g1373.t1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nymphalis c-album
Gene Symbol
Hr39
Assembly
GCA_905332345.1
Location
CAJOBY010000002.1:10358359-10369268[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.32 3.9e+03 -2.7 2.2 76 158 99 210 53 241 0.42
2 4 2 2.5e+04 -7.0 9.9 76 161 220 311 149 363 0.51
3 4 1.1e-08 0.00013 22.0 0.1 1 43 445 490 445 497 0.71
4 4 6.4e-64 8e-60 203.8 0.0 204 408 491 696 478 696 0.94

Sequence Information

Coding Sequence
ATGAATACCGCGATGTCGAGCGAGGAGGCGGTAAAAGTGGAAGGGGGACATGTCTCCGTCACAACCATCAGCATGTCTGGTCCAGAAACTAGCAACGGTCAGTTCTCCTACAGTTCGAGCGGAGTTCGCATCAGCGTGTCTTCAGACCCTCACGATGAGGATTCTACTGATGCTGAAATCTCCAAAATCGATTTCACGCAACATCAATACGAGGTGAACATGAGAAACAAAAAGAAGCGTTCGTCAAGCGGACAGTGCGAACAGAATGCAGAACAAGAACGTCCTATGTCCTGGGAAGGGGAACTGTCCGACTCTGAAATGGTTATTGATACCAGTGTCAACAATGATGAAAACAGCAGCTCTCTCGACTTACAATCCTCGCGGGACTCCATCGACACCCTTCGAAACGTGACGATTAAGACGGAGAAACTCAGAGAGGAGCCTCTCAAAATAGAAGCGTTTCAGAGCTTGGACGATCAACGAGTTATGGACCTCAAATACAGCGTTCCCCTGCAGTCGCACCAGCGGAGTCTCAGCATGAACAGGATATCAGTACTAACGGATAATGCGTCACTATCCCTCGCGAGACGACCGTCGTCGCCAACAAGCAGTGCTAAATCGACAATGTCTGATCACTACGACATGGCACAACTGATGCACAACCCTGTCGTAGAAGTCCAGAACTTGACTATCAAGAAGGAAACCCAATTGTCTGAACTAAAATGCGAACCAACAGTGGGTATGGACAAGTTATTAGCTCTGCACGGTTCGCCGTTGCTAGGTCGACTGCCTCGGGTCCAATCAAGTGCCAGTACGGATTCCGCCGTACATTCTATGTACACACATAGtgtATACAGTAGTCCTTCAGCTAGTCCTCGTCCGTCACGTCACTACACGCCGTCTCTTTCTCGCAACAACAGCGATGCATCACACTCATCGTGTTACTCATACAGTTCCGAGTTCTCACCTACTCATTCGCCAGTTCAGGGCCGACATCCTCACGTTGTATACCGCGAGGCTACTGTCTTCCCCGCTTCACCCGCGCATGATGAAGATACGGATACAACTGATGAACGCCTTCATCATCATCAGGGTATTAGTAGACAACAGTTGATTAACAGtcCGTGTCCAATTTGCGGTGACAAGATAAGCGGTTTCCATTACGGAATATTCTCCTGCGAATCGTGCAAGGGATTCTTCAAGCGGACCGTACAAAATCGGAAGAACTACATGTGTCTCCGCGGCGGGAACTGCCCCGTCACCGTCGCCACGAGGAAGAAGTGTCCCGCCTGCAGATTCGACAAGTGCCTGGGGTGTGGAATGAAGCTcgaagCGATCCGCGAGGACCGCACGCGCGGCGGGCGCTCGACGTACCAGTGCTCGTACTCGCTGTCGGGCGCCGCGATGAGCAAGTCGACGGGCAGCCCGTCCGCCAACCCGCTGCTGGCGGCCAGCGGCATCACGGCGCAGAACTCCAGCGCCGACTTCCTCGCCGACCTCTGCAACATCGCGGACCACAGGCTCTACAAGATCGTCAAGTGGTGCAAGAGTTTGCCgctcttcaaaaatatttcgATCGACGACCAGATCTGCCTGCTGATCAACAGCTGGTGCGAGCTGCTGGTGCTGTCGTGCTGCTACCGCGGCGTCAGCACGCCGGGCGAGGTGCGCGTGGGCGGCGGCCGCGGGATCACGCTGCACCAGAGCGCCAAatacGGCTTGACGCCATGCATAGAACGAATGCTTAGTTTCACGGACCACTTGAGAAGGTTACGAGTGGACCGGTATGAATACGTTGCGCTCAAAGTAATTGTACTACTCACTTCAGaCGCACCAGAATTGCGTGAAGCGGAAAAAGTGCGAGCATCCCAAGAAAAAGCGCTCGCAGCGCTGCAAGCGTACACTGCGACGCATTCGCCCGATACGCCCGCTAAGTTTGGCGAACTGCTTCTGCGTATACCCGAGTTACAGCGAACTTGCCAGTTTTTCATGCAAGTCGGAAAGGAAATGCTGAACCCGGCTAATAAGGGCAAGGACGGTGAAGGTCCGAGCTTCAACCTCCTTATGGAACTCCTAAGAGGCGACCATTGA
Protein Sequence
MNTAMSSEEAVKVEGGHVSVTTISMSGPETSNGQFSYSSSGVRISVSSDPHDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGQCEQNAEQERPMSWEGELSDSEMVIDTSVNNDENSSSLDLQSSRDSIDTLRNVTIKTEKLREEPLKIEAFQSLDDQRVMDLKYSVPLQSHQRSLSMNRISVLTDNASLSLARRPSSPTSSAKSTMSDHYDMAQLMHNPVVEVQNLTIKKETQLSELKCEPTVGMDKLLALHGSPLLGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPSRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQGRHPHVVYREATVFPASPAHDEDTDTTDERLHHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYSLSGAAMSKSTGSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKGKDGEGPSFNLLMELLRGDH*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00985246;
90% Identity
iTF_01078304;
80% Identity
iTF_01078304;