Npol022102.1
Basic Information
- Insect
- Nymphalis polychloros
- Gene Symbol
- clz9
- Assembly
- GCA_905220585.1
- Location
- HG992260.1:3368827-3370947[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-08 3.3e-05 24.0 0.0 6 38 20 52 18 57 0.88 2 2 5.7 5.7e+03 -2.4 0.0 21 29 357 365 357 366 0.82
Sequence Information
- Coding Sequence
- ATGGTTCGAACATTCAAACGCAAAACGGAGAGAACTTTCATCGATGAAGTTTCTGTAGCTTCTGCGATATCTGACGTGTTGAAAGGAAAATTATCAATAAGAAAAGCAGCCGATAAATATAATTTAAAACCTGCAACTCTACAGCATAGGATCGAAAAAAAGAAGAATAAAGACGGCGAAGGCGTGAGTTTTTCATCTAAGTATACCTCCAAGCAAGTATTTACAACCGAACAAGAAGACCAACTAAATGCTTATATAATAAAATGCAGTAAAATGCATCATGGGCTTACATTAACTAAAGTGCGGCAGCTTGCTTACGAATACGCTAAAAAATTGAATTGCAGCTATCCCTCATCTTGGGATGTCAATAAAAGTGCTGGCTTAGATTGGACATATGGTTTTCGTAAGAGAAATAAAAATATTAGTTTAAGGAAACCTGAAAACACAAGTGTTGCCCGATCATTTTCATTTAATAAGACTGCCGTTGAAACCTTTTTTAATAATTTAGAAGATGTTCTCGCAAGATTTAATTTTACAGCTGACCGTATTATTAATTTCGATGAAACCGGCATTACAACGGTTATGAATACTCCAAGGATACTGGCAGAAAAAACTCAACGTCAAATCGGCCAAATTGTTTCTGCAGAGAGAGGCGAGTTGGTGACATTTGGAGGAATAATTACTGGAACTGGCAATAATATTCCCCCTGTGTATGTGTTTCCCAGGGTTCATTACAAAAGCCATTTTTTAAATGGTGCTCCTGAAGGGTCTTTGGGCTTATCGTCTAGATCTGGTTGGATAAATGGTGAATTATTTATAGAGGTTCTTAAACATATTCAAAAACACACAAATAGTACAAAGGAAAGACCGATTCTTCTAATTTGTGACAATCACGAGTCACATATTTCAGTCGAAGCAATTAATTATTCACGTGAAAATGGAATTGTTTACTTATCGTTTCCTCCACACACATCCCACAAACTCCAACCTCTTGATGTCGGTGTTTTCGGTCCGTTTAAAGCAAAACTCAAGGTAGCCTTCAATGACTGGCACATTAATCACCCTGGGAAAGCGTTAACTATTTATGATATTCCAAGTATTTCTAAGTTGGCTTTTTTTGAATGTTTCAACGCAAAAAATATTACGAGCGCATTTGCTAAGCCTGGAATCGTGCCATTTAATAAATTGGCATTTTCTGAAGAGGATTTTTCTCCTTGTGACGTTTATAGCAACCAAGAATCTCAAAATGATCCTTCAAATGATTCTAGTGTCAATCCTATTGATCTCGAATTAACGATAGAGAGCGAGCAATGTGTAACACCACCTCCTACTAGAGAGCCACCAAATATCATGAATGATTTTGAGTTACATAATATACCTTCCACATCAAGAGCTTCTGATGGAATTAATGAAACACTCACAGCCAAACCATGCATAACTCCTGAAGTTGTAAGGCCTTATCCAAAAATTTACCGAAATAATCCAACCAGAAAAGGAAAAGGAAAGGGTAAATCGCGAATTTACACAGATACCCCAGAAAAACAAAGAATAGAAGAACTGCAAAGAGCTAAGGATGAAGCAAACCTAAAAAAAGAACAACGAAAACGCGCAAAAGATCTGAAAACTGCTCAAAATTTGCTGAGCATAACTGTTAATCCCATTAAGAAACCAAATAAAAGGACAAGGGCTATATTTATGGAATCAGACTCTTCAAACTCTTCTGCTACTAATTTATTACAAGAATCATTCGATTCTGAAAGATCTACCATGGAATTATCTGACGATGATATTGTTAATACTGCCCCACCTGCAGCAAATGATCTTCATGATGGTGACTATGTTATAACAAAGGTAATTAACGTAGGAAAGAAGCATTTTAAGCATTTTGTTGGAAAAATTGTGTCAAGATACCCCGATAGCCAGAACGACTTTCTAGTCTCTTTTTTAAAGCTTAAGCCGACTGGAACTTTTGTGTTCCCTGATATAAAAGACGAAGCTTCGGTTAATATTTCTGATATTGTGCTAAAGTTACCAAATCCTATAGTAAAGAAAGGCACTAGTAGAACAGCTTCTCTATTCAATTTTAAGATAAATTTGTCACCTTACTACATTTCAATGTAA
- Protein Sequence
- MVRTFKRKTERTFIDEVSVASAISDVLKGKLSIRKAADKYNLKPATLQHRIEKKKNKDGEGVSFSSKYTSKQVFTTEQEDQLNAYIIKCSKMHHGLTLTKVRQLAYEYAKKLNCSYPSSWDVNKSAGLDWTYGFRKRNKNISLRKPENTSVARSFSFNKTAVETFFNNLEDVLARFNFTADRIINFDETGITTVMNTPRILAEKTQRQIGQIVSAERGELVTFGGIITGTGNNIPPVYVFPRVHYKSHFLNGAPEGSLGLSSRSGWINGELFIEVLKHIQKHTNSTKERPILLICDNHESHISVEAINYSRENGIVYLSFPPHTSHKLQPLDVGVFGPFKAKLKVAFNDWHINHPGKALTIYDIPSISKLAFFECFNAKNITSAFAKPGIVPFNKLAFSEEDFSPCDVYSNQESQNDPSNDSSVNPIDLELTIESEQCVTPPPTREPPNIMNDFELHNIPSTSRASDGINETLTAKPCITPEVVRPYPKIYRNNPTRKGKGKGKSRIYTDTPEKQRIEELQRAKDEANLKKEQRKRAKDLKTAQNLLSITVNPIKKPNKRTRAIFMESDSSNSSATNLLQESFDSERSTMELSDDDIVNTAPPAANDLHDGDYVITKVINVGKKHFKHFVGKIVSRYPDSQNDFLVSFLKLKPTGTFVFPDIKDEASVNISDIVLKLPNPIVKKGTSRTASLFNFKINLSPYYISM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063523;
- 90% Identity
- iTF_00736567; iTF_00931167;
- 80% Identity
- -