Basic Information

Insect: Nymphalis c-album
Gene Symbol: -
Assembly: GCA_905332345.1
Location: CAJOBY010000014.1:7952735-7965869[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7.3e-05 0.0056 17.5 2.2 1 23 415 437 415 437 0.97

2 18 0.0053 0.41 11.7 0.7 1 20 443 462 443 465 0.94

3 18 2.8e-05 0.0022 18.8 4.4 1 23 484 506 484 506 0.98

4 18 0.00017 0.013 16.4 4.7 1 23 512 534 512 534 0.99

5 18 3.2e-05 0.0025 18.7 5.3 1 23 540 562 540 562 0.97

6 18 9.3e-05 0.0071 17.2 6.7 1 23 568 590 568 590 0.97

7 18 0.00021 0.016 16.1 5.6 1 23 596 618 596 618 0.97

8 18 4.4e-07 3.4e-05 24.5 1.9 1 23 624 646 624 646 0.98

9 18 8.8e-06 0.00067 20.4 7.7 1 23 652 674 652 674 0.98

10 18 7.6e-06 0.00058 20.6 6.4 1 23 680 702 680 702 0.98

11 18 7.7e-06 0.00058 20.6 6.5 1 23 708 730 708 730 0.98

12 18 8.6e-06 0.00065 20.5 6.4 1 23 736 758 736 758 0.97

13 18 2e-05 0.0015 19.3 7.1 1 23 764 786 764 786 0.97

14 18 2.8e-06 0.00021 22.0 6.0 1 23 792 814 792 814 0.98

15 18 0.00012 0.0094 16.8 10.0 1 23 820 842 820 842 0.97

16 18 1.8e-06 0.00014 22.6 5.2 1 23 848 870 848 870 0.98

17 18 0.0005 0.038 14.9 0.3 1 23 877 899 877 899 0.96

18 18 0.013 1 10.4 5.3 1 23 910 932 910 932 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7.3e-05	0.0056	17.5	2.2	1	23	415	437	415	437	0.97
2	18	0.0053	0.41	11.7	0.7	1	20	443	462	443	465	0.94
3	18	2.8e-05	0.0022	18.8	4.4	1	23	484	506	484	506	0.98
4	18	0.00017	0.013	16.4	4.7	1	23	512	534	512	534	0.99
5	18	3.2e-05	0.0025	18.7	5.3	1	23	540	562	540	562	0.97
6	18	9.3e-05	0.0071	17.2	6.7	1	23	568	590	568	590	0.97
7	18	0.00021	0.016	16.1	5.6	1	23	596	618	596	618	0.97
8	18	4.4e-07	3.4e-05	24.5	1.9	1	23	624	646	624	646	0.98
9	18	8.8e-06	0.00067	20.4	7.7	1	23	652	674	652	674	0.98
10	18	7.6e-06	0.00058	20.6	6.4	1	23	680	702	680	702	0.98
11	18	7.7e-06	0.00058	20.6	6.5	1	23	708	730	708	730	0.98
12	18	8.6e-06	0.00065	20.5	6.4	1	23	736	758	736	758	0.97
13	18	2e-05	0.0015	19.3	7.1	1	23	764	786	764	786	0.97
14	18	2.8e-06	0.00021	22.0	6.0	1	23	792	814	792	814	0.98
15	18	0.00012	0.0094	16.8	10.0	1	23	820	842	820	842	0.97
16	18	1.8e-06	0.00014	22.6	5.2	1	23	848	870	848	870	0.98
17	18	0.0005	0.038	14.9	0.3	1	23	877	899	877	899	0.96
18	18	0.013	1	10.4	5.3	1	23	910	932	910	932	0.99

