Nful010538.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- ham
- Assembly
- GCA_005281655.1
- Location
- NW:37660-65605[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0009 6.5 6.7 0.1 21 45 255 279 245 282 0.84 2 3 0.0006 4.4 7.2 0.5 21 45 283 307 279 313 0.89 3 3 7.7e-06 0.056 13.3 0.1 20 45 311 336 307 345 0.87
Sequence Information
- Coding Sequence
- ATGAGCGGATACCTCGGTAGCATCATCCTGCCCCCGACGTTGCTGCACGACCCGAAGTATCCTCCAGCCATGCGGGAGAAGGACTCGAGTCCGAGAAAGATGCCGGGCCACATAAGCCCAAAGCAAGCCAGTATTTATCCCTTGAGCGTCCGCGTGCCGGACGTCGAGGAATTGCCGTACGACCTCAGTCATGGTCACGGCCGTGGCCTATCGAGCCCGACGAATCAGCAACAGCCACACATGAGTCCCGCCGCAAGACCACCCCAGCCGCACCATCAGGACGATCAGGACAGTGAGCCGCTCGATCTTCGCGTCGATCACAAAAAGGAACGACTCAGAGACGAGAATCAGAACGAGATCGAGGTGTTAAATCAGAACAGTCTGAGCGGTGGTCTGCCCTATCACACGGTGCTCTTCCCCCAGCATCATGCGGTACACCCGCTAGTCCTGGAGATGTACAGGTCGCATCATCACAATTCGCCGGTGCCCGATCTGCCGAAAATCCAGGTCAGAGCGTTGCCTACGATGGTACCTCTGCCATCCAACAGATTCTCGTCGTCCACTACTCCTTCTTTGCAACCTACGGCAAGAACTGTCAGTCCTATTGGCGGTCAACATCATCAGCAGCAACATCAACAGCAGACTCATACCTCgcaacagcagcaacaacagcagcatcaacagcaacagcagcagcagcaacaaccgCAACAGCAAGGCTCGAGTCTGTCACCTTACTCGATCATGCAAACCAGTCAAAAGAGCAAAGACAGATATCAGTGCAAATTCTGCGGCAAAGTCTTCCCGAGGTCGGCGAATTTAACGAGACACTTGAGAACCCACACGGGCGAACAGCCGTACAAGTGTAAGTATTGCGAGAGAAGTTTCAGCATCTCGAGCAATCTCCAGCGTCACGTCAGGAATATCCACAATAAGGAGAAACCCTTCAAGTGTCCACTCTGTGAGAGATGCTTCGGCCAACAGACCAATCTGGACCGGCATCTGAAGAAACACGACGCGGATGGGCCTACAATACTGGATGAAGTCAGATCGAGGTACCACTCAGGTCAGCTTTCGAGAACCGACGATTCCTATTTCGAAGAGATCCGCAATTTCATGGGAAAGATCACCTCGCGACAGGCCATATCGTACTTACCCGGTCTACTGAGCCACCCCACCGACGATTTCAGGAATGACAAGCAGCAACTCCAGCTGGAGGAGAAACGAGGTGACTCGTCGTACTTCAGCGACCGGGACAATCTCAGCTCGAGGTCGAGCAGCACGGCCAGCAGGCCGGAAAGTGTGCAAGAGGAACAGAGGGAGGCAAACTCGCCGCCACTCTCACCCGGTAATAATACCTGA
- Protein Sequence
- MSGYLGSIILPPTLLHDPKYPPAMREKDSSPRKMPGHISPKQASIYPLSVRVPDVEELPYDLSHGHGRGLSSPTNQQQPHMSPAARPPQPHHQDDQDSEPLDLRVDHKKERLRDENQNEIEVLNQNSLSGGLPYHTVLFPQHHAVHPLVLEMYRSHHHNSPVPDLPKIQVRALPTMVPLPSNRFSSSTTPSLQPTARTVSPIGGQHHQQQHQQQTHTSQQQQQQQHQQQQQQQQQPQQQGSSLSPYSIMQTSQKSKDRYQCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHDADGPTILDEVRSRYHSGQLSRTDDSYFEEIRNFMGKITSRQAISYLPGLLSHPTDDFRNDKQQLQLEEKRGDSSYFSDRDNLSSRSSSTASRPESVQEEQREANSPPLSPGNNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01099466;
- 90% Identity
- iTF_01255097;
- 80% Identity
- iTF_01077763;