Nful004348.1
Basic Information
- Insect
- Nylanderia fulva
- Gene Symbol
- SCRT1
- Assembly
- GCA_005281655.1
- Location
- NW:627536-632701[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6 4.9e+02 1.2 0.1 3 11 145 153 143 160 0.65 2 13 0.00055 0.044 14.0 0.2 1 23 312 334 312 334 0.94 3 13 1.2e-05 0.00099 19.2 1.2 1 23 342 364 342 364 0.98 4 13 9.8e-06 0.00079 19.5 0.1 2 23 372 393 371 393 0.96 5 13 6.3e-07 5e-05 23.2 1.0 1 23 399 421 399 421 0.99 6 13 2e-05 0.0016 18.5 2.3 1 23 428 450 428 450 0.98 7 13 1.6e-05 0.0013 18.8 1.6 1 23 456 478 456 478 0.95 8 13 1.6e-05 0.0013 18.8 0.3 1 23 484 506 484 506 0.98 9 13 5.2e-07 4.2e-05 23.5 1.2 1 23 512 535 512 535 0.96 10 13 0.00018 0.014 15.5 1.9 1 23 541 564 541 564 0.95 11 13 3.6e-05 0.0029 17.7 1.6 1 23 570 592 570 592 0.99 12 13 6.7e-05 0.0054 16.8 0.4 1 23 598 620 598 620 0.94 13 13 0.00028 0.023 14.9 0.1 1 23 626 650 626 650 0.94
Sequence Information
- Coding Sequence
- ATGAAAATTCTTCCTTACATATTTCTCTCCTTCATTTTGATCAATATTCTCTCCATTCATTCAACGCATCGCCGCGCCGAGAGGAAACCGGAAGCGTGTCCCTTCGACGCGCTTCCGGCAGAGGGCGCCCCGCAACCTCCGCCGCGACATATGCGATATTCCGGATCCTTTCTGCGGCAAGGCGGCCTTCTGCCGAGGAGTAAAAGCGCGGCGCCGAATAAGACGCCGTCCAAgaAAAAGATGACAGCTGATTCTGATAAGGATTCTACACACTGCTTAGTGTGCAATAGTAAAGTTGGAGTATCCACCAGAAATAGCTTGCGCATCTTCAATGATTCTTCCATCACTACATCGGAGAAGCCGCTTGCTGATGTTATAGCTACCGTTTTAGAAACAGATGTTAATGAGGAATCTGTTCATTCCCTTGTCatttgtaaaaaatgttttaaattattcaatgaGGTGGATGAGCTTGAAACTAGATTGACAGAAATCAAGCTTgaattatttaacaattataaaaGAACAGTAAAGAAATTGTCCAACACATTTCATAATGAAGAAGAATATAATGACCATGATTATATAGACAATACAGAAAATCAAAACATTGTTGAAACAGAGGTAATCCAAACTGATAGCTATACAGCAGATGATACAccagaagaagaagaattaCTTGTAAATCCAGAAGAAATTATATTAGAAGCTGAAGACCCAAACGATTCAAATGAACCGAGCACAATAGAAAATTacaaaaagaaattgaaaaaaagcaAAGTTAATATGAAAGTAGAACCTATTCAGGAACAAatTGTACTTAGAGAGGAATCTTCATACAGTTGCTTGTTATGTACAGATGAAAAGGAAAGAGTTACCGCAGATGCTAAAACTATTATAGCACATATGAAAGATGTACATGATGCtcgtttatatatttgtgatgTGTGCGGGCAGGATTTCAGAAAAAGAAACGAACTTTCCTTGCATCTTGATGATCACGTTGCAAAGGAGGAAGGGGATTTTCAATGTGAGATATGTAATAGAATATTTAGCAATTTACGATTATTCAGAATTCATAAAAGGATACATTATCCGCAAGTGAAGTCGTGGCCCTGTGAGGCATGTGGAAAGAGATACAGTTCCAAAAATCTATTAGAAGAACACATGAATACACATATGGGCGTACGTCCATACGTGTGCGAGGTATGCAATAAAAGTTTCGCATCCAAATACACATATAGAGCGCACGTAAAAACACACGAAGTGCGACCTCGTCCATTTGAGTGCACTCAATgcaataaaacatttttgaatcAGCAAAATTTAAATCAACATGAACGAACACATAACGGCGTAAAGGAACATGTGTGTCACCAGTGTGgcAAGGCTTTTGGCTCACCTCACAATTTGGAAGTGCACAACATAGTGCATACCGGATTTAAACcttatatatgtagaatatgTAACAAAGCTTTCGCACGTAAAGCAGAAATACGTGATCATGAACGAACCCATACAGGCGAGAAACCGTATCAGTGCGAGTTCTGTGGAGCAACATTTAGTCAGAGATCGAATCTGCAATCTCACAAGCGAGCAACGCATTATAATGATAAACGTTACAAGTGTGACAAATGTCAAAAAGGTTTCAAAAGAAGAAGATTGTTGGATTATCATACAAAAGCAGCCCACACTGGTGAAAGACCATACAAATGCGACGTATGTGCAGCTACATTCGTCTACCCTGAGCACTTCAAGAAACACAGACGCATACATACAGGCGAGAAACCGTATCTTTGTGAGGTTTGTGGAAAAGCTTTTAATAGTAGGGATAATAGAAATGCACACAGATTTATTCATAGCGATAAAAAGCCATATGAATGTCTGGTATGTGGTTTGGGATTTATGAGAAAACCATTGCTTTATGCCCATATGCAAACTCAGGGCCATTTAAATGACACCATAGTAGTGAATCAACCAAGATTAACAACGGAAGATGAACAAGTAATAACGATTCCTAATAATGATGAATTATTAATGGAAGAAACTGAAACTGAACAGCTAAATGAGGCCGGATTGTACGTAACTGAATTGAAGGATCACGTGATTATACAGCAAGAAGGAGAAGATCAAATATATAATGAAGAAGATGTATTGAATATACCTGCTGAAGAAACCGTAAATAGCGGAGTGAATCAACTCGTTGAGAATCAGATGGATTTTGAGAGTGACGAGATAGAATGCAAAACTGAAGCTGTAGAACAAGTAGAAACGGTATACACTTATAACGAAAATGATGAAGATGAGACGATAGTTGTGCCCGCAACTAATTATAAAGAGCTGGTAGAAGATAGTAAAAACGTTCGACTAGTACAGATCAGATTTCCCTCGTCTGTAGATGGGGAGGGTAGAAGTTGGTTGAGCTTAGTACAAAATAATTGA
- Protein Sequence
- MKILPYIFLSFILINILSIHSTHRRAERKPEACPFDALPAEGAPQPPPRHMRYSGSFLRQGGLLPRSKSAAPNKTPSKKKMTADSDKDSTHCLVCNSKVGVSTRNSLRIFNDSSITTSEKPLADVIATVLETDVNEESVHSLVICKKCFKLFNEVDELETRLTEIKLELFNNYKRTVKKLSNTFHNEEEYNDHDYIDNTENQNIVETEVIQTDSYTADDTPEEEELLVNPEEIILEAEDPNDSNEPSTIENYKKKLKKSKVNMKVEPIQEQIVLREESSYSCLLCTDEKERVTADAKTIIAHMKDVHDARLYICDVCGQDFRKRNELSLHLDDHVAKEEGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCEACGKRYSSKNLLEEHMNTHMGVRPYVCEVCNKSFASKYTYRAHVKTHEVRPRPFECTQCNKTFLNQQNLNQHERTHNGVKEHVCHQCGKAFGSPHNLEVHNIVHTGFKPYICRICNKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDKCQKGFKRRRLLDYHTKAAHTGERPYKCDVCAATFVYPEHFKKHRRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGLGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDEQVITIPNNDELLMEETETEQLNEAGLYVTELKDHVIIQQEGEDQIYNEEDVLNIPAEETVNSGVNQLVENQMDFESDEIECKTEAVEQVETVYTYNENDEDETIVVPATNYKELVEDSKNVRLVQIRFPSSVDGEGRSWLSLVQNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00265178;
- 90% Identity
- iTF_00109987;
- 80% Identity
- -