g16017.t1
Basic Information
- Insect
- Nymphalis c-album
- Gene Symbol
- egg
- Assembly
- GCA_905332345.1
- Location
- CAJOBY010000080.1:482-14145[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7 1e+04 -3.4 0.1 32 38 621 627 597 628 0.86 2 2 1.1e-12 6.7e-09 35.7 0.0 4 75 659 723 656 725 0.87
Sequence Information
- Coding Sequence
- ATGAAAGAAATGAAGGATGGATCTTCAAATAATGTCCAGGAAGATGCAGACGCCATAAACGTCGATGAATCTAACGACGCAAGTGTTGATACAAAACTGGAAAGTGAAGCTCGCGACACTTCACCGAAAACATCACCGACGAAATctCCGAAATTTACAATGGGCTTAGAAGTCTTCAACCTTGATTCTGATGATGAAGAAGAAGAAACTGTACCTGAAGAAGTCGCTCAAGATATCCTAGCAGTACAGATTCAGGATGTGATGGAAGGAATCAAGAGTGAACAGCTGAAATGCATAAATAGGTGTTGCCCGGGGAACACTGGCGTTGAATTCTATATAGCTGACAGCGAAGCGATGAACTTCTATGATGCGGACAGGAAGAGGCGCGGCTACGTGTGCCAGAACTGCGCTGATGCCGTCGAGAAGAGGAACCAGGAATTAATAGACGGTATTAAGAATTTCACACCGCTCCTGGAACTCAGTATCAACAGAAGCGGCGAGGAGCTGGTCGAGATATCGGACTCCGAGTCGGATGACGAACCGGAACTAGACCAGGATCAGATGCAAATGATCGGGGTGGAAGGCGCGAAgATAGCGGAGGAGAATCTCGCGTCGTTGATTAACGAGACTTGGGAGAAATACAAGATGGACGCGCGTTTGGTGGACACGCAGGACGCGTTAGAAAAACAAATGGAAAAATTGgaaaAGGAGAGTGAGGAAATCAATGAGATACTCAACGACTGTCAGGTGGCGACGGACAAGCTCAGGAATGAGCTGTACGCGACCTTCACGCCGGACATCCGGGAACTGACGCCGTTCGTGATATACGACATGCCGAACTGTTCGTACTCGTGCATCGAACCTTCAACGACGGAGCAAGTTACAATGAAACGAGCACGGTCGCCGTCTATAGAGATTCCAGCCAAACGTCCCGCCATACCGTTGGGGTATGCGCcgttacatgaaaaaaatagtgaGgaTTCGAAGAATATAATAGTGACGAGCGAAAAAGCCGAAGATGACAATACGGACGTATCGGTCGTGAAGTTGTCAGCGGAATCAGCCCCGAAGGACCTGCCGCCGCCAGGGGAAATCACGATGCCCCCCGTTAAGGCCGGGATGACGGTGTATGCGATGAAGAACGCCTTCGGGTCCTGGCTCAAAGCGAGGATCGTTGAAATAATACCGAAGCAGCCTAATTCAACGTTCACCATGTGTCGTGTTAAATTCGAACACAAAGTGAACACGAAGAACATGTTCAAGATCCTGCCGGCGAGGTGCCTCGCATACTACGAGCCCCCAGACGTCAGGATGACCATTGGTCGTCGTGTAATTGCGCTGTTCCAGGATACGAATAAACGCGAGACGTACTACTCCGGAGTCGTCGCTGAGATACCGAATCCGGTGAACTCTTATCGCTACCTGATCTTCTTCGACGACGGCTACGCGCAGTACGCCCATCACTCACAGACGCGGCTCGTGTGCGAGTGCTCGTGCTACGTGTGGGAGGAGGTGCACCCCTACTCGCAAGAGTTCGTGCGCCAGTATCTGCTCGCGTACCCCGAGCGGCCCATGGTGCGCCTGCACGCCGGCCAGAACCTCAAGACCGAGTGGCAAGGCAACTGGTGGTCGTCGCGCGTGATGCGCGTGGACGCGTCGCTGGTGGAGATGAACATGCCGTATGTGGAATACACGAGGTCGGACGAGCAGACCAACAAAGCGGGCGACGCGCAGACCGCCCTCCAGCGAGCACAGATGCAGAACGAGGAGCTGCGGCGCCAGCGCGCGGTGGCGAAGAAGTCGACGACCGCGCCCGTGCCACCACCGCCCGGCACCGGCAACCTCGACGGCGCCTCCAGCAGGGTGGTCTATTACACGCCGAAGAGTGCGGTGAGGCCGTACAAAATGGTACCGCACACGTGCTCGCCGAAATGCAAGCGTACAGACGTCCTGAAGCTCAAGGATCTCCGAACGTACAACCCGCTGACCAAACCGTTGCTGAGCGGTTGGGATAGGCAGGTGGTGCGCTGGAAGGGCGGTCGCAGCGTGCTGTACGTGGCGCCGTGCGGGCGACGCACGCGCGACGTGCGCGAGCTGCACGCCTACCTGCGCGCCGTGCAGTCCGACATGCCCGTCGACCTGTTCGACTTCAGCCCCGCCACGCACTGCCTGGCCGAGTTCGTGCTCAACAGCTGCTTCGTCGGCAAGAAGGTACCTCCCCCCTCCCCCTACACGCCGCCACACCGGCTGATATTCAGATTGACGATCAGTCCAAATCCAGAATTTAATATCTGA
- Protein Sequence
- MKEMKDGSSNNVQEDADAINVDESNDASVDTKLESEARDTSPKTSPTKSPKFTMGLEVFNLDSDDEEEETVPEEVAQDILAVQIQDVMEGIKSEQLKCINRCCPGNTGVEFYIADSEAMNFYDADRKRRGYVCQNCADAVEKRNQELIDGIKNFTPLLELSINRSGEELVEISDSESDDEPELDQDQMQMIGVEGAKIAEENLASLINETWEKYKMDARLVDTQDALEKQMEKLEKESEEINEILNDCQVATDKLRNELYATFTPDIRELTPFVIYDMPNCSYSCIEPSTTEQVTMKRARSPSIEIPAKRPAIPLGYAPLHEKNSEDSKNIIVTSEKAEDDNTDVSVVKLSAESAPKDLPPPGEITMPPVKAGMTVYAMKNAFGSWLKARIVEIIPKQPNSTFTMCRVKFEHKVNTKNMFKILPARCLAYYEPPDVRMTIGRRVIALFQDTNKRETYYSGVVAEIPNPVNSYRYLIFFDDGYAQYAHHSQTRLVCECSCYVWEEVHPYSQEFVRQYLLAYPERPMVRLHAGQNLKTEWQGNWWSSRVMRVDASLVEMNMPYVEYTRSDEQTNKAGDAQTALQRAQMQNEELRRQRAVAKKSTTAPVPPPPGTGNLDGASSRVVYYTPKSAVRPYKMVPHTCSPKCKRTDVLKLKDLRTYNPLTKPLLSGWDRQVVRWKGGRSVLYVAPCGRRTRDVRELHAYLRAVQSDMPVDLFDFSPATHCLAEFVLNSCFVGKKVPPPSPYTPPHRLIFRLTISPNPEFNI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -