCAAACGTGGGAGGCCCAAGAAGACAGCTGTAAAATCGGAAAAGAAAAAAACGAAACTAGAGGAAAAGACCAAAACGAAAATTGTCAAAGGTGAAAAACGCCCTGTGATGGCAACCGAGGCGCAGATTAAGTCCTCAATGACAGCTACAAAACGGAATCGTCTCATGAAAAGGAACGCTATCATTATATTAGAATCGTCAACGGTGGTACCGTTTAAATGGCACCGTCACAACTATCTCTGTTTCTTTTGCCACCGACCATTCAAAAGCTTGGAACCTTTGAAAGAGCACACGAGAAACGATCACAGAGATTCCAGTATAAAATCCGCAGTATCGTACCTTAAAAGGGACGAGAAGGTTAAAATCGACGTGTCCATTATCAATTGTAAGATTTGTGATACAAATTTTGATAATATAGACTCTCTAATAGAACACGTCAAAGATGAACATGACAGGATTTTCATGGATAATTGTGGCTACGGCGTTATACCGTACAAGTTGAATGTCGACAAATTTCAATGCGCGCTCTGTCAAAGAGATTTTCGATATTTTATCAAATTGAATCAGCACATGAACGAGCACTACGGTAATTATGTTTGCGAACTGTGCGGCAAGTCGTTCTTAAGTCAGGACCGTTTGCGATGCCATTCCCTCAGCCATGGTTCGAAATTCCGCTGCAGCTCGTGCCCGGAGACGTTCGAATCGTTGACGCAGAAGAACAACCACGAAACGACCGTTCACGACAAGAAACATACGATAAAGTGTTTCTTCTGCCCGGAAACGTTTCAGAATTACGCGCTGAGGAAGCGTCATCACAATTCCGCGCACGACGTCGAAATATCGACGATCGATTGTCCGGTATGCGGGAAATCGTTCCATATCGTCAGCAAGATGTGGGCTCACTTGAAGGAGGTTCACGTCAGGGAGAAGAACTTCTCGTGTTCCCTCTGCGATCAGAAGTTCTTCTCGAGGACACACGTCCAGAAACATATGATAAAACATTTGGGCGAGAAGATACACCAGTGCGATGTCTGTAAGAAGTCCTACGCGAGGAAGCAAACGCTCAGGGATCATATGAGGATACACAATAACGATAGAAGATTCGTTTGTCCAGTTTGTAGTCAAGCCTTCGTTCAGAATAATAGCTTGCGTTTGCATATGAAATTGAGAATTATATTTTCAGATATAAAACGTCGGAATATCAAGGGCTGTGAATCGTCGTCGATGCGTAGACGGAGAAATCTCGAATTGATATTCAACAATACGACGATAATACCGTTCAAATGGAGGGGGAAATATCTATGTTTCTTTTGCAGCAAGGATATAGCTCAGTATTCTGAATTACGTAAACATACGAAATCCCACGGGAACTGCTCGATAGAGGATCACTCCTTGAAAGTATTGAAAGGCGGTCAGAATATGGAAATAAAGATCGACGTATCGGAAATTGGCTGCGAGATCTGTAACGAAGAATTTCCAGCGTTCGATGACGTACTGAATCATCTCTCCGTCAAGCATGGACTGGAATATGACAAAGATGTCGATATGGCTATAGAGGAATATAAGCTGGTCGATTTGAGCTGTAGTCAGTGCGACGATAAATTCACTTACTTCGGTTATCTCGTTTCGCACATAAATAACACACATCCAAAGAACTGTTTGATATGTGACAAATGCAATCAGAAATTCAATAAGAAACGCGATCTGTTCTCGCACATGAAGAATTATCACAGGGAAGGGGGCTATCCGTGCGACGTGTGCCCTCAAAGTTTCAGCTCGCTGAACATACTGAGGAAACACAGGAGTAACAGGCATTTGACCAGATGTAACATTTGTCACTTGAGACTGCCCTCGGCGGTTCTCAAACAACGACACATCGAATTGGAACATCCAGATAACGGTTCGCTGCAATGTGATATTTGTTACAAAGATTTCCACACGAAACAAGGTTTGAGAATGCACACGCGGAAATGTAAAGGCGATATTTTCGATATAGAGATAAAGAAAGAGGAATACGATGCTATGGATTTGGACGGTAGTTACGATGATGTGAAACGTCCAAGCGTCAAACAGATTAGAGAAAATATTGTAATAGTAATCAATATGTCGACTGCGATACCGTTTAATTTCTATAAAAATAAATTCAATTGCTTTTATTGCTCGAAGGATTTCCCCGATTCGGATTCAATGAGAGAACACACGGTAGTAGAACATCCGATATGTGATATTAAAGAGAAATGCATAAGGAAATGCAGGGAATCGGTTGCGTGCGTCAAAATCGATATATCGTCGTTGGCGTGCAAGGTTTGCTTCGAATCGATGCCGGATTTGGAGACTCTTTTAGACCATCTTATAACGAAGCATGACGCTAATTACGATAAATCAATAACCACATGCCTACAGCCGTACAAATTGATCAAAGATCACATGGCCTGTCCGAATTGTCCGAGCGAAGTGTTTCGTTTCTTCGGCACGCTATTGAAACACATGAACAATAAGCACACGAATAACAATATAATATGCGTTTACTGCGGACAAACGTTCCGACGGGATCAGAACCTGAGGGTCCATGTATGGAGACATCACAGAGACGGTCGTTTCAAGTGTAACATATGCGGAGCCGATTGCAACATCCCGTCAAGGTTATACATGCACATGGCGACCGCGCACGGCGTGAAAGCGGCGAAGTGTCCGAAGTGTCCGGAAGCGTTTCCGACACAGTATCTACGTCAGAAGCATTTGATAGAAGCGCACGATTCCGGGCACAAGTGCTCCTATTGCGGGAAATTATTCACGCGTAATTCTTTCATGCGCGATCACATAAGACGGACGCATTTGAAGGAGAAGAACGTCGAGTGTTCCATATGTAACATGAAGTTCTTCAACAATATCCTCCTGCGTCGTCACATGGTGAAGCATAGCGGCGAGAAGAATTTCCACTGTGATATCTGCGGGGAAAGATTCTATTGGAGGAAGAGCTTACGAACGCACATGTCCAGACATACTAAGCATATAAATTCTATATAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYSWMDDTEVYADMLLECFDISISQHMEGPNGPNRLICEVCITRLRDACNFKKQVLDSEKKFVDMVGRGEFKSKVIVYQDQMKSEMVMEPQPAHDADVEYLDEEVDYDDGNKDDSNEPTVSEDITVDALPIKGKRGRPKKTAVKSEKKKTKLEEKTKTKIVKGEKRPVMATEAQIKSSMTATKRNRLMKRNAIIILESSTVVPFKWHRHNYLCFFCHRPFKSLEPLKEHTRNDHRDSSIKSAVSYLKRDEKVKIDVSIINCKICDTNFDNIDSLIEHVKDEHDRIFMDNCGYGVIPYKLNVDKFQCALCQRDFRYFIKLNQHMNEHYGNYVCELCGKSFLSQDRLRCHSLSHGSKFRCSSCPETFESLTQKNNHETTVHDKKHTIKCFFCPETFQNYALRKRHHNSAHDVEISTIDCPVCGKSFHIVSKMWAHLKEVHVREKNFSCSLCDQKFFSRTHVQKHMIKHLGEKIHQCDVCKKSYARKQTLRDHMRIHNNDRRFVCPVCSQAFVQNNSLRLHMKLRIIFSDIKRRNIKGCESSSMRRRRNLELIFNNTTIIPFKWRGKYLCFFCSKDIAQYSELRKHTKSHGNCSIEDHSLKVLKGGQNMEIKIDVSEIGCEICNEEFPAFDDVLNHLSVKHGLEYDKDVDMAIEEYKLVDLSCSQCDDKFTYFGYLVSHINNTHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYPCDVCPQSFSSLNILRKHRSNRHLTRCNICHLRLPSAVLKQRHIELEHPDNGSLQCDICYKDFHTKQGLRMHTRKCKGDIFDIEIKKEEYDAMDLDGSYDDVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVVEHPICDIKEKCIRKCRESVACVKIDISSLACKVCFESMPDLETLLDHLITKHDANYDKSITTCLQPYKLIKDHMACPNCPSEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHVWRHHRDGRFKCNICGADCNIPSRLYMHMATAHGVKAAKCPKCPEAFPTQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMSRHTKHINSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080079;
- 90% Identity
- iTF_01080079;
- 80% Identity
- -