Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992250.1:4792539-4807880[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 6.9e-05 0.0061 17.5 2.2 1 23 415 437 415 437 0.97

2 20 0.0066 0.59 11.2 1.1 1 20 443 462 443 465 0.94

3 20 2.7e-05 0.0024 18.7 4.4 1 23 484 506 484 506 0.98

4 20 0.00016 0.014 16.3 4.7 1 23 512 534 512 534 0.99

5 20 3e-05 0.0027 18.6 5.3 1 23 540 562 540 562 0.97

6 20 9.8e-06 0.00086 20.1 7.3 1 23 568 590 568 590 0.97

7 20 6.1e-07 5.4e-05 23.9 2.9 1 23 596 618 596 618 0.97

8 20 8.7e-05 0.0077 17.1 6.7 1 23 624 646 624 646 0.97

9 20 0.0002 0.018 16.0 5.6 1 23 652 674 652 674 0.97

10 20 4.2e-07 3.7e-05 24.4 1.9 1 23 680 702 680 702 0.98

11 20 8.3e-06 0.00073 20.4 7.7 1 23 708 730 708 730 0.98

12 20 6.8e-06 0.0006 20.6 6.6 1 23 736 758 736 758 0.98

13 20 7.2e-06 0.00064 20.5 6.5 1 23 764 786 764 786 0.98

14 20 8.1e-06 0.00071 20.4 6.4 1 23 792 814 792 814 0.97

15 20 6.4e-06 0.00056 20.7 7.2 1 23 820 842 820 842 0.97

16 20 2.6e-06 0.00023 21.9 6.0 1 23 848 870 848 870 0.98

17 20 0.00012 0.01 16.7 10.0 1 23 876 898 876 898 0.97

18 20 1.7e-06 0.00015 22.5 5.2 1 23 904 926 904 926 0.98

19 20 0.00047 0.041 14.8 0.3 1 23 933 955 933 955 0.96

20 20 0.013 1.1 10.3 5.3 1 23 966 988 966 988 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	6.9e-05	0.0061	17.5	2.2	1	23	415	437	415	437	0.97
2	20	0.0066	0.59	11.2	1.1	1	20	443	462	443	465	0.94
3	20	2.7e-05	0.0024	18.7	4.4	1	23	484	506	484	506	0.98
4	20	0.00016	0.014	16.3	4.7	1	23	512	534	512	534	0.99
5	20	3e-05	0.0027	18.6	5.3	1	23	540	562	540	562	0.97
6	20	9.8e-06	0.00086	20.1	7.3	1	23	568	590	568	590	0.97
7	20	6.1e-07	5.4e-05	23.9	2.9	1	23	596	618	596	618	0.97
8	20	8.7e-05	0.0077	17.1	6.7	1	23	624	646	624	646	0.97
9	20	0.0002	0.018	16.0	5.6	1	23	652	674	652	674	0.97
10	20	4.2e-07	3.7e-05	24.4	1.9	1	23	680	702	680	702	0.98
11	20	8.3e-06	0.00073	20.4	7.7	1	23	708	730	708	730	0.98
12	20	6.8e-06	0.0006	20.6	6.6	1	23	736	758	736	758	0.98
13	20	7.2e-06	0.00064	20.5	6.5	1	23	764	786	764	786	0.98
14	20	8.1e-06	0.00071	20.4	6.4	1	23	792	814	792	814	0.97
15	20	6.4e-06	0.00056	20.7	7.2	1	23	820	842	820	842	0.97
16	20	2.6e-06	0.00023	21.9	6.0	1	23	848	870	848	870	0.98
17	20	0.00012	0.01	16.7	10.0	1	23	876	898	876	898	0.97
18	20	1.7e-06	0.00015	22.5	5.2	1	23	904	926	904	926	0.98
19	20	0.00047	0.041	14.8	0.3	1	23	933	955	933	955	0.96
20	20	0.013	1.1	10.3	5.3	1	23	966	988	966	988	0.99