Sequence Information

Coding Sequence: ATGAATCCTgatcatcataatataaatacggGTGGTGGCCAACCTCCAGGCAGTGCTGAGGCTCAGAATCAAAGAGTGCAATCAACGCAGCAACAACAGCAGGCTCAAGCTAATAACTTGACTCCGACAACATCTGCTACTGATTTGAGAGTTAACTCAGCGGCGGTAAACGTTGCTTTGTCAAGCGTGGCGAAATACTGGgtgtttacaaatttatttcccGGTCCAATACCTCAGGTTTCCGTATATGGGTTACCCACCGGTGCGAGAATTGAAAATGGGAAGCCTGTAcagGATCTTGGACAGGCACATGCAAGTCTTCTAAATGGAGatcctaatattatattaggacATGCAGGACAACAACAAGTTACTGTTTCGGCAGGGGGCCAACAAATTCCTGTTTCACAGATTATTGCAAATCAAGCAACACAAGGCCATGAGTCACTGGTGGCGCACGGCGCGGCCGAGGGCGGCGGTGCCACGCTGTCGGTGGCGGCCGCGCAGACCCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACATAACATTGATATGGTAAATCACGTGGGCCATCACTCTCAGCAACATTTAATGCAGCAACAGCTGATGGCTGCCACCCGTCCAGAACATTCTAATCAGCAGATACAATTGACGGTAAGCGAGGACGGCATCGTGACCGTGGTAGAGCCGGGCGGCGGCAAGCTGGTGGACAAGGACGAGCTGCACGACGCCATCAAGATGCCCAACGACCACACGCTCACCGTACACCAGCTGCAGCAGATCGTGGGCCACCACCAGgtGATAGACAGTGTGGTCCGCATCGAGCAAGCCACAGGCGAGCCGGCCAACATCCTCGTGACGCAGAACCCGGATGGCACCACGTCCATAGAGACCAGCGCCGCCGACCCGCTCATTGTAAAAGATGAGAAAAACGTCTCCAAGATTGAGTCTACGCAGTTCGCGATACCCGCCGACATTAAAGATATCAAGGGAATTGACTTAAAGAGTGCTATGGGTATGGAAGGGGCGGTGGTCAAAATATCTACTGGAACAGAACATGATCTTCACGCCATGTACAAAGTTAATGTAGAGGATCTTTCACAATTACTTGCCTATCACGAAGTATTTGGAAAACTTAATTCTGAAGGCCAACCACAAGCAAAGGTGATCAGCGAGGTGGAGGTGGAGGCGGGCACGAGCGCCGCGCTGTCGGAGGCCGAGTCGTCGCCCGGACACCACTCGTGCGACATCTGCGGGAAGATCTTCCAGTTCCGATACCAGCTCATCGTCCACAGaCGATACCATGGAGAGAGCAAACCATTTACATGTCAAGTGTGTGGTTCTGCATTCGCCAATCCAGTAGAACTTTCGAAACACGGAAAATGTCATCTCgCCGGTGACCCCGCCGAGCGCCAAGCGAAACGATTGGCTCAAGACAAACCGTATGCTTGCTCCACTTGCCATAAGACATTCGCACGTAAGGAACATCTCGACAATCATGTCAGAAGCCACACCGGGGAGACGCCATACAGATGTCAGTTCTGCGCGAAGACGTTCACGCGCAAGGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCACTTCATGAACCACGTCATGTGGCACACCGGTGAAACTCCACATCGCTGTGACTTCTGCTCCAAGACATTTACCCGTAAAGAACACTTACTAAACCACGTGCGCCAGCATACGGGCGAGTCTCCTCATCGGTGCAACTTCTGCGCCAAATCCTTCACACGGCGCGAACATCTTGTAAATCACGTCCGCCAACATACGGGTGAAACGCCATTTCAATGTGGTTATTGTCCTAAAGCATTCACTCGAAAAGATCATCTTGTGAATCACGTCCGCCAGCACACCGGGGAGTCCCCTCACAAATGTTCTTATTGCACAAAGTCATTCACGCGAAAGGAACATCTAACCAACCACGTACGGCAACACACAGGCGAGTCCCCCCACCGGTGTTCATACTGCGCGAAGTCCTTTACAAGAAAAGAACATCTTACTAACCATATAAGACAGCATACGGGGGAGACTCCTCACAAGTGCACGTATTGCTCTCGCGCCTTCACGCGGAAGGAACACCTCAACCAACACATCAGACAACATACCGGGGACATGCCACATACCTGTTCATATTGTAACAAGAGTTTCACGAGGAAAGAACATCTTGTCACGCATGTACGACAACATACTGGAGAGACACCATTCAAGTGTACATATTGTTCGAAGTCGTTTTCTCGAAAAGAACATCTCACCAACCACGTACATCTTCATACAGGCGAGACGCCACATAAATGCCCCTTCTGTACAAAGACTTTCTCGAGAAAAGAACATTTGACTAATCATGTTAGAATACACACTGGTGAGTCTCCTCATCGATGTGAATTTTGTCACAAGACATTTACGCGTAAAGAACACCTTACGAACCATCTCAAGCAGCACACTGGAGACACACCTCACACTTGCAAAGTGTGTTCTAAGCCTTTCACGAGAAAGGAGCATCTTATCACGCATATGAGgtCACATAGTTGTGGAGAAAGGCCGTACAGTTGCGGTGAATGTGGAAAATCGTTCCCATTGAAAGGCAATTTGCTATTTCATGAGAGATCACACAACAAGAGTTCCAATTCTGCTAATAAATCTTTCCGATGTGAAATTTGCTCAAAGGAATTTATGTGCAAAGGTCATCTAGTATCGCATAGACGAACGCATACAGATGCAGTTGAAAATGCAGTTAGTACGGAACCGGCGACTGAAGGCGAAGACTGCGGAGACTGCAATAAATGTGAAAAAGATGTGCCAGAGAGAAAACATGATACAAGAGCATCATCAGAAAGTAGAGCTACTGAGGCAAATGTAGCACAAAGTCAAACGACTAGTTCAGCAGTTATGCAAATAACCAGCCAGCAAGTTCGAACCGGAACTGCTACTAGTGTAGCAAGCGTGGCAGCTGGCACTTTCACTCACACAACAAATACCCAACACCATACGGGTACGACCATAGCACATCATCCAGTCACAGTGAATTACTAG
Protein Sequence: MNPDHHNINTGGGQPPGSAEAQNQRVQSTQQQQQAQANNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGARIENGKPVQDLGQAHASLLNGDPNIILGHAGQQQVTVSAGGQQIPVSQIIANQATQGHESLVAHGAAEGGGATLSVAAAQTQQVPNNRVEFVQHNIDMVNHVGHHSQQHLMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVEPGGGKLVDKDELHDAIKMPNDHTLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAADPLIVKDEKNVSKIESTQFAIPADIKDIKGIDLKSAMGMEGAVVKISTGTEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSEGQPQAKVISEVEVEAGTSAALSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSKHGKCHLAGDPAERQAKRLAQDKPYACSTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCAKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCSYCAKSFTRKEHLTNHIRQHTGETPHKCTYCSRAFTRKEHLNQHIRQHTGDMPHTCSYCNKSFTRKEHLVTHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHTCKVCSKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKSSNSANKSFRCEICSKEFMCKGHLVSHRRTHTDAVENAVSTEPATEGEDCGDCNKCEKDVPERKHDTRASSESRATEANVAQSQTTSSAVMQITSQQVRTGTATSVASVAAGTFTHTTNTQHHTGTTIAHHPVTVNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00985351;
90% Identity: iTF_01078391;
80% Identity: -