Npol007647.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- MBD-R2
- Assembly
- GCA_905220585.1
- Location
- HG992246.1:11636785-11647795[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-14 5.2e-11 42.5 0.0 5 69 752 815 748 818 0.93
Sequence Information
- Coding Sequence
- ATGGCTGTTAAAAAATGTTGTGTAGAAAACTGTAATTCTTCCTCAACAAGAAAAGAAGATATTGGTGTAACATATCACAAGTTTCCAAAAGATAAGACATTACGTGAAACATGGGTATTAATTACACGTTATAGGCACACTAACACTGCACACTGTAGTTATGTGTGCTCTCGACACTTTTGTAAAAGTGATTTTCAAATTTATCAGGACTCGAAATATGTTCTTAAGTCAGATGCTGTACCATCAATATTTTCTTGGGCCATGACAGATACAAAAATGGAAACAAACCCTACCAAAGATGTTGACGAAAAGTTAAACTTATCTACCAGCAGTAAAGAATCGGAGAGTGAAAATGTGGAGGCTATAAAAAAATATATAGAAGATCAAGAAAAAGAGATCAAGGAAAGGGAGAGTCAGAAAGACAATGACAAAGCTCTAGAGAAGATAGAAGCGGAACAAAAAGGAGATGATATAGTCAATCAAATGGAAGTGATAGACAGAGAAGAACCTATTGTAATAGCTACAAGTGTTATGGATATGATATTAAGTGAATCAGAAGCTAAAATTGCAAATAATAAAGACATTAAACCTATTACAAAAGATAGCTTAAGTTCTAAAGATAAAGGTAGTAGTAGTATGGCTTTATCAGTGGGCTCAAAGGTTGAGGTCAAGGATTTTGGTGAGATCTGGTATGCGGCTGCAATCGCTGAAGTTGATTATGATGAAATGGAAGTATTAGTACACTATAATCCTGTATCAAACAAGCATGATGAATGGATAAATGTAAGTAGTCCTAGGCTAAGGCCGATGACTATTACTACTTCACCCATTCCTTCAATATCTTCAGCTGTCCAAAATCCAACACCTACAGACAATGCTGAAATCAAGAACGAAGTTAAGCAAGAAGACAAAACAAAAATTGAATTTGTAGTGGGAGAAAGATGTTTGGCACGTTGGAGAGATAATCGAAGATTTGTCGCTACCATCTCTAATGATTTGGGAAATGGCCATTACGAGGTTATATTTGATGACGGTTTTCAATGGAAGTGCAGTACATCAAGGTTATATAAATTGAAGTCTTCTTCAGGAAGACCAGGAAGTTCTGAGTGTTTAACTGTTGACACTTCTGCCTCCTCTGCCGCATCAACTCCATCTCCAACTCTAGCTGGTGCTGGACCTACTGTTGCATCTTCTCCAAGTGCTCACACAACATTTCCTACCTTCCATACACATCTCTTTGATCCCACACGTGATTATTTAGGTTCCAAGAGTGAACGTCGCGAAATGAAAAGAAAATTAAATATAAAAGAAATTTTCAATATTGGCCAGAAAAAACAAAGGAAGAAAACAAAATTAACTGAAGAGAAAGCCGATATTAAGATTGTGAGAGACAAGAAACCTAAAATATTGAAAAGGAAAATTATACCTGAACCCACAGAGGAAGTTAAACTTGACGTCAAGATGGATATACCAGATGCAGTAGCTTCCATCATAGGAACTGTTGCTAAAGAAGATGTTGATGAATCAATAATCAGTGATGAAAAAACTGAGACTGTTATACCACAATCACCTGAAATTAAATCTGAAGGAGTCAAGGAAGAACAGGAAATTGACAAAGTTAAGAAAGAGGAACCGGTCGATATAAGTACAGTGGGCAGTTACTCAGATCTTGTAATACCTAGTGATTTAGGTTTGGAGTCTGATATATACGTTGAACCGGTCATAGAGGAAGAAGTGAAATTGGAAAAGTTCGAAAAACCAGATGATAGTAAACAAGAGGTTATCGAGAAAATGAAAGTCGTTATAAACAAACTAGAAGATGGCTTGCATCAAATGGAAAAGGCAGATTCGCCTAAACTAGTCGTGGAAATAGAACCGCTCGTAGAAACCAAGCCAGTAAGCGAAGTTGATAAAGAAGTGTATACAGAAAAAGAAAAGACTAAGAAGCTATCTAAGATAAAGAAAAATAAGAAAATGAGATTGTTACAGGAGAAGAAGGTAAAGAAGCAGGTGGAGAAGGTGAAAAATGAGTTGGAGGAGATGAAACGGCAAGTCGAGGAAATGAGAAAACAAATGTTGTTGAAGACTGAGGAATTATCGACGTCGACCAGGCCTCTTGAAATGCCGGAAAGTTTTTTGTTACCGGGTGAATGGTGTTGTAAGTGGATCAATGGTCAGCCAGTTGGTACAGTCAGTGAAATTGAAGCCGAGGTTAAGGATGGTAGCAAATTACCATTACCACGTAGAAGTGTGCAGGTCGAAGATAAAAGATTACCTCCAGGTTGGACGAAGCACATGGTACGACGAAGTCTGGGGCAATCGGCTGGGAAATGGGATGTGGTTTTAGTTGGACCAGATAACCGACGTTTCCACACTAAAACTGACATGCGGGCCTTTTTGGAACACGTTCCGGATGAATCGTTGAAGTCTTACGAATTTGCACTGTTAGATTTCGGTGTACATCTCAAGTTGTCTAGACGTATGGGATGGGTCAGCCATACCGAGGAAGGGACGCTACCGCCGACTAGTGTAAATACACTGTCGCCGTTGGTTAAGAGGAAAAAAATAAGCCACAAAAGAAAGGAGGATAAGAAAGAGAGGAAACGCAAAAGGCAAAAGATTATATCGAATGATACACCAAGTACGAGTAGTCAAGCTTTATTGGATTTGTCAGAAGCGGGAACGGACATATCCTTCGAGAATCCGCCCCTAGAGGATGGTTATGTATATGTTGGATCGCTAAAAGTCCAGATCATAGAAAACTTGCTTCGCTGCCCAGCGGAAGGTTGTTACAAGAACTTCAGAAATAATACATTATTGCAAATGCACATAAAGCACTATCACCGCGAAATGAGGAAGATGTTGGGAGCAACACCTAAAGTATTAGATTTGGCCAGAAAGAGAACGAAACCAACGAGTATCGAACCGCCGAAGCCACGATATGAACCAGAATCAAAGATCATCAAGGTAAAATTACCGAGACTACCGAAGCGCATAATTGAAGAAACGAAAATTGAAATAAAACCTAAAAAAGAGGAATCGCCCTCCGAACTCCATATCGATATACCAGTCGCACCTACAAGCAAAACAAATTCACCAGTACCAAGATCTCAAGATTCACCAAAACTACGTCAAGCACTCGCAAATAAACCGGTGAAACGACCAAAAGTTTTGCTCCCCGTTCGGAGACCAGATCCGGAACCGATTGTAGAAAAAGAAATCGAAATACCAACTCTCGATTACGAGGAAGTCGCGACGGAAAATGAATTTGAAAGGCCAACGGAAAGTTTGGATTTTGAATCGGAAATTTCTGCTCATACTGTTACGAAGGCGCTGGATGAAACACGAAAGAAGTCTGAGAAAAAACGTAAATGTTTTTCGACAATATCTAAAAAACCGATGAGTGAGGAAGATGAGTGGTATGGTGGTAATTCGGATGTGGATACCAGATCGAGCTGTCCGGGTTCCGGGACGCCGGACTCTAAAACCATGGACAAGGCAATGACTCAGCAAGCGGTGTCATCGGAGTCTAATAATGAAGACCAGAAAGAAAACAGCACGTACATTTATACTGAAACCGGCGAACGAGTGAAGATTGAGCGCATGAAACGCGAAGAAATAATAAGCTGCCACTGCGGGTTTCGTGAGGAGGACGGGCTGATGGTGCAGTGCGAGCTGTGTCTGTGCTGGCAACACGCGCTCTGCCACAACATACAGAAGGAATCCGAGGTCCCTGACAAGTATACCTGCAGTATCTGCCTTAACCCACGGCGCGGTCGACGTTCGAAGAGATTCCTCCACGACCAGGATCGCCTATACGAGGGGCTCCTCCCGGGGGCGAAGCCCTGCGAATCACTTCGTAGATCGCACGAGCTATCTGGAAATTTGTTGCGGATACAGGATGCCTTGCACGCCCTTCGAGTCAAGTACTATGTCGCTACTAAAAAGGATCATCCGAAGTTATATCTCTGGGCCAAAGATTGGGAGAATGCTGAAGTGACCTTAACACAAGAGAGACTCACCTCGGACTACTCGGACCTCAGTATAATGTTGAATAATATTGGCAAGGAGAACTTACCAGTGAAGCCGGAGGAAGTTAAAGATGGCCATTTGGACATAAGGACGCCTATCATTGATGACCCTGATCAAGATAGATTCACTCAGTCATCAAATTCTCTGCTAACTTTGACGACGGCGTTGTCCAGTCCGAGCGGTGGACCGTCTCTCGATTTACCGATAACTACATCAGAACTAGAACGGCTGGCGAAATCTGTCCAAGAACAAGAAGTGCCGAGAAACGTGATGGTGCCCCAGCCGGAAGCCGCGATAGAGAACGGCGCGTGTCGCGAGAGGCTGCTGCGCCACGTGCAGCGCTGCCAGGCGCTCATTGACGCGAGGCTCGACTCATTTGAAGCACAGGTTGCTGAACTGGAGTCCCAAGATCCGTCCTTTGAAGATGATGAAACAGCTGATTACTTCCCACGAACTAAACAGACCATACAAATGCTAATGCGTGACCTGGATACCATGGAAGAACTTGGTATTATCACTTAA
- Protein Sequence
- MAVKKCCVENCNSSSTRKEDIGVTYHKFPKDKTLRETWVLITRYRHTNTAHCSYVCSRHFCKSDFQIYQDSKYVLKSDAVPSIFSWAMTDTKMETNPTKDVDEKLNLSTSSKESESENVEAIKKYIEDQEKEIKERESQKDNDKALEKIEAEQKGDDIVNQMEVIDREEPIVIATSVMDMILSESEAKIANNKDIKPITKDSLSSKDKGSSSMALSVGSKVEVKDFGEIWYAAAIAEVDYDEMEVLVHYNPVSNKHDEWINVSSPRLRPMTITTSPIPSISSAVQNPTPTDNAEIKNEVKQEDKTKIEFVVGERCLARWRDNRRFVATISNDLGNGHYEVIFDDGFQWKCSTSRLYKLKSSSGRPGSSECLTVDTSASSAASTPSPTLAGAGPTVASSPSAHTTFPTFHTHLFDPTRDYLGSKSERREMKRKLNIKEIFNIGQKKQRKKTKLTEEKADIKIVRDKKPKILKRKIIPEPTEEVKLDVKMDIPDAVASIIGTVAKEDVDESIISDEKTETVIPQSPEIKSEGVKEEQEIDKVKKEEPVDISTVGSYSDLVIPSDLGLESDIYVEPVIEEEVKLEKFEKPDDSKQEVIEKMKVVINKLEDGLHQMEKADSPKLVVEIEPLVETKPVSEVDKEVYTEKEKTKKLSKIKKNKKMRLLQEKKVKKQVEKVKNELEEMKRQVEEMRKQMLLKTEELSTSTRPLEMPESFLLPGEWCCKWINGQPVGTVSEIEAEVKDGSKLPLPRRSVQVEDKRLPPGWTKHMVRRSLGQSAGKWDVVLVGPDNRRFHTKTDMRAFLEHVPDESLKSYEFALLDFGVHLKLSRRMGWVSHTEEGTLPPTSVNTLSPLVKRKKISHKRKEDKKERKRKRQKIISNDTPSTSSQALLDLSEAGTDISFENPPLEDGYVYVGSLKVQIIENLLRCPAEGCYKNFRNNTLLQMHIKHYHREMRKMLGATPKVLDLARKRTKPTSIEPPKPRYEPESKIIKVKLPRLPKRIIEETKIEIKPKKEESPSELHIDIPVAPTSKTNSPVPRSQDSPKLRQALANKPVKRPKVLLPVRRPDPEPIVEKEIEIPTLDYEEVATENEFERPTESLDFESEISAHTVTKALDETRKKSEKKRKCFSTISKKPMSEEDEWYGGNSDVDTRSSCPGSGTPDSKTMDKAMTQQAVSSESNNEDQKENSTYIYTETGERVKIERMKREEIISCHCGFREEDGLMVQCELCLCWQHALCHNIQKESEVPDKYTCSICLNPRRGRRSKRFLHDQDRLYEGLLPGAKPCESLRRSHELSGNLLRIQDALHALRVKYYVATKKDHPKLYLWAKDWENAEVTLTQERLTSDYSDLSIMLNNIGKENLPVKPEEVKDGHLDIRTPIIDDPDQDRFTQSSNSLLTLTTALSSPSGGPSLDLPITTSELERLAKSVQEQEVPRNVMVPQPEAAIENGACRERLLRHVQRCQALIDARLDSFEAQVAELESQDPSFEDDETADYFPRTKQTIQMLMRDLDTMEELGIIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01507281;
- 90% Identity
- iTF_01079959; iTF_01078229; iTF_01078271; iTF_01079125; iTF_01079077; iTF_01080736; iTF_01080784;
- 80% Identity
- iTF_01079959;