g5315.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- -
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000008.1:9198388-9206943[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0036 0.28 12.2 1.0 3 23 207 228 206 228 0.96 2 22 0.035 2.7 9.1 0.6 1 22 609 630 609 630 0.95 3 22 5.1 3.9e+02 2.3 0.3 1 22 672 693 672 695 0.82 4 22 0.97 74 4.6 0.8 1 14 704 717 704 725 0.79 5 22 0.0045 0.34 11.9 0.1 3 23 775 796 773 796 0.96 6 22 0.0076 0.58 11.2 4.4 1 23 802 825 802 825 0.95 7 22 0.095 7.2 7.7 0.0 1 23 851 874 851 874 0.90 8 22 0.014 1.1 10.3 3.4 1 23 879 901 879 901 0.97 9 22 0.023 1.8 9.7 0.4 1 23 907 930 907 930 0.95 10 22 0.006 0.46 11.5 1.6 1 23 942 964 942 964 0.97 11 22 0.0011 0.083 13.8 4.0 1 23 1007 1030 1007 1030 0.96 12 22 0.0032 0.25 12.4 1.6 1 23 1090 1113 1090 1113 0.96 13 22 0.00083 0.063 14.2 2.1 2 23 1137 1159 1136 1159 0.95 14 22 0.066 5 8.2 0.1 2 23 1165 1187 1164 1187 0.93 15 22 0.0075 0.57 11.2 0.2 1 21 1231 1251 1231 1252 0.95 16 22 0.00093 0.071 14.1 0.6 1 23 1262 1284 1262 1284 0.93 17 22 0.0002 0.015 16.2 0.4 2 23 1375 1397 1375 1397 0.93 18 22 1.4e-07 1e-05 26.1 1.1 3 23 1404 1424 1403 1424 0.98 19 22 0.035 2.6 9.1 0.1 3 23 1442 1462 1441 1463 0.94 20 22 0.091 6.9 7.8 0.0 1 23 1484 1506 1484 1506 0.97 21 22 0.021 1.6 9.8 0.6 1 23 1512 1535 1512 1535 0.95 22 22 0.00024 0.018 15.9 0.7 1 23 1543 1566 1543 1566 0.96
Sequence Information
- Coding Sequence
- atgaaTGTGAATTATGATAGTGTTTGTAGACTGTGCTTGTCATCTCGATGCGAATTACTACCGATATTTCCTACCACCAGTTCAGATGACACGGAACCTCCTGTCCTCGCCTCGAAAATTAAAGATTGCGTGTCAGTGCAGATAAGCGAAAATGACGACCTGCCAACTAATGTCTGCAGGAAATGCATGGACAATGTTAATAACTGGCACATATTCAAGACTGTGTGTGAAAGGACACAAAACAAGTTACAGTCTCTTATGAATAAGGAGAGCAACCAACTAGAAGAGGtgaaaataaaaagtgaacCCTTATCAGATGAAGCTTATGATGATGGAGTGGTTATTGATGGATCATATCCTGATAGTGAGaatGCCTCATCAAGTAGATTGCAACCTGAAGGGCCACCTATTTTGGCTTCACTGGGGCTCACACCGAGAAGTGATAAGgGAATGGAGAGCGAGAAAGATGAAGATTATGAAGACGAGGAAGAAATGATGCAGCCACAACAAACATTCACACACATGCCCAACATGCCTGAAGTTTCGATTACTGTCATGCGCCCATCAGGAGAAACCCTTCATGCTCGCCAAGGTATTCAGCAGCTTGCCTCAAAGGATTGCTTAGTGTGCGGCCGATCCTACAGGTATTCTCACAATGCTCGGCGACATGAGCTTACTGCTCATAATTTCGATAGATACACAAACAAGATTGGTACAAAGAAATCTCACGCTCACATGCAACCAAAATTCAGGCCGAACCCATTTAACCCTAAGGCTAGATTAATGCCAAATCCTATAAGCCACAAAATGCAATTTCATTCTAAATCAATGCCACCTAAAATGATGCCTCAGAAGATTGTTGCACCACCAAAGCCTATACCGATAAGAACAGGGAAAAATTCCCAAAACAATTTACCATATCCCCTTCGCATAAAGGCTCTTAAAGATTtgcaaattaagaaaaaagaacCTCAAATTTTAAAGACGTTATTAACTGCAAAGCCGGAAGTCTTAGTATCTGAAcctgaaataattaattcgGGACCGGAAAGTCCAGAAACATTAATTTCGGAGCCAGAGATTGCTTCATTTCAAGTGGAAGCTATTTTATCAGAGCCAGATGGTTATGTTAATCAACATGAAGATGACGAAATTGACGATGAAAACAATCAAGGACAGAATTATGATACTGTTGACATGGATTCAGAAAATGAGATCGAGATAGCTCGCCAGCAAGAGAATGACATCCAAGGTGACGAAAATCACGAAGTTAATGATGCCGAATATAATACTCATGAAGATGAAAATAACATGGTGGAGGTAAATGATGATAACGAAAAAGAGAATCGTGAAGATAATGGCGAGAGTCACGATAATATggatatagaaaataatattgcgGAAGAAGCCGACGCAGACGACGATAATGCCAAAGAAATTGACGATGAAAACgttgaaaaagaaaatgatgAACAAAACATAAATCATGAAGAGAATGATGACGATGACGATTTGCCACCTATGAGTATAGCACCCGTTGTCGAGATTAACGAGGATTTGCAAACAAATTGTTATAATAGTGATGGTAATGAAGAACTTGATGAAACCGTAGATCCAAATGATGCCGTTGATGGTGATGAAGGTGAAAAAGATATTGATCCCGATAAAGTTTATATTACGAAAACGCAAAGagattttattctaaaatatcgtgatattatacaacaaattaATACCAAACGGTGCATTTGCTGTAACAAAGAACACCCTCGTCGAAAAGCAGTTATACAACATTTACAGAAAAATGGACATAAAGTTCCTAAGCATACATGTTACAATTGCGTTGTCACTTTTACACATATAGGAGCTCTGCTCAGTCACATGAGATCTAATACTTGTACTGATCTttggaaaattatatataatgaaaatggtATCACTGATGATATAGTTTTAGAAGTTGAACCTAAAGACGTCAAAGTTCAATACAAAGATATACTTAATGCTAGATCTTACGCATGTAAATTGTGCCCAGCGAAATTTCAATTAAAGCAATTCATTATGAAGCATGTTCTTGATGTACATGAAGACGGTCAATCTCGTTTCCCTCATTCTTGCGTGCATTGTGGTCTACGATTTAAAGAGAAAAGTATAGGAAAGAGACACATACGAAATGGAGATTGCACAGTCGAAATATGCTGTGAGTTATGTTCAGAAAAATTTTTGAGCTTGCAAGAATTCAATGACCATGCTGTAGCTATACATGCAGGCAGCTTTGATCCTGATAATCAGAGCAAGTGTGTCGACGGTCGACCTACGGATTGTCCTATATGTGGTAAGAAGAATAGTAGTTACCCGAATTtggttaaacatttaaaaataatacataatgagGAAAAGCCTCATCACTGCCAACATTGTGATGCTAAATTCGAGCAAACTGCTGATCTTAACAAACACATCTATATGGAACATTCTGATAGATCATTAGGTATGCATACTAATGAACCTGATATGACTCTTGTAAAAGAGGAAGCTGAGGAGTATCACTATTCTTGCACGGAATGTAATGCGATATTTGAAACCGTCGATGCTTGGACGGATCATCAGGTGGCGGAACACAATCAAGTCGCTCATCATTGCGACCAATGCGAAAAGAAATTCTTGCGTCCATCAGAACTTGcggaacataaaaatacacaCTTGCGAGTTAAATTCTATCCTTGTAGTCTCTGTACGAACTCATACAGTACTCCTCAAAAGTTATCCGAGCATGTTCAGCAATCCCATCCGGGAGCGAACACGCGGGGTGGTGAAACTGAATTTTTCTGCGACTTGTGTATACGATCGTTTAAAAGTCGCCAAGCATATTCTAATCATATGCGTATTCATTCCAAAGTGCCTACCACTAATAGAAAGCCTGGAGAAACGAAAGGTTTCGGACCTCAAATCATCGGAAAACCGATTCGTCATTTCTCAATGCAACCTGGCTTTAGTCCTTATGTTCCTAACGCACCTTATTGTTGTGATATTTGCGGTAAAGGATTCATgcacaagaaaaatatatggaaaCACAAAAAGGTGCTGCATGCGGATCTTCTTAATGATAGAAACGATAGTGAGGAGAACACTATGCAAGCGTCCACCGAGGAAGATGATTACAATGTCGATGAAAACGGTGCGATTTTGTCGACTCCACAAtttgatagttttaatttcacaaATCTTTCAAACAATATGCAACAGACCTCGCAAGACGCTTTGCCATATTCCTGTGAATTATGTTACAAAAGGTTTCCGCTTCGAACTAGTTTATGGAAGCACAAACGCGCTAAACATGGAATTATAAATGCCAGTGCAAGTGGTGCTTCTGAAACCCAAACACAATCTTCGAATGAAGGCAGATCGAGCTGtactatttgtaaaataactttttcaGACAAAAAATCGTACTATCGTCATAGAAAAAATGTCCACAAGTCTACCGTTCAAATGTGTAAAATATGCGGAAAACCGCTTAATTCGACCTTAGAACTTTATGAACATCTGAAAGCGGCACATGCCCGAGAGCTTCTGGGTTATAATGCGAATCAAAGTTCAAGCAAATCACAAGAACTGAATCAAGAATTGGATATAGAATACGATGGTGATCAAGATTCAGTCGATCCCAGCGTCGACTACCAAGCGCGCTATCCCTGCGACACGTGTGGAAAACAGTTTGTCGGATTATTGGCTCTACAAAACCACCAATGTATCAACCAGATACAGAATCAACCTCAAACGTTCGATTGTGAAATATGTCACAAGAGTTATACTTCTATTGCTGCCTTAAAGAGCCACCGAGGCTGGCACTTGCGTTCTCCTGATGGTAAAGCCGCAGCAAATAATTCTGGACTGTGGATGCCTCAAAACAAAGTAACTAGTAAAGTGAGTAAACACGAAGTAGTGGATGCTCCTCCAGTTCCTCCTAAAACATCAACTTCGACCCCAGCCTCGTTGGCTAAAAGGAGATTGCCACCAGAAGTAGAAGTGACTGTCGTAAATCCGAATAAAAAATTGAGATCAGACGATTCTATCGAAATGGATCATCAGAACAATTTATCAGGGGGTGCCGAAGACAGATACTGTAATCTTTGTGATAAAGAATTTACAAAGCGAGCTGCATACCAGCGCCATATGGACGAAGTTCATCAGCCGAACTCAGTGTTTTGCCCCGTTTGCGACAAGAGCTTTACGCGGAAATCTACATTGATCGTGCACATGAAGAAGCACTACGAGGGTGGGGAAGGAAGTTCTACACAAATGGAGGAAGACGTACAAGCGTGCGAAGTCTGTGGTGCCCAATTCGACAGTGTGAAGGCTCTAAATGCACATCGGGCTTTGCATCACGGCGAAGATTCCGCTGAGTCCGAGGACGACGGCGAAGTGATACCCGCGCCCCCCGGCGAGTTCACGTGCGGACAGTGCGGCGACGGCGTGGCCACCCCACGCGACTTGATCGCTCACCGAACGATGCACGCCACTCCCACTAAATTCTTTTGTAATATCTGCAAGGTTTATTTTGCCCGAGCTCTTGATTTGTCCTCCCACACACGAGCAAGACACTCCGACAACGAGAAAGTGTTCTTCCCGTGTGCTATGTGCGACCGATTCTATATGAACAAGAAGAGTTTGCAGAGGCACATCGAAATGTCGCACTGA
- Protein Sequence
- MNVNYDSVCRLCLSSRCELLPIFPTTSSDDTEPPVLASKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKTVCERTQNKLQSLMNKESNQLEEVKIKSEPLSDEAYDDGVVIDGSYPDSENASSSRLQPEGPPILASLGLTPRSDKGMESEKDEDYEDEEEMMQPQQTFTHMPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHNFDRYTNKIGTKKSHAHMQPKFRPNPFNPKARLMPNPISHKMQFHSKSMPPKMMPQKIVAPPKPIPIRTGKNSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDGYVNQHEDDEIDDENNQGQNYDTVDMDSENEIEIARQQENDIQGDENHEVNDAEYNTHEDENNMVEVNDDNEKENREDNGESHDNMDIENNIAEEADADDDNAKEIDDENVEKENDEQNINHEENDDDDDLPPMSIAPVVEINEDLQTNCYNSDGNEELDETVDPNDAVDGDEGEKDIDPDKVYITKTQRDFILKYRDIIQQINTKRCICCNKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFTHIGALLSHMRSNTCTDLWKIIYNENGITDDIVLEVEPKDVKVQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRFPHSCVHCGLRFKEKSIGKRHIRNGDCTVEICCELCSEKFLSLQEFNDHAVAIHAGSFDPDNQSKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHHCQHCDAKFEQTADLNKHIYMEHSDRSLGMHTNEPDMTLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSLCTNSYSTPQKLSEHVQQSHPGANTRGGETEFFCDLCIRSFKSRQAYSNHMRIHSKVPTTNRKPGETKGFGPQIIGKPIRHFSMQPGFSPYVPNAPYCCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDDYNVDENGAILSTPQFDSFNFTNLSNNMQQTSQDALPYSCELCYKRFPLRTSLWKHKRAKHGIINASASGASETQTQSSNEGRSSCTICKITFSDKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQSSSKSQELNQELDIEYDGDQDSVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQIQNQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDAPPVPPKTSTSTPASLAKRRLPPEVEVTVVNPNKKLRSDDSIEMDHQNNLSGGAEDRYCNLCDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGEGSSTQMEEDVQACEVCGAQFDSVKALNAHRALHHGEDSAESEDDGEVIPAPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMSH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01078400;
- 90% Identity
- iTF_01078400;
- 80% Identity
- -