Npol020806.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- -
- Assembly
- GCA_905220585.1
- Location
- HG992268.1:1958149-1973873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.015 1.3 10.1 2.3 1 23 225 248 225 248 0.94 2 26 0.0042 0.37 11.8 0.3 3 23 275 296 273 296 0.93 3 26 0.0011 0.095 13.7 1.5 1 23 318 340 318 340 0.98 4 26 0.16 14 6.8 1.6 1 22 344 365 344 366 0.77 5 26 0.021 1.9 9.6 0.3 1 23 370 393 370 393 0.95 6 26 0.3 26 6.0 1.7 2 23 400 422 399 422 0.94 7 26 0.0081 0.71 11.0 0.1 3 23 431 452 429 452 0.93 8 26 0.0027 0.23 12.5 4.5 1 23 458 480 458 480 0.97 9 26 3.6e-06 0.00032 21.5 2.7 1 23 486 508 486 508 0.98 10 26 0.00025 0.022 15.7 0.1 1 21 514 534 514 535 0.96 11 26 0.011 0.95 10.6 1.6 1 23 579 601 579 601 0.95 12 26 0.043 3.8 8.7 0.1 2 23 630 652 629 652 0.93 13 26 0.069 6.1 8.0 0.5 2 23 673 695 672 695 0.95 14 26 0.00041 0.036 15.0 2.6 2 23 701 723 700 723 0.95 15 26 0.0016 0.14 13.2 0.9 1 23 728 751 728 751 0.96 16 26 0.55 49 5.2 0.5 2 23 754 776 753 776 0.93 17 26 0.0082 0.72 10.9 1.5 2 22 783 803 782 803 0.94 18 26 0.0076 0.67 11.0 0.6 1 23 861 884 861 884 0.90 19 26 3.1 2.8e+02 2.8 0.0 3 23 913 934 911 934 0.93 20 26 0.11 10 7.3 0.3 3 23 958 980 956 980 0.95 21 26 0.00068 0.06 14.3 0.6 3 20 987 1004 985 1008 0.90 22 26 0.032 2.9 9.0 0.3 1 23 1013 1036 1013 1036 0.95 23 26 0.0012 0.11 13.5 0.1 2 23 1042 1064 1042 1064 0.94 24 26 5e-05 0.0044 17.9 4.7 1 23 1068 1091 1068 1091 0.97 25 26 0.00022 0.019 15.9 0.6 2 23 1098 1119 1097 1119 0.96 26 26 0.002 0.18 12.8 3.0 1 23 1125 1147 1125 1147 0.98
Sequence Information
- Coding Sequence
- ATGGAGTTCGATGAAATTGTAGTGAAAGAGAGCCCGGGGCTATGCCGGTGCTGTCTTTCTGAAGGTTGTTATAAGGACTTAGGTACAGAATATAATTGGATGGACGATACTGAAGTGTACGCCGATATGCTACTAGAATGCTTCGATATTAGTGTGTGCATCACGCGTCTTCGAGATGCTTGTAACTTCAAGAAGCAGGTTCTCGATTCCGAGAAGAAGTTTGTCGACATGGTCGGTAGAGGCGAGTTCAAGTCTAAAGTGATAGTTTATCAGGATCAAATGAAGTCTGAAATGGTTATGGAACCGGAACCGGAACCGTCTCACGATGCCGATGTTGAATATTTGGACGAAGAAGTTGATTACGATGATGGAAATAAAGATGAATCAAACGAACCGACGGTATCGGAAGATATAACAGTTGATGCGTTACCGATAAAGGCCAAACGTGGAAGGCCTAGAAAGGGAGCTGTCAAACCGGATAAGAAAAAAGCGAAACTAGAGGAAAAGACTAAAAAGAAAATTGTCAAAGGTGATAAACGCCCTGTGATGGCAACCGAGGTGCAGAGTAAGTCCTCAATGACAGCGACGAAACGGAATCGTCTGATGAAAAGGAATGCTATTATTATATTAGAATCGTCGACGGTGATACCGTTTAAATGGCACCGTCACAATTATCTCTGTTTCTTTTGCCATCGTCCTTTTAAAAGTTTAGAACCTTTGAAGGAACACACGAGAAATGATCACAAAGATTCCAGTATAAAATCCGCAGTTTCGTACCTTAAAAGAGACGAAAAGGTTAAAATTGACGTATCCGTTATCAATTGTAAGACTTGTGATACAAATTTTGATAATTTAGACTCTCTAATAGAACACGTTAAAGATAAACATGATAGGATTTTCATAGATAACTGTGGTTATGGCGTGATACCTTACAAGTTTAATGATGACAAATTTCAATGCGCTCTCTGTCAGAAGGATTTTCGATACTTCATCAAATTGAATCAACACATGAACGAACACTACGGTAATTATGTTTGTGAATTGTGCGGTAAATCGTTCTTAAGTCAGGAGCGTTTACGCTGCCATTCCCTCAGCCACGGTTCGAATTTCCGTTGCAGCACATGTCCGGAGGTATTCGAATCGTTGACGCTGAGAAACAATCACGAAATGTCCGTACACGACAAGAAACGTACGATAAAGTGTTTCTTCTGTCCGGAAGTATTCCAGAATTACATGCTGAGGAAGCGTCATCACAATATCGCGCACAACGTCGAAATATCGGTGATCGATTGTCCGGTTTGTGGGAAAACGTTCCATATCGTCAGTAAAATGTGGGCTCACTTGAAGGAAGTGCACATCAGAGAGAAGAACTTCTCGTGTTCCCTTTGCGATCAGAAGTTCTTCTCGAGGACACACGTTCAGAAACATATGGTAAAACATTTAGGCGAGAAAATACATCAGTGTGAAGTTTGTAAGAAGTCCTACGCGAGGAAGCAAACGTTGAGAGATCATATGAGGATACACAATAACGATAGAAGATTCATTTGTCCAGTTTGTAGCCAAGCTTTCGTTCAGAATAATAGTTTGCGATTGCATATGAAGTTCAGAATTATATTTTCAGATATAAAACGTCGGCAAATAAAAGGCTGTGAATCGTCGTCGATGCGTAGACGGAAAAATCTTCAATTGATTTTCAACAATACGACGATAATACCATTCAAATGGAGGGGGAAATATCTATGTTTCTTCTGCAGTAAGGATGTAGCTCAATATTCTGAATTACGTAAACATACGAAATCTCATGGGAACTGCTCGATAGAGGATCACTCCTTGAAAGTATTGAAAGGTGGACAGAATATGGAAATTAAAATAGATATATCTGATATTAGCTGCGAGATTTGTAATGAAGAATTTCCATCGTTTGATGACGTGTTGAATCATCTTTTTGTCAAGCATAAACTGGAATATGACAAGGATGTCGATATGGCTATAGAAGAATATAAGCTTGTGGATTTGAGTTGCAGTCAGTGTGACGACAAATTCACATATTTTGGTTATCTCGTTTCGCATATCAATAATAATCATCCAAAGAACTGTTTGATATGTGACAAATGTAATCAGAAGTTCAATAAGAAGCGTGACCTTTTCTCGCACATGAAGAATTATCATAGAGAAGGTGGTTACACGTGTGACGTGTGTCCTCAAAGTTTCAGCTCGCTAAACATACTGAGGAAACATAGGAACAATAGGCATTTAACCAGATGTAACATTTGTCACTTGAGACTGCCTTCAGCGGTTCTCAAACAGAAACACATAGAGTTAGAACATCCGGACAACGGTTCGTTGCAATGTGATATCTGTTACAAAGACTTTCACACGAAACAAGGTTTGAGAATGCACACGCGGAAATGCAAGGGCGATATCTTCGATATAGCCATAAAGAAAGAGGAATACGAGGCTATGGATTTGGACGGCAATTATGATAGTGTTAAACGTCCGAGCGTTAAACAGATCAGACAGAATATTGTAATAGTCATCAATATGTCGACAGCGATACCGTTTAATTTCTATAAAAATAAATTTAATTGTTTTTATTGCTCAAAAGATTTCCCCGATTCAGATTCAATGAGAGAACATACAGTCTTGGAACATCCGATATGTGATGTTAAAGAGAAATGCATAAGGAAATGCAGGGAATCGGTTGCGTGCGTTAAACTCGATATTTCGTCTTTAGCGTGTAAGGTTTGTTTCGAATCGATGCCAGATTTGGAGACTCTATTAGATCATCTTATAATAAAACACGAGGCCAATTACGACAAATCAATAACCACATGCTTACAGCCTTACAAATTGATCAAAGATCACATGGCCTGTCCGAATTGTCCGAGCGAAGTGTTTAGATTTTTCGGCACACTATTGAAACACATGAACAATAAACATACGAACAATAATATAATATGCGTGTATTGTGGACAAACATTTCGACGGGATCAAAACTTGCGAGTTCATATATGGAGACACCACAGAGACGGTAGATTCAAGTGCAATATATGCGGAGCCGATTGCAACATACCGTCAAGGTTATACATGCATATGGCAAATGCACATGGAGTGAAAGCGGCGAAGTGTCCGAAGTGTCCGGAAGCGTTCCCGACACAGTATCTACGACAGAAGCATTTGATTGAAGCACACGATTCCGGACACAAATGTTCGTACTGTGGGAAATTATTCACGCGTAATTCGTTTATGCGTGATCACATAAGACGGACGCATTTGAAGGAGAAGAACGTCGAGTGTTCCATATGTAACATGAAGTTCTTCAATAATATACTTTTGCGACGTCACATGGTGAAACATAGTGGGGAGAAGAATTTCCATTGTGATATATGCGGGGAGAGGTTCTATTGGAGGAAGAGTTTACGAACGCACATGTCCAGACATAATAAGCATATAAATTCTATATAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYNWMDDTEVYADMLLECFDISVCITRLRDACNFKKQVLDSEKKFVDMVGRGEFKSKVIVYQDQMKSEMVMEPEPEPSHDADVEYLDEEVDYDDGNKDESNEPTVSEDITVDALPIKAKRGRPRKGAVKPDKKKAKLEEKTKKKIVKGDKRPVMATEVQSKSSMTATKRNRLMKRNAIIILESSTVIPFKWHRHNYLCFFCHRPFKSLEPLKEHTRNDHKDSSIKSAVSYLKRDEKVKIDVSVINCKTCDTNFDNLDSLIEHVKDKHDRIFIDNCGYGVIPYKFNDDKFQCALCQKDFRYFIKLNQHMNEHYGNYVCELCGKSFLSQERLRCHSLSHGSNFRCSTCPEVFESLTLRNNHEMSVHDKKRTIKCFFCPEVFQNYMLRKRHHNIAHNVEISVIDCPVCGKTFHIVSKMWAHLKEVHIREKNFSCSLCDQKFFSRTHVQKHMVKHLGEKIHQCEVCKKSYARKQTLRDHMRIHNNDRRFICPVCSQAFVQNNSLRLHMKFRIIFSDIKRRQIKGCESSSMRRRKNLQLIFNNTTIIPFKWRGKYLCFFCSKDVAQYSELRKHTKSHGNCSIEDHSLKVLKGGQNMEIKIDISDISCEICNEEFPSFDDVLNHLFVKHKLEYDKDVDMAIEEYKLVDLSCSQCDDKFTYFGYLVSHINNNHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYTCDVCPQSFSSLNILRKHRNNRHLTRCNICHLRLPSAVLKQKHIELEHPDNGSLQCDICYKDFHTKQGLRMHTRKCKGDIFDIAIKKEEYEAMDLDGNYDSVKRPSVKQIRQNIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVLEHPICDVKEKCIRKCRESVACVKLDISSLACKVCFESMPDLETLLDHLIIKHEANYDKSITTCLQPYKLIKDHMACPNCPSEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGADCNIPSRLYMHMANAHGVKAAKCPKCPEAFPTQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDICGERFYWRKSLRTHMSRHNKHINSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01080899;
- 90% Identity
- iTF_01080899;
- 80% Identity
- -