Npol021756.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- ZNF296
- Assembly
- GCA_905220585.1
- Location
- HG992268.1:7120228-7128753[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0083 0.74 10.9 2.2 3 23 137 157 135 157 0.96 2 14 0.0015 0.14 13.2 2.8 1 23 265 287 265 287 0.99 3 14 5.5e-05 0.0049 17.8 0.6 1 23 293 316 293 316 0.96 4 14 0.027 2.4 9.3 4.7 1 23 321 344 321 344 0.94 5 14 6.5e-06 0.00058 20.7 0.1 2 23 483 504 482 504 0.97 6 14 0.00018 0.016 16.1 0.8 1 23 510 532 510 532 0.99 7 14 0.22 19 6.4 4.9 1 23 593 615 593 615 0.96 8 14 0.0016 0.14 13.2 1.3 1 23 650 672 650 672 0.95 9 14 0.00016 0.014 16.3 1.8 1 23 678 700 678 700 0.97 10 14 0.00046 0.041 14.8 2.1 1 23 709 731 709 731 0.98 11 14 0.00031 0.028 15.4 0.6 2 23 778 799 778 799 0.97 12 14 0.027 2.4 9.3 5.9 1 23 816 838 816 838 0.95 13 14 1.3e-06 0.00012 22.9 0.7 1 23 844 866 844 866 0.98 14 14 4.5e-07 4e-05 24.3 3.1 1 23 872 895 872 895 0.98
Sequence Information
- Coding Sequence
- ATGAATGAAAACATGGCGCCGGAAGTGGATCCATTGAGCAATTATAGCATAAATCCATTCCACAACTTTGAAGGTTACGAAAATTTACCGTACACTGAAAACGTAGTACCCTACACGTATCCCGTAAAAGTAGAACAATACCAAAATACATTGAACTATTACAATGCACCGAACACTAGTGAAAATAAGCATCTACCAGTAATAACCAATACCGTGCCTCCAAATAATGATAGCAACAACGAACAGATGAATCCGATCATAAACGACACCTTAACCATTAATGAAAACAATACAGACCTTGATATAAAGCCAGATCTAACAGGAAGCATCAATAAGAGAAGAATTAAAAAGGAAAGAAGCAAATATTTCTCTGAGAAAATAACGGAAAAGGATTTCCCCTTCTATGGGTGCTCTGTCTGTAATATATGTTTTAAAACATTACACGAACTAGACACACATGTTACGATACACAAAGATAGGATTACTAGTTACGATTTGAGAATAAAAAATCAATTAAAGAAAAGGAAATTAAAGAAAGAGATGAAGAAAAAGAAACAGAAGAATGTCGTCAAATTGGAAGCGGATGTAGATATTGAAATTAAACCGGAAGACGGGTACATTGGCAATGAAAAGGCATCAGACTTGATCAACAGTACGGAATCGGATAACCAAAGCTCGAAGGAAAATGAGAATGGAGTAATGAATGAGAAGAAAAATGATAATGTTGCAACAACGGATTCCAGTACGAGAGAACCATTGAATAAAAAAGAAATGCAAGATCTACAAAAGATATATAAATGTTTTGCATGTCAGAAACAGTTTACATTGAGTTATTATTTAAAGTTACACGTCAGATCACATACAGATGAAAAGCCGTACACGTGCGCAGAATGCGGCCAGTCCTTCATCACAGCCAGCAAGCTGGGGCGACACAATAAGAGATTTCATCTCGCGATCCGGTACCAGTGTCGGATATGTTATAGATATTTTTCAAGATTCGAATTCCTGACACGCCATTTTGATAAGAAACATCCAGACGATAAACTGGAAGGGGAACCGTACGATTACAATGCCATATTGCCATATTTAAAAGAACTGGAGGAACAGCTACGTGAAAAGTCAGAGAGTGAAAAGTCTAAGCCGAAATCGGAGGATTTGTGGTCGAGCGACTGGCCGAATATGGGGACAAGTGATGGTTTCAAGGATAATTTAGTTAAAGAAGAAGAGAAATTAGAATTAAAGATTGAAGAAGTGAAGGTCGATATGGATGAAGTTGATGTGAAACAAGAGGCGGAGTTTGAGGAGAAGAGCGAGGATCTAGATGACTTCAGGGACGATTTGAAAGATGAGAACAGCGCGTCCGACTCGGACTACTTCCCGTCGGGCACGTGCGCGGCGGCCCCCTGCCCGGCGTCCCCCGGGCCCCCCGGGCCCCCCGACCGGCTGCAGTGCGGCGAGTGCGGCAAGCGCGTGAGCAGCGCGTCGTACCTGCGCGTGCACGCGCGCACGCACAGCGGCGAGCGCCCCTACAAGTGCTACGTGTGCGGCGCGGGGTTCATCACCGCCAGCAAGATGCACAGACACGTGCTCACGCACCCGCAGTGCTGGGACGATGACGAAGTGAAGACGGAGAACTTAGACATTAAGATGGAACCGCTGAAAGATGGTGAAGACGTTGATGATAAGAAGAAATTAAAAATGAAGAAGGCCCTAGCGAAATTCTCGAAGAAGCCAAGGAGTTCGGATAAGAAGAAAAAGCTCTATCAGAGGCGACCACACGCTTGCGAGTTCTGTCAAAAGAGATTTCTACACCTGGAGACCCTGCAGGTACACAAGAAGTCCCACGAAGGCGAGTCCATAGTGTACAAGTGCACGTTCTGCCTCGACGAGCAGCAGGACGAGGCGACGCTGCGGGCGCACGAGGCGACGCACGACGGACCGAAGCCCTACCTGTGCACGATATGCGGGAAGGGGTACAAGAAACGGGAGACGATGATATACCACAGGAAGAACCACAAGCCGGAGAAGGAGTACATCTGCGACATCTGCACGAAGAGCTTCAACGCGCAGTGCAAACTGCAGCGGCACATCGTCAGCCACCGCGCCGACCGGTTCGTGCTGCGCTACGAGTGCCCCGTGTGCGCGCACATGTTCAACACCAAGTACCACGTGCAGATGCACCTCGCCACGCACCAGAAGGAGGGCCTGATCCAGGAGGAGAATCGCAACGAGATCCTGGCGATGGTGTTGCAAAACGCCCGTAAGATACCGAAAACGCCGGACGCGCCGGCCGCCCTCACCGACATCGTGCCGGCCGACGAGAGGAGTCGCGTGTGCAACATCTGCGGGGAGATCTTCCAGCATTTCTATTACCTGGAGGAGCATCTGAAGAGCCACGGCTCGAAAATTGCCGTCGAAGACAATGAAATGGCCAAGGAAAAAAAACACATATGCAAAATATGCAATAAAGGCTTCAAACTTCATTATTATTTAAAATTACATAGTTTTACACACACAAAAGAGAAGCCGTTCATTTGCCAACAGTGTGGAAAGGGCTTTATTACCAAAGGTAAGTTGAAAAGACATTTGGAGACTCACACGGGCTTGAAAAAGTACCAGTGTCACATTTGTTATAAGTTCTTCACGCGGCCCAGTTATCTAAGGATTCATGTTAGGACGATACACGGTACACAGGATTATAATTTTAGACTGGAGAAACAGTATGGGTTGTCGTCTGTACCACTTATGGGACACTCCGCTTGA
- Protein Sequence
- MNENMAPEVDPLSNYSINPFHNFEGYENLPYTENVVPYTYPVKVEQYQNTLNYYNAPNTSENKHLPVITNTVPPNNDSNNEQMNPIINDTLTINENNTDLDIKPDLTGSINKRRIKKERSKYFSEKITEKDFPFYGCSVCNICFKTLHELDTHVTIHKDRITSYDLRIKNQLKKRKLKKEMKKKKQKNVVKLEADVDIEIKPEDGYIGNEKASDLINSTESDNQSSKENENGVMNEKKNDNVATTDSSTREPLNKKEMQDLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCAECGQSFITASKLGRHNKRFHLAIRYQCRICYRYFSRFEFLTRHFDKKHPDDKLEGEPYDYNAILPYLKELEEQLREKSESEKSKPKSEDLWSSDWPNMGTSDGFKDNLVKEEEKLELKIEEVKVDMDEVDVKQEAEFEEKSEDLDDFRDDLKDENSASDSDYFPSGTCAAAPCPASPGPPGPPDRLQCGECGKRVSSASYLRVHARTHSGERPYKCYVCGAGFITASKMHRHVLTHPQCWDDDEVKTENLDIKMEPLKDGEDVDDKKKLKMKKALAKFSKKPRSSDKKKKLYQRRPHACEFCQKRFLHLETLQVHKKSHEGESIVYKCTFCLDEQQDEATLRAHEATHDGPKPYLCTICGKGYKKRETMIYHRKNHKPEKEYICDICTKSFNAQCKLQRHIVSHRADRFVLRYECPVCAHMFNTKYHVQMHLATHQKEGLIQEENRNEILAMVLQNARKIPKTPDAPAALTDIVPADERSRVCNICGEIFQHFYYLEEHLKSHGSKIAVEDNEMAKEKKHICKICNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRPSYLRIHVRTIHGTQDYNFRLEKQYGLSSVPLMGHSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00843735;
- 90% Identity
- iTF_01078417; iTF_01080920; iTF_01079252; iTF_01508265;
- 80% Identity
- -