Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR990007.1:7020857-7033474[-]

Transcription Factor Domain

TF Family: MBD
Domain: MBD domain
PFAM: PF01429
TF Group: Unclassified Structure
Description: The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2.6e-18 1.5e-14 54.0 0.0 7 70 250 314 246 318 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2.6e-18	1.5e-14	54.0	0.0	7	70	250	314	246	318	0.94

Sequence Information

Coding Sequence: ATGTCGGACGAAATGGCGGTGGGTGATAAAGCATCAAAAGATGAACAAAAACTAGAAGGCGGCGAGACGGAAACAGAGACCATGGAGACCGCTGATGCTTCAGAGCCTCAAGCAGAACCTTCATCACCTGGATCTGAAGCGACATCGGGACATATTGAAGATGAATCTGCCATGGAAAAAGATGAATCAAAAGATAATTTACAAACAACTGATTTACCAATAACGGAAGAACCAGAAACAGAAGAGACGACGGAAGAACAGATAGAACCTGATGAGGAAGTGACAAGAGGCATCAAGCGTAGAGCATCCGCAGCATTTAGTGATGGCGGAGATGAAGAGTTTAAAGGTTTTGACAATTGTGAGAAAAGCAGTACCGCAGATTATAGTCGTATTATTGAGCGCTTGGAAGCTGAGGTGTCAGCTGCCGTCAAGACATACACACCAGTCCGTAGCGTCATGGCTAGCCCAGCGATCAGAGCCAGTAAACGAGCTCGCCAAGACACAGGTGGGTGTACCAAGTGGTCTGAACATCTCGAGGCGGAGGTGACTGCCTTCGTGAGAAGCTTCTCAGATGAAAACGGGGATACAGTGGCTGCGAAGCGTCAGCGGCGGGGTACTGATAGTTCTCGGCCGTCGTCGGCGCTGTCGTCGCGCTCGGACGGCGAGGGCGCGGTGTCGACGGACGCGTCGTCGTCGCCGGCGGCGCGCGGCGGGCGGCGCGCCACGGTGGAGATGTCGGCGCCGGCGCTGCGCGTGCCGCTCGAGCGCGGCTGGCGGCGCGAGCTGGTGTACCGCGCCGTGGGCGCCTCGGCCGACGCGTCCAGCCGCCGCAACGCCGACATCTACTACTACACGCCGCAAGGGAAGAAGCTGCGCTCCACGAGGGAGGTTGCCGAACATCTGTCAGGAACAGGTCTTACATTAGAAAACTTCTCTTTCTTCAAAGAACCTTTGGGAATTGATGATCCTGAAAAAGAAATTATACGTGATGCTAAAGTCATCAGACGTGTGGAGTCCCCGGTACCAGCTGCACCGCCACCAGTGCTGGATGGCAAGAGGACGCCTAAGCCCAAACCTCCCAAAGGTGCTAGCCCTGAACCTGCTACTCAGAAGTCGCCACCTGGTAAACTTAAGGTAAAATCAATGGGTTCCCGGCTAAGCAGTAATGGTACCACTCCAAAGCCAGCAAAGAAAGCACCGACTCCACAACAACAGCCACAAGCACAACAGCAACAGCAGATGTCAGCGCCAGCAGACAACAACAATACTGCAGCTTGGAAAAAGCCCAGGGGCCTGCTGCCGCCGCAGCCGCAGACGCAGCCGCAGCCGCGTCCTGTGCAACCTGCGCACCTAGCACCTTCTGCGCATACTACTCAAGTTGCGCACCCCACACATTCTGCACACACTGCGCATCCCGCGCAGGTTACTCACAACCCTGCTCCGCAAGCTCCGGAAAGGGAGCCCATTCCGGTGCATCACCATCAGCAGCAGGTGGCGCGCCAAGTGCAGCAGCCGTGCTCGATGTCGTGCGGGCGCGGCGCCGTGCCGTCGCTGGCGTGCGACGCGTGCCTGTGTCTGTACCACCCCGTCTGTGTGGGCTACCCCGCCGCGCCCGACCGCTTCCTGTGCAAAAACTGTCGCAAATCAACATCCCCACCGCTGGAACCTTCGCCACTCGCCCATAATAAAACAGGCGTCACCACCAGTGCGAGCCAATTAACCAACGCCCCACCAACCATGTCTAATACTGGTGCCAGACGACTACCGGTGCCGGTGCCGGCGAAAGTGCCGAAGAATGACAAAAGAGTACTCTTGAGGATGAAGGTGGCGGGCGGCGGGCCGGACGGCGAGCGCGTGTGGGCGGTGGCGAAGGGCGCCCCGCCGCGGCCCGCGCTGCCGCAGTCGCTGGCCGTGCTCAACGGACGCCGGTTCATCGTCGTCGCGCGCGCCAGCCCCCACGAGGCGCCCAAGGCGCTGCGCGCGCGCTCGCTGGCCAACGGCGCCGCGTCGCCGCCCGCCGCGCCCGCGCAGTCCCCGCGCCGCCGCGGCCGCCCGCGCCTCGACGACGCCGACCACTTCACCGCCTTCCACGCGCGCGCGCGCGCCGCCGACTACAACGTGGCCGTGCAGATATTTCAATATCTTGGAATGCGCGACGTGGCCCGCTGCGCACGAGTGTGTCGGCTGTGGCGCCAACTAGCGTCCGCGCCGGCGCTCTGGAGGCACGTGCGGATGAAAAACTCACATGTCAGCGACTGGGCAGGCTTGTGTGCAGCGTTAAAGAGTCACGGCACGAGATGGTTGGATTTGCGTAAGATGTTGCTACCACCTAACGACAGCGTCTTTTGGGATCACTTTGCAGAACACATCGGTTCCGTGGATACACTCGAGAGGTTGGAGCTGTGTCGGTGCCCGGCGCGCGCGGTGGAGGCGGCGTGCGAGCGCCTGCCCGGCCTGCGCGCGCTGGCCGCGCCCGCCATCCGCGACGCGCGCCTCGACCCCGCGCCGCTCGCGCGCCTGCCGCGCCTCGAGCTCCTGCGCCTCAAGAGCCTTACTGGACTATCCTTAACCCGCGACCTACATTCCCTGTCTTCACTATCACGTCTCCAACATTTATCACTAACATCGATCAAAGAGCTTGGTTGGTGTGCATGTGAAGTAGTCGGACAGCTTGAACAGCTAGAATCACTCGAGCTAGGTGAATGTTCCTTCGGTGGATCGTTCGCGACAGCCCTGGGCAAGTTGGTTAAACTCCGGAGGTTGCGGCTAGAGCGTGGAGTGTCTCACTGTGCCGCACCAGCACTTCTAAGAGCACTTTCAGCGTTGCCAAAGTTAACCAGACTCGAACTTGTTAATTTTGATGTTAAGGTTGGATTCGACGATGCTCTCGCGGAGTGTAAAAACATTCAGAGACTGCTCATTATACCGACATATGTGTCACAATCTGCGACAACCAATAAACAGGTATTAAGCGGTGTACTCCGACTGAAGGATACGTTGACGCATTTGATGTGGGGCGTGACTATCGAGTTGCTTCGCGTTACTGAATTATTCATAGACCAGTGTGAAGCTGGCGAAGGCGAAGGCAAGCGGCGCGACGTCGGCGAGTGCATTCCTGTACTGAAACCTGTACCCGGCTGTCGCCTGCCCGACGATCACCGCACCGTGGTCGGCCCGCCGCAGGTGGAAATACTCCCGATCCCGACTCTACAACGGCTCTTGTCAGCTCAACTGCCGAACACCAAACTCAAATTGCTGCGCATCCCCTTCCACGCTACCTGGCGGCAGTCACTCGCAGACTTCCAGTAG
Protein Sequence: MSDEMAVGDKASKDEQKLEGGETETETMETADASEPQAEPSSPGSEATSGHIEDESAMEKDESKDNLQTTDLPITEEPETEETTEEQIEPDEEVTRGIKRRASAAFSDGGDEEFKGFDNCEKSSTADYSRIIERLEAEVSAAVKTYTPVRSVMASPAIRASKRARQDTGGCTKWSEHLEAEVTAFVRSFSDENGDTVAAKRQRRGTDSSRPSSALSSRSDGEGAVSTDASSSPAARGGRRATVEMSAPALRVPLERGWRRELVYRAVGASADASSRRNADIYYYTPQGKKLRSTREVAEHLSGTGLTLENFSFFKEPLGIDDPEKEIIRDAKVIRRVESPVPAAPPPVLDGKRTPKPKPPKGASPEPATQKSPPGKLKVKSMGSRLSSNGTTPKPAKKAPTPQQQPQAQQQQQMSAPADNNNTAAWKKPRGLLPPQPQTQPQPRPVQPAHLAPSAHTTQVAHPTHSAHTAHPAQVTHNPAPQAPEREPIPVHHHQQQVARQVQQPCSMSCGRGAVPSLACDACLCLYHPVCVGYPAAPDRFLCKNCRKSTSPPLEPSPLAHNKTGVTTSASQLTNAPPTMSNTGARRLPVPVPAKVPKNDKRVLLRMKVAGGGPDGERVWAVAKGAPPRPALPQSLAVLNGRRFIVVARASPHEAPKALRARSLANGAASPPAAPAQSPRRRGRPRLDDADHFTAFHARARAADYNVAVQIFQYLGMRDVARCARVCRLWRQLASAPALWRHVRMKNSHVSDWAGLCAALKSHGTRWLDLRKMLLPPNDSVFWDHFAEHIGSVDTLERLELCRCPARAVEAACERLPGLRALAAPAIRDARLDPAPLARLPRLELLRLKSLTGLSLTRDLHSLSSLSRLQHLSLTSIKELGWCACEVVGQLEQLESLELGECSFGGSFATALGKLVKLRRLRLERGVSHCAAPALLRALSALPKLTRLELVNFDVKVGFDDALAECKNIQRLLIIPTYVSQSATTNKQVLSGVLRLKDTLTHLMWGVTIELLRVTELFIDQCEAGEGEGKRRDVGECIPVLKPVPGCRLPDDHRTVVGPPQVEILPIPTLQRLLSAQLPNTKLKLLRIPFHATWRQSLADFQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01079076;
90% Identity: iTF_01079076; iTF_01079914; iTF_01508083;
80% Identity: -