Basic Information

Insect: Nymphalis io
Gene Symbol: RREB1
Assembly: GCA_905147045.1
Location: LR989917.1:5086052-5114024[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.9 2.6e+02 2.9 1.2 1 12 93 104 93 116 0.79

2 12 1.3 1.2e+02 4.0 0.2 1 12 151 162 151 172 0.83

3 12 0.017 1.6 9.9 0.1 1 23 298 320 298 320 0.97

4 12 0.00093 0.084 13.9 0.4 1 23 329 351 329 351 0.99

5 12 0.00057 0.052 14.5 2.0 1 23 357 380 357 380 0.97

6 12 0.0023 0.21 12.6 1.6 1 23 731 754 731 754 0.96

7 12 0.00019 0.018 16.0 1.3 2 23 947 968 946 968 0.97

8 12 0.02 1.8 9.7 5.3 1 23 974 997 974 997 0.97

9 12 0.067 6.1 8.0 0.8 1 23 1028 1052 1028 1052 0.90

10 12 0.3 28 6.0 0.2 1 23 1074 1097 1074 1097 0.93

11 12 0.018 1.6 9.8 0.3 2 23 1137 1158 1136 1158 0.92

12 12 0.022 2 9.5 5.3 1 23 1164 1186 1164 1186 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.9	2.6e+02	2.9	1.2	1	12	93	104	93	116	0.79
2	12	1.3	1.2e+02	4.0	0.2	1	12	151	162	151	172	0.83
3	12	0.017	1.6	9.9	0.1	1	23	298	320	298	320	0.97
4	12	0.00093	0.084	13.9	0.4	1	23	329	351	329	351	0.99
5	12	0.00057	0.052	14.5	2.0	1	23	357	380	357	380	0.97
6	12	0.0023	0.21	12.6	1.6	1	23	731	754	731	754	0.96
7	12	0.00019	0.018	16.0	1.3	2	23	947	968	946	968	0.97
8	12	0.02	1.8	9.7	5.3	1	23	974	997	974	997	0.97
9	12	0.067	6.1	8.0	0.8	1	23	1028	1052	1028	1052	0.90
10	12	0.3	28	6.0	0.2	1	23	1074	1097	1074	1097	0.93
11	12	0.018	1.6	9.8	0.3	2	23	1137	1158	1136	1158	0.92
12	12	0.022	2	9.5	5.3	1	23	1164	1186	1164	1186	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCCGCCAGTGCATCCGCGCCTCCCGCGGCCGAGCCTCCTGCATCCCAACAAATCAAAACAGAAGTCATCAGCGAGGCTAAAGTCGAAGCGGATAATCAGGAAGAGGAGGACATGAAGATTGAGCATGAGACGCGCGCGACGCGCACCACTAGCATTGATAGCGATAACAGATCAGATAGAAGCGAAGAAGAAGATTGTAGACGCGCCCGAAAGCGAGCCGCTTCAACTTCACCTTCGCCTATTCCACTGGACAAGAGAACCGCTCGATTCGAATGCCCCAAGTGTTTCCAGCGTTTCGATTCAATAAATGCCTTTGATTTCCATCGCTTCACAGCGCACGGGGATGATACAAGATCCGGGTATGACGATTACGTAGATTACTCCGCTAAAAAAATTCCAGATATGCTACGAAGTTCACACGTATCTATCTCGGAGCAACGCTTTCGATGCGAATATTGTTCACGCGATTTTCCATCAGGACAAATCTTGGATATTCACAGAAAAACGTGTACATCGTCTACTCGAATATCCAGCCCTGATCGTGATCGGAGGGAAGATTTTTTTGCTAAACTGGATCTAAGAAATAGGTCTTTTGGCATACCAGGTACCTTAACTCCACCGATGGATCGATTCACGCCTAAATTTGATGATCATCTTAATAATGGAATAAGGCATATAGATGCTGCCAGAGACCTGGCTGATATTCAATCCATACTTAACGTCACTTCTGCTGGAAGTCTTTTAGAAAGACTGACGGGGACGAGGGTTGCATTGGAAAGTGCAGTATTAACGCCTCCCGACACAATCGTTAAAGAACGTGAACAGGAAGAAACACAAGATAATTTCGCAGCAGAGTTCAGGCGAATGAAATTGCGAGGTGAGTTCCCTTGCAGGCTGTGTCCCGCTAAATTTCCAAACCTCCGTGCTTTAAAAGGACACAACAGAGTACATCTTAGTGGAACTGGTCCCGGCCCGTACCAGTGCAACATGTGTCCTCATGCATCTTTGGACAAAGCAGCTCTTGTTCGGCATATGCGGACACACAATGGCGACAGGCCTTATGAGTGCGCTGTATGCAATTACGCATTTACAACAAAAGCCAATTGTGAACGTCACTTACGTAATCGTCACGCCAAAGTGACAAGAGAGGACGTGAAGCGATCGATTATTTATCATCCATCAGAAGATCCTAATAACGACGAAGTAAATTCAAAACTTGCTCGAGAAGAAGTTAAGAGATCGTTAGCATTCCACACGCCAGAAGTAGAAAGACGCAGCGAACCCACAGTTCGTAGTACAACACCACTGACACATTATAATCCCAGTTTTATAACAGAGAGACATCCAGTAACTTCGCTCACAAAAGCTTTACCCGATACACCCGCTTTAACCCCGAGAGAATCAGACCCGCCAATGCCCAGAATCAAAGTTAAGGGTATCGGACAACTCACGCAAATACCTGAATTCAGACCTCCCGATCTTTCATTTAAGACCAATGATCTACCAGAAACGTATAATGATGATGCTCCAGTAGACCTTAGTACGAGTGACAACAATAGTTGCGATGTGTTAGATCTTAGCAAGAAAAAACGCGATACAGATGATGATGAACCTAAGGCACCATCGCGTCCCGCATTCGACAACTCTGCGTCTGTTGCGGCATCAGCAGCCGCTACGGCTTACGAAAAAACAAGATTAATTCTCGCTCAGCAAAGACTTTTTGAGAACTCTCTACCTAAACTTGATCCTTCTTTTTATGCAACTCAACTGTCTCAACTTTACGCCAGTGCTGTACCTGGCCTGCCAGGTTTACCCATCCCACCTTCATTTCCTATCAACCCATACTTTCTACAGACCTCTTTTTTTCCTCACCCAACCGATTCTCAAGAGATAACCGAAATGAAACAACGTCTACAAAAAGAAATCATCCGAAGCCTTAGCATGTCTGGAGGTAGGTTAGTTACAAACGAATCGGAAACCCAACCCAAACAAGAACCTGAAGAGGAAGAACAAAAGCCTATCCAAGTTTCTACGACGCCAACCCCACCACCTCATTCAGAATCTCCACGTCCTATAACAAATAATAATCTTGTTTCTCAAAATGATTCCGTTAAGATGGTGATAAAAAACGGCATTCTTATGCCTAAGCAAAAGCAAAGACGCTATCGTACGGAACGACCATTTTCCTGCTCCCAATGTTCAGCGCGATTTACACTTCGTTCAAACATGGAACGTCATGTAAAGCAACAGCATCCTCAACATTGGAGTGTCAGGCGCCCAACACCAAGAGCACCTCCGCCATACCCTACACCTGACACACTAGCTGATCGAGTCAAGTATGCGTTGTTAGCACGTCATTTGGAAAGACCATTGCAAACCTCTGATCGCTCACCTGTAAGAAGAGACTCCGACGAAGTTGCTGACAACGAGGAAGACGAAGATGATACACTGGTTATCGACGAGGAAACGGATGATCAGAAACTAGATGAACATTCAGCCGCACATAGAGCTGCTGCGGAAATTTTAATGGCTACACGTCAGCAAGAACTAAATAAGGACTTTGATCTTAAGATAGCTGGTAACCTTATTAACAAACCAATCCCAATTACCACTGAAAAAACCGAGACCGGAGTAGAAGGAGTTTCAAGCCAAGATAACGTGGTGCCCGTAGTTCCAACTCGAAGTGATGAAGAGGAGGACGAAGAAGGTCTGGTCGCATCCACTAGCGAGGGAAACAACTCTGGCAGCGATGAAAATAAGTCAGAATCGGATACTGGTATACAACCTCCAAAAAAGAAATCAGCTTACAGTCTCGCACCGAACCGCGTATCGTGCCCTTACTGTCACCGCAAATTCCCCTGGTCTTCATCTCTCCGACGACACGTCCTTACACACACAGGGCAGAAGCCGTTTAAGTGTCCCCACTGCCCACTCCTCTTTACAACTAAGTCTAACTGCGACCGCCACTTGCTCAGGAAACATGGAGGATCAGCTAAAGCCATTTTGGCTGAACCTATCCAAGATTCCATTACGCCACCACAGACGAATGATAGAAGTGTACCAGAAAGACCTTTTAAGTGTGCCTCGTGTCCAACGAGCACTTTTTCGTCTCTGGAAACGTTAAAGAAGCACATGGCGTCTCGACATGGAACGGGAGATTCGCAGCCAAGTTCTCCGAACCCTGATGAAGAAGTAGATGGAAGCTTAGTCTTCAAATGCCATCTCTGCGAGGGTTCGTTTGGTGACAGAACAGCTGCCTTGGAACATCTTGCGTCAGCGCATTCAGCTGAGTACGAACAGTTGGTTAGCAAGGGCGCATTAGACGCAGCTAGTGATCGTAGCGAGAGTGCCGATGATGATGATAGAGGAAAATTCCCGGATCATGCGAATAGAAAGGTCGTCTGTGCCTTCTGCATCCGTCGCTTCTGGTCGGCGGAGGATCTGCGGCGTCACATGCGCACACATTCCGGTGAGCGACCGTTCGCCTGTGATCTGTGCAGGCGACGATTTACATTGAAGCACAGTATGCTGAGACACAGGAAGAAGCACAGGGAAGAAACCGATGATGAGGAATCCTCGCCAAGAGAAGACACATCTAATGGTTATCGCTACCAAGAAGACGATGGCTCCGGTAACGAGGTCCCATGCAACGTGAACAACAACAACTCGCCACCCGCCGCGCCATACGACAAAAAACTCAAACTGGAAATGACATCGCGCAAATATTCATCCGAAGCCGAAAACGACACCGAAAATGGAGGTGACCTGATCGGCAAACTTCTTGGTATCCCTGACAAGACCATCATCAACAAACTGCTCTCTTCAGCAGACGAAGCCGCTAAATTCTTAGGAGTGAACAAATGA
Protein Sequence: MQGAASASAPPAAEPPASQQIKTEVISEAKVEADNQEEEDMKIEHETRATRTTSIDSDNRSDRSEEEDCRRARKRAASTSPSPIPLDKRTARFECPKCFQRFDSINAFDFHRFTAHGDDTRSGYDDYVDYSAKKIPDMLRSSHVSISEQRFRCEYCSRDFPSGQILDIHRKTCTSSTRISSPDRDRREDFFAKLDLRNRSFGIPGTLTPPMDRFTPKFDDHLNNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALESAVLTPPDTIVKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLAREEVKRSLAFHTPEVERRSEPTVRSTTPLTHYNPSFITERHPVTSLTKALPDTPALTPRESDPPMPRIKVKGIGQLTQIPEFRPPDLSFKTNDLPETYNDDAPVDLSTSDNNSCDVLDLSKKKRDTDDDEPKAPSRPAFDNSASVAASAAATAYEKTRLILAQQRLFENSLPKLDPSFYATQLSQLYASAVPGLPGLPIPPSFPINPYFLQTSFFPHPTDSQEITEMKQRLQKEIIRSLSMSGGRLVTNESETQPKQEPEEEEQKPIQVSTTPTPPPHSESPRPITNNNLVSQNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPTPRAPPPYPTPDTLADRVKYALLARHLERPLQTSDRSPVRRDSDEVADNEEDEDDTLVIDEETDDQKLDEHSAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPIPITTEKTETGVEGVSSQDNVVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGIQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSAKAILAEPIQDSITPPQTNDRSVPERPFKCASCPTSTFSSLETLKKHMASRHGTGDSQPSSPNPDEEVDGSLVFKCHLCEGSFGDRTAALEHLASAHSAEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREETDDEESSPREDTSNGYRYQEDDGSGNEVPCNVNNNNSPPAAPYDKKLKLEMTSRKYSSEAENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00986645;
90% Identity: iTF_00825108;
80% Identity: -