Sequence Information

Coding Sequence: ATGAATCCTGATCATCATAATATAAACACGGGTGGTGGCCAACCTCCTGGCAATTCTGAGGCTCAGAATCAAAGAGTGCAATCAACGCAGCAACAGCAGCAGGCTCAAGCTAATAACTTGACTCCGACAACATCTGCTACTGATTTGAGAGTTAACTCAGCGGCGGTAAACGTTGCTTTGTCAAGCGTGGCGAAATACTGGGTGTTTACAAATTTATTTCCCGGTCCAATACCTCAGGTTTCCGTGTATGGGTTACCCACGGGTGCGAGAATTGAAAATGGGAAGCCTGTACAGGATCTTGGACAGGCACATGCAAGTCTTCTAAATGGAGATCCTAATATTATATTAGGACATGCAGGACAACAACAAGTTACTGTTTCGGCAGGGGGCCAACAAATTCCTGTTTCACAGATTATTGCAAATCAAGCAACACAAGGCCATGAGTCACTGGTGGCGCACGGCGCGGCCGAGGGCGGCGGCGCCACGCTGTCGGTGGCGGGCGCGCAGACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACATAACATTGATATGGTAAATCACGTGGGCCATCACTCTCAGCAACATATAATGCAGCAACAGCTGATGGCTGCCACCCGTCCAGAACATTCTAATCAGCAGATACAATTGACGGTGAGCGAGGACGGCATCGTGACCGTGGTGGAGCCGGGCGGCGGCAAGCTGGTGGACAAGGACGAGCTGCACGACGCCATCAAGATGCCCAACGATCACACGCTCACCGTGCACCAGCTGCAGCAGATCGTGGGCCACCACCAGGTGATAGACAGTGTGGTCCGCATCGAACAAGCCACAGGCGAGCCGGCCAACATTCTCGTGACGCAGAACCCGGACGGCACCACATCCATAGAGACCAGCGCCGCCGACCCGCTCATTGTAAAAGACGAGAAAAACGTCTCCAAGATTGAGTCTACGCAGTTCGCGATACCCGCCGAGATTAAAGATATCAAGGGAATTGACTTAAAGAGTGCAATGGGTATGGAAGGGGCGGTGGTCAAAATATCTACTGGGACAGAACATGATCTTCACGCCATGTACAAAGTTAATGTAGAGGATCTTTCGCAATTACTTGCTTATCACGAAGTATTTGGAAAACTTAATTCTGAAGGCCAGCCACAAGCAAAGGTCATCAGCGAGGTGGAGGTAGAGGCGGGCACGAGCGCCGCGCTGTCGGAGGCCGAGTCGTCGCCCGGACACCACTCGTGCGACATCTGCGGGAAGATCTTCCAGTTCCGATATCAGCTCATAGTCCACAGACGATACCATGGAGAGAGTAAACCATTTACATGTCAAGTGTGTGGTTCTGCGTTCGCCAATTCAGTAGAACTTTCGAAACACGGAAAATGTCATCTCGCCGGTGACCCCGCCGAGCGCCAAGCGAAACGATTGGCTCAAGACAAACCGTACGCTTGCTCCACTTGCCATAAGACATTCGCACGTAAGGAACATCTCGACAACCATGTCAGGAGCCACACCGGGGAGACGCCATACAGATGCCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTGAAACGCCGCACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCACATACAAATGACACTCCGTTCAGATGTGAACTGTGCGGCAAGTCCTTCACGAGAAAGGAACACTTCACCAATCATATACTGTGGCATACGGGTGAAACTCCACATCGCTGTGACTTCTGCTCCAAGACATTTACCCGTAAAGAACACTTACTTAACCACGTGCGCCAGCATACGGGCGAGTCTCCTCATCGGTGCAACTTCTGCGCCAAATCCTTCACACGGCGCGAACATCTTGTAAACCACGTCCGCCAACATACGGGTGAAACGCCATTTCAATGTGGTTATTGTCCTAAAGCATTCACTCGAAAAGATCATCTTGTGAATCACGTCCGCCAGCACACTGGGGAATCCCCTCACAAATGTTCCTATTGCACAAAGTCATTCACGCGTAAGGAACATCTAACCAACCACGTACGGCAACACACGGGCGAGTCCCCCCATCGGTGTACATACTGCGCGAAGTCCTTTACAAGAAAAGAACATCTAACTAACCATATAAGACAGCATACGGGGGAGACTCCTCACAAGTGCACGTATTGCTCTCGCGCCTTCACGCGGAAGGAACACCTCAACCAACACATCAGACAACATACCGGGGACATGCCACATACCTGTTCATATTGTAACAAGAGTTTCACGAGGAAAGAACATCTTGTCACGCATGTTCGACAACATACTGGAGAGACACCATTCAAGTGTACATATTGTTCGAAGTCGTTTTCTCGAAAAGAACATCTCACCAATCACATACATCTTCATACAGGCGAGACGCCACATAAATGCCCCTTCTGCACGAAGACTTTCTCGAGAAAAGAACATTTGACTAATCATGTTAGAATACACACTGGTGAGTCTCCTCATCGATGTGAATTTTGTCACAAGACATTCACGCGTAAAGAACACCTTACGAATCACCTCAAGCAGCACACTGGAGACACACCTCACACTTGCAAAGTGTGTTCTAAGCCCTTCACGAGAAAAGAGCATCTTATTACGCATATGAGGTCACATAGTTGTGGGGAAAGGCCGTACAGTTGCGGTGAATGTGGAAAATCGTTCCCATTGAAAGGCAATTTGCTATTTCATGAGAGATCACACAACAAGAGTGCAAATTCAGCAAATAAATCTTTCCGATGTGAAATTTGCTCAAAGGAATTTATGTGCAAAGGTCATTTAGTATCGCACAGACGAACGCATACGGATGCAGTTGAAAATGCAGTTAGTGCGGAACCGGCAACCGAAGGCGAGGACTGCGGAGACTGCAATAAATGTGAGAAAGATGTGCCAGAGAGAAAACATGATACAAGAGCATCATCAGAAAGTAGAGCTACTGAGACAAATGTAGCACAAAATCAAACGACTAGTTCAGCAGTTATGCAAATAACCAGCCAGCAAGTCCGAACCGGAACTGCTACCAGTGTAGCAAGCGTGGCAGCTGGCACTTTCACTCACACAACAAATACCCAACACCATACTGGTACAACCATAGCACATCATCCAGTCACAGTGAATTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGNSEAQNQRVQSTQQQQQAQANNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQAHASLLNGDPNIILGHAGQQQVTVSAGGQQIPVSQIIANQATQGHESLVAHGAAEGGGATLSVAGAQTQQVPNNRVEFVQHNIDMVNHVGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKDELHDAIKMPNDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLIVKDEKNVSKIESTQFAIPAEIKDIKGIDLKSAMGMEGAVVKISTGTEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQPQAKVISEVEVEAGTSAALSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANSVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRQHTGETPHKCTYCSRAFTRKEHLNQHIRQHTGDMPHTCSYCNKSFTRKEHLVTHVRQHTGETPFKCTYCSKSFSRKEHLTNHIHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHTCKVCSKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKSANSANKSFRCEICSKEFMCKGHLVSHRRTHTDAVENAVSAEPATEGEDCGDCNKCEKDVPERKHDTRASSESRATETNVAQNQTTSSAVMQITSQQVRTGTATSVASVAAGTFTHTTNTQHHTGTTIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00247403;
90% Identity: iTF_01078391;
80% Identity: -